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  • 1
    In: Blood, American Society of Hematology, Vol. 139, No. 5 ( 2022-02-03), p. 732-747
    Abstract: Splenic marginal zone B-cell lymphoma (SMZL) is a heterogeneous clinico-biological entity. The clinical course is variable, multiple genes are mutated with no unifying mechanism, and essential regulatory pathways and surrounding microenvironments are diverse. We sought to clarify the heterogeneity of SMZL by resolving different subgroups and their underlying genomic abnormalities, pathway signatures, and microenvironment compositions to uncover biomarkers and therapeutic vulnerabilities. We studied 303 SMZL spleen samples collected through the IELSG46 multicenter international study (NCT02945319) by using a multiplatform approach. We carried out genetic and phenotypic analyses, defined self-organized signatures, validated the findings in independent primary tumor metadata and determined correlations with outcome data. We identified 2 prominent genetic clusters in SMZL, termed NNK (58% of cases, harboring NF-κB, NOTCH, and KLF2 modules) and DMT (32% of cases, with DNA-damage response, MAPK, and TLR modules). Genetic aberrations in multiple genes as well as cytogenetic and immunogenetic features distinguished NNK- from DMT-SMZLs. These genetic clusters not only have distinct underpinning biology, as judged by differences in gene-expression signatures, but also different outcomes, with inferior survival in NNK-SMZLs. Digital cytometry and in situ profiling segregated 2 basic types of SMZL immune microenvironments termed immune-suppressive SMZL (50% of cases, associated with inflammatory cells and immune checkpoint activation) and immune-silent SMZL (50% of cases, associated with an immune-excluded phenotype) with distinct mutational and clinical connotations. In summary, we propose a nosology of SMZL that can implement its classification and also aid in the development of rationally targeted treatments.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2022
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  • 2
    In: European Heart Journal - Quality of Care and Clinical Outcomes, Oxford University Press (OUP), Vol. 5, No. 4 ( 2019-10-01), p. 334-342
    Abstract: We evaluated the 1-year clinical events, pharmacological management, and quality of life in a contemporary cohort of stable coronary artery disease (CAD) patients managed by cardiologists. Methods and results START (STable Coronary Artery Diseases RegisTry) was a prospective, observational, nationwide study that enrolled 5070 stable CAD patients over 3 months in 183 cardiology centres in Italy. At 1 year, 4790 (94.5%) patients had data on vital status. Death occurred in 107 (2.2%) patients and the cause of death was cardiovascular in 41 (38.3%) of cases. Among the 4775 patients with follow-up data on clinical events available, a hospitalization due to cardiovascular and non-cardiovascular causes occurred in 523 (11.0%) and in 231 (4.8%) of cases, respectively. Over 60% of patients reported as ‘no problems’ in all domains (61.4–84.5%) of the EuroQoL quality of life 5D-5L questionnaire. Among the 3239 patients with clinical visit/telephone interview at follow-up, in whom optimal medical therapy (OMT; aspirin or thienopyridine, β-blocker, and statin) was prescribed at enrolment, 2971 (91.7%) were still receiving OMT at follow-up. At multivariable analysis, only increasing age (odds ratio 0.98; 95% confidence interval 0.97–0.99; P = 0.04) resulted as independent negative predictor of OMT persistence at 1 year from enrolment. Conclusion In this large, contemporary registry, stable CAD patients managed by cardiologists presented a high rate of clinical events at 1 year. Nevertheless, the persistence to OMT and quality of life appeared reasonable.
