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  • 1
    Online Resource
    Online Resource
    Springer Science and Business Media LLC ; 2021
    In:  Synthesis Lectures on Signal Processing Vol. 12, No. 2 ( 2021-07-12), p. 1-409
    In: Synthesis Lectures on Signal Processing, Springer Science and Business Media LLC, Vol. 12, No. 2 ( 2021-07-12), p. 1-409
    Type of Medium: Online Resource
    ISSN: 1932-1236 , 1932-1694
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2021
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  • 2
    Online Resource
    Online Resource
    Springer Science and Business Media LLC ; 2011
    In:  Synthesis Lectures on Biomedical Engineering Vol. 6, No. 2 ( 2011-05-31), p. 1-129
    In: Synthesis Lectures on Biomedical Engineering, Springer Science and Business Media LLC, Vol. 6, No. 2 ( 2011-05-31), p. 1-129
    Type of Medium: Online Resource
    ISSN: 1930-0328 , 1930-0336
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2011
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  • 3
    In: Journal of Virology, American Society for Microbiology, Vol. 95, No. 13 ( 2021-06-10)
    Abstract: Kaposi’s sarcoma-associated herpesvirus (KSHV) is an important oncogenic virus previously shown to be neurotropic, but studies on neuronal cell infection and pathogenesis are still very limited. Here, we characterized the effects of KSHV infection on neuronal SH-SY5Y cells by the recombinant virus rKSHV.219, which expresses both green fluorescent protein (GFP) and red fluorescent protein (RFP) to reflect the latent and lytic phases of infection. We demonstrated that infected cells have a higher growth rate and that KSHV infection can be sustained. Interestingly, the infected cells can transition spontaneously back and forth between lytic and latent phases of infection, producing progeny viruses but without any adverse effects on cell growth. In addition, transcriptome analysis of viral and cellular genes in latent and lytic cells showed that unlike other infected cell lines, the latently infected cells expressed both latent and most, but not all, of the lytic genes required for infectious virion production. The viral genes uniquely expressed by the lytic cells were mainly involved in the early steps of virus binding. Some of the cellular genes that were deregulated in both latently and lytically infected cells are involved in cell adhesion, cell signal pathways, and tumorigenesis. The downregulated cellular CCDN1, PAX5, and NFASC and upregulated CTGF, BMP4, YAP1, LEF1, and HLA-DRB1 genes were found to be associated with cell adhesion molecules (CAMs), hippo signaling, and cancer. These deregulated genes may be involved in creating an environment that is unique in neuronal cells to sustain cell growth upon KSHV infection and not observed in other infected cell types. IMPORTANCE Our study has provided evidence that neuronal SH-SY5Y cells displayed unique cellular responses upon KSHV infection. Unlike other infected cells, this neuronal cell line displayed a higher growth rate upon infection and can spontaneously transition back and forth between latent and lytic phases of infection. Unlike other latently infected cells, a number of lytic genes were also expressed in the latent phase of infection in addition to the established latent viral genes. They may play a role in deregulating a number of host genes that are involved in cell signaling and tumorigenesis in order to sustain the infection and growth advantages for the cells. Our study has provided novel insights into KSHV infection of neuronal cells and a potential new model for further studies to explore the underlying mechanism in viral and host interactions for neuronal cells and the association of KSHV with neuronal diseases.
    Type of Medium: Online Resource
    ISSN: 0022-538X , 1098-5514
    Language: English
    Publisher: American Society for Microbiology
    Publication Date: 2021
    detail.hit.zdb_id: 1495529-5
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  • 4
    Online Resource
    Online Resource
    Institute of Electrical and Electronics Engineers (IEEE) ; 2007
    In:  IEEE Transactions on Geoscience and Remote Sensing Vol. 45, No. 12 ( 2007-12), p. 4187-4193
    In: IEEE Transactions on Geoscience and Remote Sensing, Institute of Electrical and Electronics Engineers (IEEE), Vol. 45, No. 12 ( 2007-12), p. 4187-4193
    Type of Medium: Online Resource
    ISSN: 0196-2892
    Language: Unknown
    Publisher: Institute of Electrical and Electronics Engineers (IEEE)
    Publication Date: 2007
    detail.hit.zdb_id: 2027520-1
    SSG: 16,13
    SSG: 13
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  • 5
    In: Nucleic Acids Research, Oxford University Press (OUP), Vol. 36, No. 16 ( 2008-09-01), p. 5260-5269
    Abstract: The placement of the extreme thermophile Aquifex aeolicus in the bacterial phylogenetic tree has evoked much controversy. We investigated whether adaptations for growth at high temperatures would alter a key functional component of the replication machinery, specifically DnaG primase. Although the structure of bacterial primases is conserved, the trinucleotide initiation specificity for A. aeolicus was hypothesized to differ from other microbes as an adaptation to a geothermal milieu. To determine the full range of A. aeolicus primase activity, two oligonucleotides were designed that comprised all potential trinucleotide initiation sequences. One of the screening templates supported primer synthesis and the lengths of the resulting primers were used to predict possible initiation trinucleotides. Use of trinucleotide-specific templates demonstrated that the preferred initiation trinucleotide sequence for A. aeolicus primase was 5′-d(CCC)-3′. Two other sequences, 5′-d(GCC)-3′ and d(CGC)-3′, were also capable of supporting initiation, but to a much lesser degree. None of these trinucleotides were known to be recognition sequences used by other microbial primases. These results suggest that the initiation specificity of A. aeolicus primase may represent an adaptation to a thermophilic environment.
