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  • 1
    In: STEM CELLS, Oxford University Press (OUP), Vol. 23, No. 6 ( 2005-06), p. 828-833
    Type of Medium: Online Resource
    ISSN: 1066-5099 , 1549-4918
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2005
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  • 2
    In: Blood, American Society of Hematology, Vol. 110, No. 11 ( 2007-11-16), p. 2918-2918
    Abstract: Objectives: Acquired resistance to imatinib (IM) in patients with chronic myeloid leukaemia (CML) is frequently due to mutations of the BCR-ABL kinase domain (KD). Current thinking holds that this results from the selection of pre-existing mutant clones on IM. As new BCR-ABL inhibitors with differential activity against KD mutant BCR-ABL have become available, precise quantification of key mutations even at a low level is required to adequately monitor responses. Here we report that the occurrence of G250E, Q252H, Y253F/H, E255K/V, T315I, F317L, F359V mutations at the time of IM resistance is independently associated with a high maximum IM dose. Patients and Methods: We have developed highly specific allele-specific ligation-PCR assays (L-PCR) to accurately quantify a panel of frequent KD mutations, including G250E, Q252H, Y253F/H, E255K/V, T315I, F317L, F359V. In limiting dilution experiments the L-PCR assays routinely detect between 0.05 and 0.1% of mutant allele in total BCR-ABL, and their average dynamic range is in the range of 4.5 log. Forty-three patients with imatinib failure were analyzed. The median age was 60 (range 20 – 75) years and the median disease duration 64 (range 3–213) months. Eleven patients were in blast crisis, 20 in accelerated phase and 12 in chronic phase. Results: Patients were treated with chemotherapy (48%) and/or interferon alpha (76%) prior to IM. The median maximal IM dose was 600 (range 500–800) mg and the median duration of total therapy until resistance was 15.5 (range 1 to 75) months. Eighteen patients (42%) had dose reductions due to toxicity. At the time of IM resistance, clonal evolution was present in 21/41 (47%) of the patients. L-PCR identified 50 mutations in 29/43 patients (67%) (table1). One, 2, 3 or 4 different mutations were identified in 14, 11, 2 and 2 patients, respectively. The T315I and E255K/V mutations accounted for 32/50 (64%) of all mutations, while Q252H and Y253H were not detected. Twelve mutations (24%) were confirmed by direct sequencing (DS) and an additional M315T mutation and a K247R polymorphism were detected. Thirty eight (76%) mutations were negative by DS for the corresponding mutation from the L-PCR panel but additional mutations (L248V, M351T, H396Rx2, L298Vx2) were identified. All 38 L-PCR positive mutations were confirmed in a second independent experiment. The mutated clone was significantly smaller in mutations with no confirmation by DS (median 0.2, range 0.05–12.63%) compared to positive by DS (median 40.76, range 13.58–100%, p=0.003, Wilcoxon test). The detection of one or more mutations was significantly more frequent in patients with a maximum IM dose of 800mg (n=15/17, 88%) compared to less than 800mg (14/26, 53%, p= 0.02 Fisher’s exact test). Multivariate analysis (Wald forward) confirmed that a maximum IM peak dose of 800mg is an independent prognostic parameter to detect a mutation from the L-PCR panel at the time of IM resistance. Conclusions:High sensitive testing with L-PCR detects mutations with 4-fold increased frequency compared to direct sequencing.Mutations, including p-loop and T315I, may be selected by exposure to higher drug levels.The predominance of T315I and E255K/V mutations at a low level is consistent with the findings in newly diagnosed patients with Ph+ALL (Pfeifer et al. Blood 2007).