    Type of Medium: Online Resource
    ISSN: 2058-5225 , 2058-1742
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2019
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  • 3
    In: Nutrition, Metabolism and Cardiovascular Diseases, Elsevier BV, Vol. 33, No. 12 ( 2023-12), p. 2398-2405
    Type of Medium: Online Resource
    ISSN: 0939-4753
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2023
    detail.hit.zdb_id: 2050914-5
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  • 4
    In: Journal of Clinical Oncology, American Society of Clinical Oncology (ASCO), Vol. 41, No. 15 ( 2023-05-20), p. 2827-2842
    Abstract: Myelodysplastic syndromes (MDS) are heterogeneous myeloid neoplasms in which a risk-adapted treatment strategy is needed. Recently, a new clinical-molecular prognostic model, the Molecular International Prognostic Scoring System (IPSS-M) was proposed to improve the prediction of clinical outcome of the currently available tool (Revised International Prognostic Scoring System [IPSS-R]). We aimed to provide an extensive validation of IPSS-M. METHODS A total of 2,876 patients with primary MDS from the GenoMed4All consortium were retrospectively analyzed. RESULTS IPSS-M improved prognostic discrimination across all clinical end points with respect to IPSS-R (concordance was 0.81 v 0.74 for overall survival and 0.89 v 0.76 for leukemia-free survival, respectively). This was true even in those patients without detectable gene mutations. Compared with the IPSS-R based stratification, the IPSS-M risk group changed in 46% of patients (23.6% and 22.4% of subjects were upstaged and downstaged, respectively). In patients treated with hematopoietic stem cell transplantation (HSCT), IPSS-M significantly improved the prediction of the risk of disease relapse and the probability of post-transplantation survival versus IPSS-R (concordance was 0.76 v 0.60 for overall survival and 0.89 v 0.70 for probability of relapse, respectively). In high-risk patients treated with hypomethylating agents (HMA), IPSS-M failed to stratify individual probability of response; response duration and probability of survival were inversely related to IPSS-M risk. Finally, we tested the accuracy in predicting IPSS-M when molecular information was missed and we defined a minimum set of 15 relevant genes associated with high performance of the score. CONCLUSION IPSS-M improves MDS prognostication and might result in a more effective selection of candidates to HSCT. Additional factors other than gene mutations can be involved in determining HMA sensitivity. The definition of a minimum set of relevant genes may facilitate the clinical implementation of the score.
    Type of Medium: Online Resource
    ISSN: 0732-183X , 1527-7755
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    Language: English
    Publisher: American Society of Clinical Oncology (ASCO)
    Publication Date: 2023
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  • 5
    In: Blood, American Society of Hematology, Vol. 106, No. 11 ( 2005-11-16), p. 791-791
    Abstract: According to evidence- and consensus-based practice guidelines (Haematologica2002;87:1286–306), red cell transfusion is the therapy of choice for the majority of patients with myelodysplastic syndrome (MDS) and symptomatic anemia. Previous studies have shown that widespread organ dysfunction can result from transfusion iron overload developing in non-thalassemic adults (Schafer et al, N Engl J Med1981;304:319–24; Cazzola et al, Blood1988;71:305–12). In this study, we evaluated the effect of transfusion dependency and secondary iron overload on survival of MDS patients classified according to WHO criteria. Four hundred and sixty-seven consecutive patients with a diagnosis of de novo MDS made at the IRCCS Policlinico San Matteo, University of Pavia Medical School, Pavia, Italy, between 1992 and 2002 were retrospectively evaluated and reclassified according to the WHO criteria. The effects that developing transfusion dependency or secondary iron overload had on survival were evaluated by applying Cox proportional hazards regression with time-dependent covariates. Transfusion-dependent patients had a significantly shorter overall survival (OS) and leukemia-free survival (LFS) than did patients who did not become transfusion-dependent (HR=2.16, P & lt;.001 and HR=2.02, P & lt;.001, respectively). Transfusion burden, calculated as the number of transfusions per month, was found to have a significant effect on both OS (HR=1.35, P & lt;.001) and LFS (HR=1.75, P & lt;.001). These effects were maintained after accounting for cytogenetics. We then assessed the survival of transfusion-dependent and non-transfused patients considering non-leukemic death as an end-point. In the first 50 months of follow-up transfusion-dependent patients had a significantly worse survival than those who did not require transfusions (HR=1.98, P=.01). Cardiac failure was significantly more frequent in transfusion-dependent patients (P=.01). Focusing the analysis on WHO subgroups, transfusion requirement affected both the OS and LFS of patients with RA, RARS or MDS with del(5q) (HR=1.54, P & lt;.001 and HR=1.44, P=.05, respectively), and of those