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  • 1
    Online Resource
    Online Resource
    Springer Science and Business Media LLC ; 2021
    In:  Nature Reviews Earth & Environment Vol. 2, No. 8 ( 2021-06-30), p. 570-583
    In: Nature Reviews Earth & Environment, Springer Science and Business Media LLC, Vol. 2, No. 8 ( 2021-06-30), p. 570-583
    Type of Medium: Online Resource
    ISSN: 2662-138X
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2021
    detail.hit.zdb_id: 3005281-6
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  • 2
    Online Resource
    Online Resource
    American Geophysical Union (AGU) ; 2018
    In:  Geophysical Research Letters Vol. 45, No. 12 ( 2018-06-28), p. 6186-6194
    In: Geophysical Research Letters, American Geophysical Union (AGU), Vol. 45, No. 12 ( 2018-06-28), p. 6186-6194
    Abstract: Aerosols may contain diverse and viable diazotrophs and other prokaryotes Aerosol‐associated diazotrophs can fix N 2 in the NRS Dust storms contribute significantly to N 2 fixation in NRS
    Type of Medium: Online Resource
    ISSN: 0094-8276 , 1944-8007
    Language: English
    Publisher: American Geophysical Union (AGU)
    Publication Date: 2018
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    detail.hit.zdb_id: 7403-2
    SSG: 16,13
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  • 3
    In: Photochemical & Photobiological Sciences, Springer Science and Business Media LLC, Vol. 9, No. 3 ( 2010-03), p. 304-314
    Type of Medium: Online Resource
    ISSN: 1474-905X , 1474-9092
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2010
    detail.hit.zdb_id: 2072584-X
    SSG: 12
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  • 4
    In: Blood, American Society of Hematology, Vol. 110, No. 11 ( 2007-11-16), p. 2802-2802
    Abstract: Epigenetic silencing of tumor suppressor (TS) genes is a hallmark in human leukemias, particularly through DNA methylation. Cyclin-dependent kinase inhibitors (CKI) are, among other genes, frequently found methylated in their promoter region. This epigenetic modification has been described also in acute lymphoblastic leukemia (ALL). However, the relationship between aberrant DNA methylation and protein expression of TS genes has not yet been extensively evaluated in adult ALL series. The aim of this study was to analyze in primary cells from newly diagnosed adult ALL patients, uniformly treated according to the LAL2000 GIMEMA protocol, the promoter methylation status of p73, p21, p15 and p16, evaluating in addition the p21, p15 and p16 protein expression. The DNA methylation status of promoter regions was investigated, according to cell availability, using a widely accepted method based on bisulfite modification of DNA, followed by methylation-specific PCR assay (MSP). Protein expression was evaluated by Western blot. Normal peripheral blood lymphocytes, as already described, resulted unmethylated for p73, p21, p15 and p16, and did not express the p21, p15 and p16 proteins. In ALL patients, in contrast, only the p21 promoter region was found constantly unmethylated. The p15, p16 and p73 promoter genes were found methylated in 15/37 (40.5%), 8/43 (18.6%) and 9/36 (25%) patients, respectively. Only 2/23 cases (8.6%) resulted simultaneously methylated for p15, p16 and p73. The p21 and p15 protein expression was found in 28/85 (32.9%) and 44/85 cases (51.8%), respectively. The p16 protein, in contrast, was never expressed. The p16 methylation was associated with the T-ALL (P=0.005) phenotype and with higher white blood cell (WBC) counts (P=0.027). Resistance to spontaneous induction of apoptosis was significantly associated with p21 protein expression (P=0.019) and its co-expression with p15 (P=0.049). Achievement of CR was not influenced by gene methylation status, nor by single protein expression. Interestingly, the co-expression of p15 and p21 was associated with failure to induction treatment: only 6/63 (9.5%) patients co-expressing p15 and p21 obtained a CR (P=0.027). Multivariate analysis confirmed the unfavorable role of this protein co-expression (P=0.059) on CR achievement. In contrast, once patients achieved remission, p21 protein expression was associated with a prolonged DFS, as confirmed by multivariate analysis for DFS (P=0.039). In conclusion, p15 and p21 protein expression plays an unfavorable prognostic role in adult ALL patients independently of the p73, p21, p15 and p16 gene promoter methylation status.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
    RVK:
    RVK:
    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2007
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  • 5
    In: Earth System Science Data, Copernicus GmbH, Vol. 12, No. 4 ( 2020-11-12), p. 2747-2763
    Abstract: Abstract. The last few decades have seen dramatic changes in the hydrography and biogeochemistry of the Mediterranean Sea. The complex bathymetry and highly variable spatial and temporal scales of atmospheric forcing, convective and ventilation processes contribute to generate complex and unsteady circulation patterns and significant variability in biogeochemical systems. Part of the variability of this system can be influenced by anthropogenic contributions. Consequently, it is necessary to document details and to understand trends in place to better relate the observed processes and to possibly predict the consequences of these changes. In this context we report data from an oceanographic cruise in the Mediterranean Sea on the German research vessel Maria S. Merian (MSM72) in March 2018. The main objective of the cruise was to contribute to the understanding of long-term changes and trends in physical and biogeochemical parameters, such as the anthropogenic carbon uptake and to further assess the hydrographical situation after the major climatological shifts in the eastern and western part of the basin, known as the Eastern and Western Mediterranean Transients. During the cruise, multidisciplinary measurements were conducted on a predominantly zonal section throughout the Mediterranean Sea, contributing to the Med-SHIP and GO-SHIP long-term repeat cruise section that is conducted at regular intervals in the Mediterranean Sea to observe changes and impacts on physical and biogeochemical variables. The data can be accessed at https://doi.org/10.1594/PANGAEA.905902 (Hainbucher et al., 2019), https://doi.org/10.1594/PANGAEA.913512 (Hainbucher, 2020a) https://doi.org/10.1594/PANGAEA.913608, (Hainbucher, 2020b) https://doi.org/10.1594/PANGAEA.913505, (Hainbucher, 2020c) https://doi.org/10.1594/PANGAEA.905887 (Tanhua et al., 2019) and https://doi.org/10.25921/z7en-hn85 (Tanhua et al, 2020).
