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  • 1
    In: Plant Disease, Scientific Societies, Vol. 106, No. 10 ( 2022-10-01), p. 2601-2606
    Abstract: Fusarium sambucinum is an ascomycete that has been isolated from a broad range of plant hosts, including hop (Humulus lupulus L.), where it acts as a causal agent of Fusarium canker, a disease that can impact cone quality and yield in severe cases. Current diagnostic methods rely on isolation of the fungus from plant tissue, a time- and resource-intensive process with limited sensitivity, complicated by the potential presence of other Fusarium spp. that have been reported on hop. Our objective was to develop a rapid and sensitive diagnostic tool to detect and quantify F. sambucinum in plant tissues. Using a modified random amplified polymorphic DNA PCR assay, we identified a F. sambucinum-specific marker that serves as the target in a TaqMan (hydrolysis) probe quantitative PCR (qPCR) assay that can be used to detect F. sambucinum DNA in a background of plant DNA. When used to screen 52 isolates of F. sambucinum and isolates representing 13 other Fusarium spp., the assay was robust in detecting F. sambucinum while discriminating between F. sambucinum and closely related Fusarium spp., including F. venenatum. Furthermore, this assay reliably detects as little as 1 pg of F. sambucinum DNA in a background of total DNA from plant tissue. Within-sample comparisons of this qPCR assay with traditional cultural isolation methods demonstrated the greater sensitivity of the qPCR-based method for detection of F. sambucinum. When used to screen 220 asymptomatic stem samples, the qPCR assay detected F. sambucinum in 100 samples (45.5%); by comparison, F. sambucinum was detected in only 3 samples (1.4%) by culturing methods. Moreover, quantification of F. sambucinum DNA was possible for 60 of these samples, indicating the utility of the qPCR assay for early detection. This assay should be useful in diagnostic and epidemiological applications to detect and quantify F. sambucinum from multiple hosts and environmental samples.
    Type of Medium: Online Resource
    ISSN: 0191-2917 , 1943-7692
    Language: English
    Publisher: Scientific Societies
    Publication Date: 2022
    detail.hit.zdb_id: 2042679-3
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  • 2
    In: Crop Science, Wiley, Vol. 63, No. 3 ( 2023-05), p. 1581-1591
    Abstract: The closest intercept spacing (2.54 cm) results in a percent cover that was not different from the known cover. Digital image analysis was the most consistent method for measuring a known percent cover. Digital image analysis and visual ratings were well‐correlated methods used to assess dollar spot cover. Well‐correlated methods for assessing anthracnose included the digital grid across the point intercept frame. Pigment application reduced dollar spot cover ratings regardless of the data collection method.
    Type of Medium: Online Resource
    ISSN: 0011-183X , 1435-0653
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2023
    detail.hit.zdb_id: 1480918-7
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  • 3
    In: Phytobiomes Journal, Scientific Societies, Vol. 4, No. 2 ( 2020-01), p. 178-192
    Abstract: Winter squash (Cucurbita maxima) is produced in Oregon’s Willamette Valley for edible seeds, processing, and fresh markets. Recently, prominent cultivar Golden Delicious has experienced significant yield losses due to a soilborne disease. Symptoms include stunting, root and crown rot, vascular discoloration, and late-season vine collapse. To identify potential causal pathogens, 64 fields were surveyed during 2014 to 2016 to characterize the fungal community associated with surface-disinfested root, crown, and stem tissue of diseased and healthy squash. Over 10,000 fungal isolates were identified morphologically, and 1,783 isolates were identified to species by sequencing of internal transcribed spacer and translation elongation factor 1 alpha genomic regions. Fungal communities were analyzed for association with the presence or absence of field symptoms using multivariate community analyses (indicator species analysis, multiresponse permutation procedure, and nonmetric multidimensional scaling). Although no fungal species were consistently associated with disease, five species were consistently isolated from plants regardless of the presence of symptoms and were capable of causing disease in a greenhouse pathogenicity trial: Fusarium oxysporum, F. solani, F. culmorum, Plectosphaerella cucumerina, and Setophoma terrestris. Results from community analyses confirmed that some fungi were more common in specific tissues (e.g., P. cucumerina in stems and crown, F. solani in roots and crown). Symptom severity tended to be greater in fields with a prior history of squash production, although a few fields with no prior history of squash had above average symptom ratings. The results from this study suggest that the five most common fungi may take on greater disease significance when they co-occur in a host.