with RCMD or RCMD-RS (HR=1.87, P=.04 and HR=1.54, P=.02, respectively), while it showed no effect on the survival of RAEB patients. Finally, we evaluated the prognostic value of patients with MDS developing iron overload during their follow-up. The development of secondary iron overload significantly affected survival (P & lt;.001) with a HR of 1.36 for every 500 ng/mL increase in serum ferritin. The effect of iron overload was maintained after adjusting for transfusion burden (HR=1.30, P=.003). With respect to WHO subgroups, the effect of secondary iron overload was still present in patients with RA/RARS (HR=1.51, P & lt;.001), while it was not significant in those with RCMD/RCMD-RS (HR=1.34, P=.20). In conclusion, these findings show that the development of transfusion dependency significantly worsens the survival of MDS patients. Although this poor prognosis partly reflects the severity of bone marrow failure, our observations also suggest that development of secondary iron overload per se can worsen survival of transfusion-dependent patients. These individuals may therefore considerably benefit from therapeutic approaches aimed at reducing transfusion needs and/or at preventing secondary iron overload.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2005
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  • 6
    In: Blood, American Society of Hematology, Vol. 114, No. 22 ( 2009-11-20), p. 760-760
    Abstract: Abstract 760 Splenic marginal zone B-cell lymphoma (SMZL) is frequently associated with HCV infection and with autoimmune disorders. Subsets of “stereotyped” Complementarity-Determining Region 3 (HCDR3) sequences are a frequent feature of CLL patients. The aim of this study was to perform clustering analysis of HCDR3 aminoacid (AA) sequences in SMZL. We characterized IGHVDJ rearrangements from 133 SMZL patients diagnosed according to Matutes criteria (Leukemia, 2008) and performed clustering analysis of SMZL HCDR3 AA sequences. Sources for analysis were bone marrow and peripheral blood in 106 cases and spleen tissue + lymph node in 27 cases. SMZL HCDR3 sequences were also compared to 27,413 productive, non redundant HCDR3 AA sequences retrieved from public databases (EMBL, NCBI, IMGT/LIGM-DB; 25,655 sequences) and from our unpublished laboratory databases (1,758 sequences), including sequences from malignant B-cell clones (3,197 CLL, 86 SMZL, 1,131 other B-cell malignancies) and from non malignant B-cell repertoire (22,999 sequences). Alignments were performed using the multiple sequence alignment software ClustalX (2.0). Criteria for assigning HCDR3 AA sequences to stereotyped subsets included AA identity ≥60%, sharing of junction residues and/or usage of the same IGHD-J genes (Stamatopoulos et al, 2007). Male/female ratio of the 133 SMZL patients was 0.7:1; median age at diagnosis was 67 years (40-82 years). HCV serology was positive in 25/125 cases (20%). Median follow-up was 2.7 yrs (range 1-20 yrs); 5-yrs OS for the entire series was 80% and 5-yrs PFS was 39%. The most frequent IGHV families were IGHV3 (n=66, 50%), IGHV1 (n=40, 30%) and IGHV4 (n=23, 17%); the most frequent IGHV genes were IGHV1-2 (n=26, 20%), IGHV 3-23 (n=24, 18%), and IGHV 4-34 (n=10, 8%). Using the 98% identity cut-off value, 40/133 (30%) sequences were “unmutated” (15 with 100% identity, 10 with 99-99.9%, 15 with 98-98.9%). By means of clustering analysis, 16/133 SMZL cases (12%) met the minimal criteria to be included in subsets with “stereotyped” HCDR3. Additional 7/86 (8%) SMZL public sequences were included in subsets. We identified 3 major groups of HCDR3 subsets: 1) “SMZL-biased subsets”: 5 novel subsets were composed only by HCV-negative SMZL cases: 9 from this study cohort and 3 from public databases. Two subsets included both SMZL cases from this study series and SMZL cases from public databases, while 3 subsets were composed by 3 pairs of SMZL from the present study series; 2) “CLL subsets”: 4 SMZL cases (2 from our series) were assigned to 4 subsets previously reported in CLL (subsets 1, 6, 9, 25). In addition, 2 SMZL cases (1 from our series) formed 2 novel subsets with CLL cases; 3) “Non-Hodgkin's lymphoma subsets”: in 5 new subsets HCDR3 of 5 SMZL cases (4 from present series) were homologous to HCDR3 of non-splenic MZL and extranodal indolent lymphomas; in particular 2 HCV+ SMZL clustered with 1 HCV-related lymphoma and 1 HCV+ low grade B-cell lymphoma with splenomegaly, respectively. Distribution of mutated and unmutated cases did not differ between SMZL cases belonging or not to HCDR3 subsets. PFS was statistically shorter for cases belonging to “SMZL-biased subsets” (5-yrs PFS 14%) compared to the remaining cases of the series (5-yrs PFS 41%) (p=0.04). Mutational status was not predictive of OS and PFS. Multivariate analysis selected “SMZL-biased” clustering [hazard ratio (HR), 2.4; 95% CI: 1.003-5.684; p = 0.04], but not mutational status, as predictor of PFS. Sequencing of light chains and 3D modeling of cases belonging to subsets are ongoing. In conclusion, 1) “SMZL-biased” stereotyped HCDR3 sequences appear to be unique to HCV-negative SMZL and suggest a potential role for antigen(s) different from HCV in SMZL lymphomagenesis, and may determine a worse outcome in a subset of SZML patients; 2) only a small number of SMZL cases is related to previously reported CLL subsets; 3) SMZL also share stereotyped HCDR3 sequences with non-splenic MZL and extranodal indolent lymphomas, suggesting a role for a common antigen stimulation in the pathogenesis of these B-cell malignancies. Disclosures: No relevant conflicts of interest to declare.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2009