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2007
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  • 3
    In: Journal of Pediatric Surgery, Elsevier BV, Vol. 43, No. 7 ( 2008-7), p. 1284-1294
    Type of Medium: Online Resource
    ISSN: 0022-3468
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    Language: English
    Publisher: Elsevier BV
    Publication Date: 2008
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  • 4
    In: Blood, American Society of Hematology, Vol. 110, No. 11 ( 2007-11-16), p. 321-321
    Abstract: Major cause of acquired resistance to imatinib in patients (pts) with chronic myeloid leukemia (CML) are BCR-ABL kinase domain (KD) mutations. Various techniques to detect KD mutations have been employed, resulting in different frequencies of mutations and a heterogeneous pattern of individual mutations. Thus, we sought to compare direct sequencing (DS, Mannheim and Tromsø), denaturing high-performance liquid chromatography (DHPLC, Mannheim), and two different quantitative allele-specific PCR (A-PCR; ARMS assay, Tromsø and Ligation [L]-PCR technique, Leipzig) approaches for a panel of six key mutations within three different European laboratories. Blinded samples of 30 imatinib resistant CML pts were investigated before start of second line therapy with dasatinib (n=18) or nilotinib (n=12) and after three and six months on therapy. Pts (16 m, 14 f; median age 63 years, range 39–78) were in chronic phase (n=22), accelerated phase (n=6), or myeloid blast crisis (n=2). Analyzed sequences of DS and DHPLC overlapped at ABL1a amino acids 207 to 414 with an estimated detection sensitivity of 10% and 0.5–1% for DS and DHPLC, respectively. A-PCR was performed for a panel of five P-loop mutations (G250E, Y253F/H, E255K/V) and T315I according to the ARMS- and L-PCR technique with a sensitivity of 0.1–1% and 0.05–0.1%, respectively. In total 87/90 (97%) samples were comparable between DS and DHPLC. Fourty-five mutations affecting 15 different amino acids were detected by both techniques. DS identified one additional M244V, whereas DHPLC 12 additional mutations (Y253H, D276G, T277A, T315I, F317L (n=2), L324Q (n=2), L387F (n=3), H396R). All mutations detected by DHPLC within the A-PCR panel were confirmed by both A-PCR techniques and 17 additional mutations [G250E (n=2), Y253H (n=4), E255K (n=5), E255V, T315I (n=5)] were identified by both A-PCR techniques with a median proportion of mutant alleles of 1.4% (range 0.04–83%). Furthermore, 37 additional mutations [G250E (n=2), Y253H (n=5), E255K (n=3), E255V (n=2), T315I (n=25)] were detected by one A-PCR technique only with a median proportion of mutant alleles of 0.57% (range 0.095–25%). The quantitative values of both A-PCR techniques showed a significant correlation (r=0.67, p 〈 0.001). On follow-up samples, the number of BCR-ABL T315I mutant clones increases significantly by A-PCR from 5/30 (17%) at baseline to 17 (57%) after 3 months of treatment (p=0.003). This was neither associated with lack of response (ratio BCR-ABL/ABL 〉 1% at 6 months) nor with dasatinib or nilotinib treatment. We conclude: DHPLC detects more mutations compared to DS. A-PCR further increase the number of detected mutations and confirm by part mutations at low level. Selection of low level T315I mutants on dasatinib and nilotinib without subsequent non response confirms the cross resistance of both inhibitors for T315I and supports also the varying transforming capacity of T315I mutants to a fully resistant phenotype. Although the findings of low level T315I mutations are still investigational at the moment these selected pts could probably profit from a combination therapy including a T315I inhibitor in the future.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
    RVK:
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2007
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  • 5
    In: Blood, American Society of Hematology, Vol. 108, No. 11 ( 2006-11-01), p. 2191-2191
    Abstract: Mutations of the ABL kinase domain (KD) are the most frequent cause of acquired resistance to imatinib in patients with chronic myeloid leukaemia (CML), most likely due to selection of mutated clones on imatinib treatment. As new Bcr-Abl inhibitors become available, precise quantification of low level mutation will be required to monitor response. Here we report our results evaluating patients with advanced phase or imatinib resistant CML for KD mutations using a newly developed, sensitive and quantitative Ligation PCR (L-PCR) assay in comparison to direct sequencing. Twenty eight CML patients on imatinib (17 male, 11 female) with a median age of 62 (range 20 to 75) years in blast crisis (n=4), accelerated phase (n=12) or imatinib failure (n= 12) were analysed using both approaches. Sequencing of the ABL KD was performed using forward and reverse primers to ABL exons 4 and 7, while the L-PCR analysis focussed initially on the E255K and T315I mutations. Briefly, pairs of probes specific for either wild type (WT) or mutant BCR-ABL were added to the RT-PCR amplified ABL KD, then ligated under conditions optimized for specificity. Ligated probe pairs were than amplified in a quantitative PCR using universal primers. Quantification was performed using internal cell-in-cell dilutions of BaF3 cell lines expressing wt and mutant BCR/ABL and values were expressed as % BCR-ABLmut/ BCR-ABLWT. In