    Type of Medium: Online Resource
    ISSN: 1866-3516
    Language: English
    Publisher: Copernicus GmbH
    Publication Date: 2020
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  • 6
    Online Resource
    Online Resource
    Wiley ; 2018
    In:  Limnology and Oceanography Vol. 63, No. 3 ( 2018-05), p. 1425-1443
    In: Limnology and Oceanography, Wiley, Vol. 63, No. 3 ( 2018-05), p. 1425-1443
    Abstract: To obtain qualitative information on the Black Sea's dissolved organic matter (DOM) pool, the optical properties (absorption and fluorescence) were measured in 111 samples collected across the basin. Chromophoric dissolved organic matter (CDOM) was considered at three wavelengths (254 nm, 280 nm, and 325 nm), along with the spectral slope between 275 nm and 295 nm ( S 275–295 ) and the specific ultraviolet absorbance at 254 nm (SUVA 254 ). Using parallel factor analysis, a five‐component model identified three humic‐like components, a protein‐like component, and a polycyclic aromatic hydrocarbon‐like component. In the basin's oxic layer (upper ∼ 100 m), protein‐like CDOM was elevated, likely due to the production of this labile material, while humic‐like material was low, suggesting its removal by photo‐oxidation. In the underlying waters, the protein‐like material decreased, perhaps due to the utilization of this nitrogen‐containing DOM, while humic‐like material increased, suggesting its production at depth. In the anoxic layer (lower ∼ 2000 m), dissolved organic carbon (DOC) varied by only ∼ 10% while CDOM increased with depth by a factor of approximately two; the optical properties correlated well with the H 2 S‐equivalence of mineralization, referred to here as apparent carbon mineralization (ACM), while DOC did not. The strong correlation between CDOM and ACM is similar to correlations previously identified in the open ocean that compared CDOM with apparent oxygen utilization, suggesting that CDOM accumulates as a function of mineralization, independently of the oxidizing agent (i.e., oxygen or sulfate).
    Type of Medium: Online Resource
    ISSN: 0024-3590 , 1939-5590
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2018
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    SSG: 12
    SSG: 14
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  • 7
    In: Limnology and Oceanography: Methods, Wiley, Vol. 19, No. 4 ( 2021-04), p. 235-244
    Abstract: In the oligotrophic ocean where inorganic phosphate (P i ) concentrations are low, microorganisms supplement their nutrient requirements with phosphorus (P) extracted from dissolved organic matter (DOM). Most P in DOM is bound as phosphate esters, which are hydrolyzed by phosphoesterases to P i . However, a large fraction of DOM‐P occurs as phosphonates, reduced organophosphorus compounds with a CP bond that do not yield P i through simple ester hydrolysis alone. Phosphonates require an additional step that cleaves the CP bond and oxidizes P(III) to P(V) to yield P i . Most phosphonates are metabolized by the C‐P lyase pathway, which cleaves CP bonds and oxidizes phosphonates to P i , enabling microbial assimilation. While the activity of common phosphoesterases such as alkaline phosphatase and phosphodiesterase can be measured by a fluorescent assay, a comparable method to assess C‐P lyase activity (CLA) in natural water samples does not exist. To address this, we synthesized a dansyl‐labeled phosphonate compound, and measured its hydrolysis by C‐P lyase using high performance liquid chromatography. We found that laboratory cultures of marine bacteria expressing the C‐P lyase pathway are able to hydrolyze the dansyl phosphonate, while bacteria expressing other phosphonate degradation pathways do not. Finally, we performed several field tests of the assay to measure water column profiles of CLA at Sta. ALOHA in the North Pacific Subtropical Gyre. Activity was elevated near the deep chlorophyll maximum suggesting high levels of phosphonate degradation in that region.