    Type of Medium: Online Resource
    ISSN: 2471-2906 , 2471-2906
    Language: English
    Publisher: Scientific Societies
    Publication Date: 2020
    detail.hit.zdb_id: 2897163-2
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  • 4
    In: Crop, Forage & Turfgrass Management, Wiley, Vol. 10, No. 2 ( 2024-12)
    Abstract: This is an applied research article. This study explored the endophyte status of 19 commercially available cultivars of three cool‐season grass species. Two experiments were conducted in which insect response was measured regarding mortality after 7–10 days of feeding on each cultivar. We found that increased mortality occurred in endophyte‐infected tall fescue cultivars. Furthermore, the insect resistance response was also found to be associated with the production of mycotoxins in these cultivars.
    Type of Medium: Online Resource
    ISSN: 2374-3832 , 2374-3832
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2024
    detail.hit.zdb_id: 2806280-2
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  • 5
    In: PhytoFrontiers™, Scientific Societies
    Abstract: Hemp (Cannabis sativa) is a new crop for Oregon and Washington. These states are also home to 90% of the country’s hop (Humulus lupulus) production. Powdery mildew is a common disease that affects both hemp and hop. There are at least two species of powdery mildew fungi that may occur on hemp, including Golovinomyces ambrosiae and Podosphaera macularis, with the latter also infecting hop. Surveys were conducted throughout Oregon and Washington in 2021 and 2022 to determine the incidence and identity of powdery mildew fungi on hemp. Seventy-four fields were evaluated at three time points. In Oregon, powdery mildew was not detected in either year in early-season but was detected in 4.6 to 6.5% of fields during mid-season and 36.8 to 41.4% of fields during late-season evaluations. Powdery mildew was not detected in Washington in any survey time point in either year. We collected 204 powdery mildew samples from surveyed fields. Both P. macularis and G. ambrosiae were detected on hemp, based on diagnostic PCR assays and sequencing, comprising approximately 17 and 96% of assayed survey samples, respectively. All P. macularis samples that amplified were mating type MAT1-1, consistent with the population occurring on hop in the region. Thirty-nine convenience samples were collected outside of surveyed fields and included the first detections of both G. ambrosiae and P. macularis on hemp in Washington. The presence of P. macularis on hemp has possible ramifications for hop producers in the region, including disruption of established management systems and introduction of novel isolates.