our hands, this assay can detect 0.05 – 0.1% T315I and 0.01–0.05% E255K in a BCR-ABL WT background. The inter-assay variation at the lowest detection level was only 6.7 and 4,7% for the mutations T315I and E255K respectively. Results were scored positive only if two independent runs showed amplification exceeding the lowest controls. All patients were treated with a median imatinib dose of 600 (range 500–800) mg for a median of 10.5 (range 1 to 74) months. Dose reductions due to toxicity were necessary in 8 (29%) patients. Direct sequencing revealed E255K or T315I mutations in three patients, each with more than 20% mutated allele. L-PCR revealed these three patients plus three more with lower levels of mutation (T315I, 0.46% and E255K, 0.16, 0.17%). The patient with 0.46% T315I also showed G250E by sequencing. This patient was subsequently treated with Dasatinib but failed to respond. In twenty two patients negative by L-PCR, sequencing of exons 4 and 7 showed 15 (53%) to be WT, 6 (21%) to have KD mutations F317L, F359V (n=2), H396R, M315T with F359V, Y253F with the K247R polymorphism and one to have an 80 base pair deletion 3′ of the p-loop. In conclusion the L-PCR assay was able to detect T315I and E255K mutations in twice as many patients as did direct sequencing. These low-level mutations would most probably also have been missed by the D-HPLC-based screening. The fact that only L-PCR detected this mutation in a patient who failed to respond to dasatinib implies that the assays generate clinically useful information. mutations. The study is currently being expanded to include further mutations and longitudinal monitoring of a larger cohort of patients.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2006
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  • 6
    In: Experimental Hematology, Elsevier BV, Vol. 37, No. 2 ( 2009-02), p. 294-301
    Type of Medium: Online Resource
    ISSN: 0301-472X
    RVK:
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2009
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  • 7
    In: Blood, American Society of Hematology, Vol. 108, No. 11 ( 2006-11-16), p. 4171-4171
    Abstract: The side population (SP) phenotype resulting from efflux of the fluorescent dye Hoechst 33342 has been associated with high quality stem cells from both hematopoietic and non-hematopoietic organs. While expression of the transporter proteins MDR1 and ABCG2 has been strongly implicated in the SP phenotype of murine bone marrow stem cells, relatively little is known about the SP in human umbilical cord blood. The aim of this study was to investigate the relationship between the expression of common stem cell markers, the SP phenotype and the expression of the MDR1 and ABCG2 transporters in both fresh and cryopreserved umbilical cord blood. Assays of long-term Cobblestone Area Forming Cell (CAFC) activity at week 13 confirmed a 22 fold enrichment (p=0,002) of CAFC potential in the sorted SP (0,11% +/−0,06%, n=7) compared to the control living lymphocyte population subjected to Hoechst-free preparation and sorting (0,005% +/−0,0023%, n=6). SP cells from fresh (n=3) and cryopreserved (n=4) blood samples performed equally well in CAFC assays (p=0,28). A multiparameter FACS analysis involving a combination of four colors plus SP controlled with verapimil revealed the CD133+ and CD34+ cells to be distributed towards the upper part of the SP plot and to extend into the verapimil-sensitive SP. However, only 20,5% +/−15,6% (n=9) of the SP cells expressed either CD34 or CD133. ABCG2+ cells were found to be distributed throughout the main population but to be specifically absent from the side population. Fresh and cryopreserved blood samples were similar in all of these respects. In contrast to the SP cells, the MACS-purified ABCG2+ population failed to grow in cytokine-supplemented media and yielded no colonies in the CAFC assay. Semi-quantitative RT-PCR assays comparing cDNA prepared from the SP to that from the entire mononuclear population revealed a moderate but consistent enrichment of MDR1 mRNA in the SP, but no enrichment of ABCG2 mRNA. A similar comparison of the MACS-separated CD133+ (n=4) and CD133− (n=3) cells revealed the CD133+ population to be enriched (4 fold) for MDR1 but depleted (19-fold) for ABCG2 mRNA. We conclude that ABC transporters other than ABCG2 are responsible for the SP phenotype in human UCB; that MDR1 remains a potential candidate in this respect and that the frequency, immunophenotype and CAFC function of SP cells from fresh and cryopreserved blood are indistinguishable.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
    RVK:
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2006
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  • 8
    In: Hepatology, Ovid Technologies (Wolters Kluwer Health), Vol. 46, No. 3 ( 2007-09), p. 861-870
    Type of Medium: Online Resource
    ISSN: 0270-9139 , 1527-3350
    URL: Issue
    Language: English
    Publisher: Ovid Technologies (Wolters Kluwer Health)
    Publication Date: 2007
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  • 9
    In: Cellular Reprogramming, Mary Ann Liebert Inc, Vol. 15, No. 1 ( 2013-02), p. 68-79
    Type of Medium: Online Resource
    ISSN: 2152-4971 , 2152-4998
    Language: English
    Publisher: Mary Ann Liebert Inc
    Publication Date: 2013
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