    Type of Medium: Online Resource
    ISSN: 1541-5856 , 1541-5856
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2021
    detail.hit.zdb_id: 2161715-6
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  • 8
    In: Limnology and Oceanography, Wiley, Vol. 68, No. 4 ( 2023-04), p. 982-1000
    Abstract: Exudates by the diatom Phaeodactylum tricornutum were incubated with a natural community of marine heterotrophic prokaryotes for 24 d in order to investigate the link between the biological lability and the molecular weight, fluorescence, and polarity of phytoplankton dissolved organic matter (DOM). Dissolved organic carbon (DOC) removal, changes in fluorescence and in the heterotrophic prokaryote abundance were followed over time both in the total exudates and in the low‐ and high‐molecular‐weight fractions. To detect changes in the polarity of proteins, reverse‐phase high‐performance liquid chromatography (HPLC) was applied to the high‐molecular‐weight fraction. Our results indicate that freshly produced phytoplankton DOM exhibits a dynamic pattern of degradation that is accompanied by large changes in the growth efficiency of the bacterial community that are likely related to changes in DOM quality. Approximately 20% of high‐molecular‐weight DOM and 40% of fluorescence attributed to protein‐like DOM were degraded over the first days of the incubation indicating that protein‐like DOM is likely a labile component of phytoplankton exudates. In contrast, fluorescence measurements suggest that humic‐like substances are resistant to bacterial degradation over the 24 d of the experiment. Despite fluctuations in the short‐term rates of high‐molecular‐weight and low‐molecular‐weight DOM removal, the relative contributions of these fractions to DOM pool were similar in the fresh exudates and at the end of our incubation experiments.
    Type of Medium: Online Resource
    ISSN: 0024-3590 , 1939-5590
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2023
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    detail.hit.zdb_id: 412737-7
    SSG: 12
    SSG: 14
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  • 9
    In: Atmosphere, MDPI AG, Vol. 10, No. 7 ( 2019-06-28), p. 358-
    Abstract: The northern Red Sea (NRS) is a low-nutrient, low-chlorophyll (LNLC) ecosystem with high rates of atmospheric deposition due to its proximity to arid regions. Impacts of atmospheric deposition on LNLC ecosystems have been attributed to the chemical constituents of dust, while overlooking bioaerosols. Understanding how these vast areas of the ocean will respond to future climate and anthropogenic change hinges on the response of microbial communities to these changes. We tested the impacts of bioaerosols on the surface water microbial diversity and the primary and bacterial production rates in the NRS, a system representative of other LNLC oceanic regions, using a mesocosm bioassay experiment. By treating NRS surface seawater with dust, which contained nutrients, metals, and viable organisms, and “UV-treated dust” (which contained only nutrients and metals), we were able to assess the impacts of bioaerosols on local natural microbial populations. Following amendments (20 and 44 h) the incubations treated with “live dust” showed different responses than those with UV-treated dust. After 44 h, primary production was suppressed (as much as 50%), and bacterial production increased (as much as 55%) in the live dust treatments relative to incubations amended with UV-treated dust or the control. The diversity of eukaryotes was lower in treatments with airborne microbes. These results suggest that the airborne microorganisms and viruses alter the surface microbial ecology of the NRS. These results may have implications for the carbon cycle in LNLC ecosystems, which are expanding and are especially important since dust storms are predicted to increase in the future due to desertification and expansion of arid regions.
    Type of Medium: Online Resource
    ISSN: 2073-4433
    Language: English
    Publisher: MDPI AG
    Publication Date: 2019
    detail.hit.zdb_id: 2605928-9
    SSG: 23
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  • 10
    In: Water, MDPI AG, Vol. 15, No. 12 ( 2023-06-12), p. 2214-
    Abstract: Fluorescence excitation-emission matrices (EEMs) are a useful tool in aquatic sciences for monitoring and studying the biogeochemistry of organic matter in natural waters and engineered systems. Yet, the interpretation of the wealth of information available in EEMs requires the use of appropriate software. Existing software tools for the analysis of EEMs, offered by instrument producers, have limited treatment capabilities, while other freely available tools are based on the MATLAB or R programming languages, which require a certain level of programming skills and a pre-installation of MATLAB or R. Here, we present TreatEEM, the first non-commercial, stand-alone Windows-based software tool that provides comprehensive treatment of EEMs. Its greatest advantage is its user-friendly and interactive graphical user interface, providing a convivial and responsive graphical feedback on any action performed on either a single spectrum (recorded at one excitation wavelength) or EEM. The capabilities of TreatEEM, including (a) basic EEM treatment, such as simple inner filter correction, scatter removal, blank subtraction, Raman normalisation, smoothing, drift alignment etc., (b) extraction of useful parameters for DOM characterisation (Coble peaks and fluorescence indices) and (c) preparation of data for PARAFAC analysis plus presentation/manipulation of obtained PARAFAC components, are described in detail, along with a basic theoretical background on these most commonly used treatment steps of EEMs.
    Type of Medium: Online Resource
    ISSN: 2073-4441
    Language: English
    Publisher: MDPI AG
    Publication Date: 2023
    detail.hit.zdb_id: 2521238-2
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