    Type of Medium: Online Resource
    ISSN: 1362-4962 , 0305-1048
    RVK:
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2008
    detail.hit.zdb_id: 1472175-2
    SSG: 12
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  • 6
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 66, No. 3 ( 2016-03-01), p. 1200-1205
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2016
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 7
    Online Resource
    Online Resource
    MDPI AG ; 2019
    In:  Algorithms Vol. 12, No. 9 ( 2019-08-23), p. 176-
    In: Algorithms, MDPI AG, Vol. 12, No. 9 ( 2019-08-23), p. 176-
    Abstract: Epilepsy is one of the three most prevalent neurological disorders. A significant proportion of patients suffering from epilepsy can be effectively treated if their seizures are detected in a timely manner. However, detection of most seizures requires the attention of trained neurologists—a scarce resource. Therefore, there is a need for an automatic seizure detection capability. A tunable non-patient-specific, non-seizure-specific method is proposed to detect the presence and locality of a seizure using electroencephalography (EEG) signals. This multifaceted computational approach is based on a network model of the brain and a distance metric based on the spectral profiles of EEG signals. This computationally time-efficient and cost-effective automated epileptic seizure detection algorithm has a median latency of 8 s, a median sensitivity of 83%, and a median false alarm rate of 2.9%. Hence, it is capable of being used in portable EEG devices to aid in the process of detecting and monitoring epileptic patients.
    Type of Medium: Online Resource
    ISSN: 1999-4893
    Language: English
    Publisher: MDPI AG
    Publication Date: 2019
    detail.hit.zdb_id: 2455149-1
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  • 8
    Online Resource
    Online Resource
    MDPI AG ; 2021
    In:  Entropy Vol. 23, No. 10 ( 2021-10-11), p. 1324-
    In: Entropy, MDPI AG, Vol. 23, No. 10 ( 2021-10-11), p. 1324-
    Abstract: One of the important steps in the annotation of genomes is the identification of regions in the genome which code for proteins. One of the tools used by most annotation approaches is the use of signals extracted from genomic regions that can be used to identify whether the region is a protein coding region. Motivated by the fact that these regions are information bearing structures we propose signals based on measures motivated by the average mutual information for use in this task. We show that these signals can be used to identify coding and noncoding sequences with high accuracy. We also show that these signals are robust across species, phyla, and kingdom and can, therefore, be used in species agnostic genome annotation algorithms for identifying protein coding regions. These in turn could be used for gene identification.
    Type of Medium: Online Resource
    ISSN: 1099-4300
    Language: English
    Publisher: MDPI AG
    Publication Date: 2021
    detail.hit.zdb_id: 2014734-X
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  • 9
    Online Resource
    Online Resource
    MDPI AG ; 2018
    In:  Entropy Vol. 20, No. 9 ( 2018-09-14), p. 706-
    In: Entropy, MDPI AG, Vol. 20, No. 9 ( 2018-09-14), p. 706-
    Abstract: We examine how information theory has been used to study cognition over the last seven decades. After an initial burst of activity in the 1950s, the backlash that followed stopped most work in this area. The last couple of decades has seen both a revival of interest, and a more firmly grounded, experimentally justified use of information theory. We can view cognition as the process of transforming perceptions into information—where we use information in the colloquial sense of the word. This last clarification is one of the problems we run into when trying to use information theoretic principles to understand or analyze cognition. Information theory is mathematical, while cognition is a subjective phenomenon. It is relatively easy to discern a subjective connection between cognition and information; it is a different matter altogether to apply the rigor of information theory to the process of cognition. In this paper, we will look at the many ways in which people have tried to alleviate this problem. These approaches range from narrowing the focus to only quantifiable aspects of cognition or borrowing conceptual machinery from information theory to address issues of cognition. We describe applications of information theory across a range of cognition research, from neural coding to cognitive control and predictive coding.
    Type of Medium: Online Resource
    ISSN: 1099-4300
    Language: English
    Publisher: MDPI AG
    Publication Date: 2018
    detail.hit.zdb_id: 2014734-X
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  • 10
    Online Resource
    Online Resource
    Mary Ann Liebert Inc ; 2021
    In:  Neurotrauma Reports Vol. 2, No. 1 ( 2021-12-01), p. 626-638
    In: Neurotrauma Reports, Mary Ann Liebert Inc, Vol. 2, No. 1 ( 2021-12-01), p. 626-638
    Type of Medium: Online Resource
    ISSN: 2689-288X
    Language: English
    Publisher: Mary Ann Liebert Inc
    Publication Date: 2021
    detail.hit.zdb_id: 3044482-2
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