    Type of Medium: Online Resource
    ISSN: 2690-5442
    Language: English
    Publisher: Scientific Societies
    Publication Date: 2023
    detail.hit.zdb_id: 3046436-5
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  • 6
    In: Plant Disease, Scientific Societies
    Abstract: Hemp (Cannabis sativa L.) is grown for cannabinoid oil production in Oregon. During the 2021 and 2022 growing seasons, plants with leaf curling, puckering, chlorotic mosaic, fasciation, and vein clearing were observed in disease surveys of Oregon hemp fields (Fig. 1). Symptoms were present on 1-10% of 2–4-month-old plants in fields located in Benton, Clackamas, Deschutes, Jackson, Josephine, Lane, Linn, Marion, Morrow, and Polk counties between July and September. Leaf and stem samples were collected from 38 symptomatic plants. Symptoms resembled those caused by beet leafhopper-vectored (BLH, Circulifer tenellus Baker) curtovirus or phytoplasma infection. Therefore, total nucleic acids were extracted (Dellaporta et al. 1983) from leaf material, and PCR conducted on all 38 samples to detect curtovirus coat proteins (BCTV-1/2 primers; Rondon et al. 2016) and 16S rRNA of phytoplasmas (nested primers P1/P7 followed by FU/RU; Lorenz et al. 1995). No curtoviruses or phytoplasmas were detected in any samples. Spiroplasma citri is also transmitted by BLH, so PCR was conducted with primers targeting the putative P89 adhesin gene and spiralin gene of S. citri (Yokomi et al. 2008). For all samples, PCR using P89F/R primers resulted in a 707 bp amplicon, and a 675 bp amplicon with Spiralin-f/r primers. PCR products were purified with ExoSapIT (Applied Biosystems, Waltham, MA), and two representative samples (ScH1; ScH2) were Sanger sequenced (EuroFins, Lancaster, PA) in the forward and reverse direction. Pairwise aligned P89 sequences were found to be 99 to 100% (ScH1: 633/637 bp; ScH2: 654/654 bp) identical to S. citri accession KT377386. Aligned/span 〉 spiralin sequences were found to be 99 to 100% (ScH1: 661/664 bp; ScH2: 647/647 bp) identical to S. citri accession CP013197 in the NCBI GenBank Database. All sequences were deposited into GenBank (accession no. OQ969983, OQ992766, OQ969984, OQ969986). Frozen leaf material from one sample was used to culture S. citri according to Lee and Davis (1984). Leaf tissue was surface sterilized for 60 s in 1% NaOCl in 70% ethanol, cut into pieces in LD8 broth, and incubated for 25 min at 25˚C. The solution was passed through a 0.45um filter and incubated for 14 days at 30°C with constant shaking (150 rpm). Then, cultures were centrifuged for 2 min at 12,000 rpm to pelletize, resuspended in 100µL sterile distilled water and passed through a 0.2um filter. From this culture, 2 µL of broth was used as template for both the P89F/R and Spiralin-f/r primer sets. Amplicons were purified and sequenced as above (accession nos. OQ969982, OQ969985). Leaf tissue from both representative samples (ScH1 and ScH2) were positive for S. citri using double antibody sandwich ELISA (Agdia, Inc., Elkhart, IN) following manufacturer instructions. These results from sequencing, culturing, and ELISA testing indicate the hemp samples were infected with S. citri. To our knowledge this is the first report of disease symptoms in hemp associated with S. citri in Oregon and the Pacific Northwest. Infection by S. citri can limit yield by reducing photosynthetic capability of the plant and distortion of plant growth. Other pathogens like curtoviruses and phytoplasmas have also been detected in hemp in Oregon and the U.S. (Hu 2021; Rivedal et al. 2022), and the addition of S. citri associated with disease symptoms indicates a need for BLH management research. This discovery has implications for arid regions with other S. citri hosts including cruciferous plants, carrots, and tree fruit crops, all of which were grown near the sampled hemp fields in this study.
