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  • 1
    In: Blood, American Society of Hematology, Vol. 122, No. 21 ( 2013-11-15), p. 1338-1338
    Abstract: Myelodysplastic syndromes (MDS) represent a heterogeneous group of clonal hematopoietic disorders, characterized by ineffective hematopoiesis resulting in cytopenias and a highly variable clinical course. Cytogenetics are routinely used as one of the diagnostic, prognostic and therapeutic markers in the clinical management of MDS (Greenberg et al. Blood 120:2454,2012). Although karyotyping is generally considered as the gold standard in the cytogenetic characterization of MDS, 40-60% of the patients exhibit a normal karyotype. Intrinsically, the resolution of karyotyping is limited by its capacity to detect only those copy number changes that are microscopically visible (5-10 Mb in size). In contrast, microarray-based genomic profiling analyses allow a genome-wide detection of copy number alterations (CNAs), down to 100 kb in size, and regions of copy neutral loss of heterozygosity (CNLOH). Such analyses also overcome some of the other major limitations of karyotyping such as low success rate due to inadequate metaphase yield and/or poor banding quality. We have compared karyotyping and fluorescence in situ hybridization (FISH) with microarray-based genomic profiling with respect to the detection yield for genetic abnormalities in bone marrow samples from lower risk MDS patients. We used the HOVON89 study-cohort, a prospective phase II randomized multicenter study to assess the efficacy of lenalidomide with or without erythropoietin and granulocyte-colony stimulating factor in patients with low/intermediate-1 risk MDS; www.trialregister.nl; NTR1825; EudraCT nr.: 2008-002195-10. Inclusion target of the study is 200 low/intermediate-1 risk MDS patients (134 enrolled, inclusion ongoing). Data regarding cytogenetics, FISH and microarray were obtained in a fully blinded fashion for 68 MDS patients. For microarray-based genomic profiling we used the recently launched high resolution CytoScan HD Array (Affymetrix) platform. The following interpretation criteria were applied: (i) the threshold for CNAs was set at 〉 5 Mb, (ii) inclusion of 〈 5 Mb CNAs segments that coincide with known cancer genes as reported on www.sanger.ac.uk and (iii) the threshold for CNLOH was set at 〉 10 Mb and to telomere. Karyotyping and interphase FISH were performed using standard cytogenetic methods. In all 4 patients where karyotyping revealed no metaphases interphase FISH was performed. Thirty-six of the 68 (53%) MDS patients had an abnormal microarray profile. Of interest, in 13 of these 36 patients no abnormalities were observed by karyotyping and/or FISH. All these abnormalities observed by microarray only, involved focal 〈 5 Mb CNAs (containing e.g. the TET2, RUNX1 and DNMT3A genes) and regions of CNLOH (coinciding with 1p, 2p, 4q, 7q, 11p, 11q, 12q, 14q and 18q), which are all out of the scope of karyotyping and FISH. All CNAs identified by karyotyping and FISH were also observed by microarray-based genomic profiling, including a case with loss of 5q in 5% of the cells and loss of 7q in 9% of the cells as observed by interphase FISH and another case with loss of 5q in 3 of 20 the analyzed metaphases by karyotyping. These observations demonstrate the high sensitivity of the CytoScan HD array platform for the identification of CNAs in (small) subclones. As expected balanced translocations such as t(3;3)(q21;q26) and t(2;14)(q37;q22) present in 2 of the patients in our cohort were not identified by microarray-based genomic profiling. This study will be extended to all patients to be included in the HOVON89 trial. In conclusion, we demonstrate that in the present cohort of 68 patients, microarray-based genomic profiling allows the identification of almost all copy number abnormalities also observed by karyotyping and FISH. In addition, we show that microarray-based genomic profiling allows the detection of potential prognostic relevant abnormalities (focal CNAs and CNLOH) which would have remained undetected by karyotyping and FISH. The predictive and/or prognostic value of these novel CNAs and CNLOH will be evaluated within the ongoing prospective clinical HOVON89 trial in lower risk MDS. Disclosures: No relevant conflicts of interest to declare.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2013