    Type of Medium: Online Resource
    ISSN: 0191-2917 , 1943-7692
    Language: English
    Publisher: Scientific Societies
    Publication Date: 2023
    detail.hit.zdb_id: 2042679-3
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  • 7
    Online Resource
    Online Resource
    Springer Science and Business Media LLC ; 2021
    In:  American Journal of Potato Research Vol. 98, No. 4 ( 2021-08), p. 267-284
    In: American Journal of Potato Research, Springer Science and Business Media LLC, Vol. 98, No. 4 ( 2021-08), p. 267-284
    Type of Medium: Online Resource
    ISSN: 1099-209X , 1874-9380
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2021
    detail.hit.zdb_id: 2395546-6
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  • 8
    In: Plant Disease, Scientific Societies, Vol. 106, No. 6 ( 2022-06-01), p. 1660-1668
    Abstract: Winter squash (Cucurbita maxima cultivar Golden Delicious) produced in Oregon’s Willamette Valley for edible seed production has experienced significant yield losses because of a soilborne disease. The symptoms associated with this disease problem include root rot, crown rot, and vascular discoloration in the stems, leading to a severe late season wilt and plant collapse. Through field surveys, Fusarium oxysporum, F. solani, F. culmorum-like fungi, Plectosphaerella cucumerina, and Setophoma terrestris were identified to be associated with diseased tissues, and each produced symptoms of root rot, crown rot, or stem discoloration in preliminary pathogenicity trials. In this study, 219 isolates of these species were characterized by molecular identity analyses using BLAST of the internal transcribed spacer and translation elongation factor 1 alpha genomic regions and by pathogenicity testing in outdoor, large-container trials. Molecular identity analyses confirmed the identity of isolates at 99 to 100% similarity to reference isolates in the database. In pathogenicity experiments, F. solani produced the most severe symptoms, followed by F. culmorum-like fungi, F. oxysporum, P. cucumerina, and S. terrestris. Some treatments of mixed-species inoculum produced symptom severity greater than what was expected from individual species. In particular, the mixture of F. culmorum-like fungi, F. oxysporum, and P. cucumerina and the mixture of F. culmorum-like fungi, F. solani, and S. terrestris had symptom ratings as high as that of F. solani by itself. Results indicate that this soilborne disease is caused primarily by Fusarium solani, but interactions between the complex of F. solani, F. culmorum-like fungi, F. oxysporum, and P. cucumerina can exacerbate disease severity.
    Type of Medium: Online Resource
    ISSN: 0191-2917 , 1943-7692
    Language: English
    Publisher: Scientific Societies
    Publication Date: 2022
    detail.hit.zdb_id: 2042679-3
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  • 9
    Online Resource
    Online Resource
    Springer Science and Business Media LLC ; 2022
    In:  European Journal of Plant Pathology Vol. 163, No. 2 ( 2022-06), p. 415-428
    In: European Journal of Plant Pathology, Springer Science and Business Media LLC, Vol. 163, No. 2 ( 2022-06), p. 415-428
    Abstract: Choke disease, which is caused by Epichloë typhina , was first reported in orchardgrass seed production fields in the Willamette Valley, Oregon in 1997 and has continued to persist in the system. The disease can cause up to 30% losses in seed yield. Unlike many Epichloë species that are seed transmitted, it is unclear how infection of orchardgrass by E. typhina occurs in the field, or how the disease spreads within plants. In this study, the overall incidence of choke on trap plants placed in a choke-infested field was 41% in 2018 and 9% in 2019. Similar incidence of infection occurred when exposed before (39%) or after (43%) swathing in 2018. Contrary to our hypothesis, plants sprayed with an artificial honeydew had a significantly lower incidence of infection (32%) when compared to the controls (48%). An examination of the spread of E. typhina within tillering plants revealed that development of infected tillers was greater than development of uninfected tillers, which could contribute to the gradual increase in choke in fields over time. These studies contribute to a better understanding of how choke is spread within plants and in orchardgrass seed production fields, which is an important step towards developing control methods to reduce choke in orchardgrass seed production fields.
    Type of Medium: Online Resource
    ISSN: 0929-1873 , 1573-8469
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2022
    detail.hit.zdb_id: 1477679-0
    SSG: 12
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  • 10
    Online Resource
    Online Resource
    Scientific Societies ; 2021
    In:  Plant Health Progress Vol. 22, No. 2 ( 2021-01-01), p. 176-181
    In: Plant Health Progress, Scientific Societies, Vol. 22, No. 2 ( 2021-01-01), p. 176-181
    Abstract: Fusarium crown rot of winter wheat is an economically important disease in most regions where winter wheat is grown. Fusarium crown rot is caused by Fusarium culmorum and F. pseudograminearum. This diagnostic guide details information to aid in field, molecular, and morphological diagnosis of Fusarium crown rot.
    Type of Medium: Online Resource
    ISSN: 1535-1025
    Language: English
    Publisher: Scientific Societies
    Publication Date: 2021
    detail.hit.zdb_id: 2115009-6
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