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  • 2
    In: Blood, American Society of Hematology, Vol. 108, No. 11 ( 2006-11-16), p. 549-549
    Abstract: Minor histocompatibility antigens (mHag) play an important role in beneficial graft versus tumor (GVT) reactivities but mHag reactive T cells may also cause graft versus host disease (GVHD). A female patient with relapsed multiple myeloma (MM) after allogeneic HLA identical stem cell transplantation (SCT) responded 7 weeks after donor lymphocyte infusion (DLI) by developing transient acute GVHD grade II and complete clearance of the malignant cells resulting in a long lasting complete remission. From blood and bone marrow samples that were taken at the time of the clinical response, a dominant HLA-A2 restricted CD8+ CTL designated RDR2, was isolated that recognized the patients MM cells, PHA-blasts and EBV-LCL, but not resting T cells. To identify the peptide recognized by CTL RDR2, HLA-A2 was isolated from EBV-LCL that were recognized by CTL RDR2, and peptides were separated and fractionated by HPLC techniques applying several different separation conditions. Various HPLC fractions were analyzed by mass spectrometry (MS) and tested for recognition by CTL RDR2 in 51Chromium release assays. Based on the correlation between the presence of specific masses in the MS analyses and the reactivity of the fractions, candidate masses were selected, sequence analysis was performed, and synthetic peptides were generated. An 11-mer peptide was recognized by CTL RDR2 and was found to be identical to amino acid 13–23 of an alternatively translated protein of the ATP dependent interferon responsive (ADIR) gene. ADIR gene constructs forcing translation into the alternative frame displayed higher recognition as compared to constructs resulting in normal translation. Patient but not donor cells contained a known genomic polymorphism in the ADIR gene resulting in an amino acid change from serine (S) to phenylalanine (F) in the alternative frame. When ADIR gene transcripts from a panel of 76 unrelated HLA-A2 positive individuals were sequenced, a 100% correlation was found between the presence of the ADIR polymorphism and lysis of PHA-blasts by CTL RDR2. The polymorphism was present in 43 out of 76 individuals tested. We designated the mHag LB-ADIR-1F. Tetramer staining of patient samples taken after DLI showed at the peak of the response 2.6% LB-ADIR-1F specific CD8+ T cells. Despite the high number of circulating cytotoxic CTL, GVHD was mild, and rapidly disappeared after treatment. Since ADIR gene expression is not restricted to hematopoiesis, we compared recognition of LB-ADIR-1F expressing hematopoietic cell types with recognition of LB-ADIR-1F expressing mesenchymal stem cells and biliary epithelial cells. In both IFNg production assays and in cytotoxicity assays responses to MM cells, other hematological malignancies and activated T and B cells were strong, whereas resting T cells and non hematopoietic cells displayed only minor stimulatory capacity and were poorly lysed by LB-ADIR-1F specific T cells. In conclusion, the ADIR gene encodes a new frequently occurring mHag, and recognition of the antigen by LB-ADIR-1F reactive cells seems to depend on the activation state of the target cells. We therefore hypothesize that administration of LB-ADIR-1F reactive T cells may result in GVT responses, and that concurrent GVHD development may depend on the activation state of GVHD target tissues.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
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    RVK:
    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2006
    detail.hit.zdb_id: 1468538-3
    detail.hit.zdb_id: 80069-7
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  • 3
    In: Blood, American Society of Hematology, Vol. 124, No. 21 ( 2014-12-06), p. 323-323
    Abstract: Post-remission treatment (PRT) in patients with cytogenetically normal (CN) acute myeloid leukemia (AML) in first complete remission (CR1) is a subject of continued debate. Molecular diagnostic analyses provide additional prognostic information that may be used for a risk adapted approach. While FLT3 internal tandem duplications (FLT3-ITD), particularly FLT3-ITD with a high mutant to wild-type ratio are associated with an unfavorable prognosis, NPM1 mutations in the absence of FLT3-ITD are associated with relatively favorable outcome. Allogeneic hematopoietic stem cell transplantation (alloHSCT) is generally not applied in patients with NPM1 mutations without FLT3-ITD, while the role of alloHSCT and autologous HSCT (autoHSCT) in patients with FLT3-ITD is not settled. In the present study, we compared outcome of PRT with alloHSCT and autoHSCT versus chemotherapy by time-dependent analysis in patients with CN AML in CR1, according to molecular subtype. A total number of 488 patients were included with newly diagnosed, CN AML, who were treated in HOVON-SAKK phase III trials or in Marseille, France between 1995 and 2013. Patients were excluded if molecular information was not available or if EVI1 overexpression was present. The ratio of FLT3-ITD mutant to wild-type was available for 91% of the patients with FLT3-ITD positive AML. PRT consisted of alloHSCT (n=184) following reduced intensity conditioning (RIC, n=94) or myeloablative conditioning (MAC, n=90), autoHSCT (n=117), or chemotherapy (n=187). Endpoints of this study were 5 year overall survival (OS), relapse-free survival (RFS), relapse and non-relapse mortality (NRM) measured from start of consolidation. All reported estimates of outcome are at 5 years after PRT. To perform a time-dependent statistical analysis of PRTs, a multivariable cox regression model with time-dependent covariates autoHSCT and alloHSCT was applied with adjustment for FLT3-ITD and/or NPM1 mutational status, white blood cell count at diagnosis, late CR, age, and sex. The median age of all patients was 49 (range: 18-65) years, which was not different by type of PRT. A significantly higher proportion of patients that needed two cycles of chemotherapy to reach a CR received an alloHSCT. Both alloHSCT and autoHSCT were more frequently applied in the recent years. Sex, white blood cell count at diagnosis, and FLT3-ITD mutant to wild-type ratio were not significantly different between the types of PRT. Figure 1A/B depicts OS and RFS by molecular subcategory taking the FLT3-ITD allelic ratio into account. Favorable OS was found for patients with NPM1 mutated FLT3-ITD negative AMLs (72±4%), with similar OS for recipients of alloHSCT, autoHSCT, and chemotherapy (69±6%, 77±7%, and, 70±8%, respectively, p=0.56). Outcome in patients with a FLT3-ITD mutant to wild-type ratio of 〉 0.60 appeared to be very poor with OS and RFS of 17±8% and 4±4%, respectively. In these high risk patients, recipients of chemotherapy (n=13) and autoHSCT (n=3) all relapsed, while 2/5 patients receiving alloHSCT relapsed. Patients with NPM1 negative/FLT3-ITD negative AML or AMLs with a low allelic burden of FLT3-ITD were considered as an intermediate risk group because of similar OS (53±4% and 47±4%, respectively) and RFS (43±4% and 40±4%, respectively). In this intermediate risk group, OS following alloHSCT was 55±4% as compared with 39±5% following chemotherapy (not significant) and RFS was 51±4% vs 29±5%, p=0.004, Figure 1C/D. Multivariable analysis with adjustment for covariates showed better OS (HR 0.69, p=0.04), and better RFS (HR 0.57, p=0.001) following alloHSCT as compared to chemotherapy in this intermediate risk group, with similar results for RIC and MAC. AutoHSCT was associated with a trend towards improved OS (56±6% vs 39±5%, respectively p=0.07, Figure 1C) and significantly improved RFS (41±6% vs 29±5%, p=0.04, Figure 1D) as compared to chemotherapy. Collectively, these results suggest that alloHSCT may provide better survival than chemotherapeutic PRT in patients with CN, NPM1 negative/FLT3-ITD negative or FLT3-ITD positive AML with a low allelic burden. AutoHSCT may still be an alternative if no donor is available in CR1. Given the poor prognosis in patients with a FLT3-ITD mutant to wild-type ratio of 〉 0.60, we would recommend that particular subgroup for PRT by alloHSCT using sibling or alternative donors early following CR. Figure 1 Figure 1. Disclosures No relevant conflicts of interest to declare.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
    RVK:
    RVK:
    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2014
    detail.hit.zdb_id: 1468538-3
    detail.hit.zdb_id: 80069-7
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