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  • 7
    In: Genome Biology and Evolution, Oxford University Press (OUP), Vol. 14, No. 12 ( 2022-12-07)
    Abstract: The molecular factors and gene regulation involved in sex determination and gonad differentiation in bivalve molluscs are unknown. It has been suggested that doubly uniparental inheritance (DUI) of mitochondria may be involved in these processes in species such as the ubiquitous and commercially relevant Manila clam, Ruditapes philippinarum. We present the first long-read-based de novo genome assembly of a Manila clam, and a RNA-Seq multi-tissue analysis of 15 females and 15 males. The highly contiguous genome assembly was used as reference to investigate gene expression, alternative splicing, sequence evolution, tissue-specific co-expression networks, and sexual contrasting SNPs. Differential expression (DE) and differential splicing (DS) analyses revealed sex-specific transcriptional regulation in gonads, but not in somatic tissues. Co-expression networks revealed complex gene regulation in gonads, and genes in gonad-associated modules showed high tissue specificity. However, male gonad-associated modules showed contrasting patterns of sequence evolution and tissue specificity. One gene set was related to the structural organization of male gametes and presented slow sequence evolution but high pleiotropy, whereas another gene set was enriched in reproduction-related processes and characterized by fast sequence evolution and tissue specificity. Sexual contrasting SNPs were found in genes overrepresented in mitochondrial-related functions, providing new candidates for investigating the relationship between mitochondria and sex in DUI species. Together, these results increase our understanding of the role of DE, DS, and sequence evolution of sex-specific genes in an understudied taxon. We also provide resourceful genomic data for studies regarding sex diagnosis and breeding in bivalves.
    Type of Medium: Online Resource
    ISSN: 1759-6653
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2022
    detail.hit.zdb_id: 2495328-3
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  • 8
    In: Blood, American Society of Hematology, Vol. 140, No. Supplement 1 ( 2022-11-15), p. 1121-1124
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2022
    detail.hit.zdb_id: 1468538-3
    detail.hit.zdb_id: 80069-7
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  • 9
    In: Journal of Clinical Oncology, American Society of Clinical Oncology (ASCO), Vol. 23, No. 30 ( 2005-10-20), p. 7594-7603
    Abstract: The aim of this study was to evaluate the prognostic value of the WHO proposal, to assess the role of the main prognostic factors in myelodysplastic syndromes (MDSs) classified into WHO subgroups, and to estimate mortality (standardized mortality ratio [SMR]) and life expectancy in these groups as a basis for clinical decision making. Patients and Methods Four hundred sixty-seven patients who were diagnosed as having de novo MDS at the Division of Hematology, University of Pavia (Pavia, Italy), between 1992 and 2002, were evaluated retrospectively for clinical and hematologic features at diagnosis, overall survival (OS), and progression to leukemia (leukemia-free survival). Results Significant differences in survival were noted between patients with refractory anemia (RA), refractory cytopenia with multilineage dysplasia, RA with excess blasts, type 1 (RAEB-1), and RAEB-2. The effect of demographic factors on OS was observed in MDS patients without excess blasts (age, P = .001; sex, P = .006), as in the general population. The mortality of RA patients 70 years or older did not differ significantly from that of the general population (SMR, 1.62; P = .06). Cytogenetics was the only International Prognostic Scoring System variable showing a prognostic value in MDS classified into WHO subgroups. Transfusion-dependent patients had a significantly shorter survival than patients who did not require transfusions (P 〈 .001). Developing a secondary iron overload significantly affected the survival of transfusion-dependent patients (P = .003). Conclusion These data show that the WHO classification of MDSs has a relevant prognostic value. This classification, along with cytogenetics, might be useful in decisions regarding transplantation. MDS with isolated erythroid lineage dysplasia identifies a subset of truly low-risk patients, for whom a conservative approach is advisable.
    Type of Medium: Online Resource
    ISSN: 0732-183X , 1527-7755
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    Language: English
    Publisher: American Society of Clinical Oncology (ASCO)
    Publication Date: 2005
    detail.hit.zdb_id: 2005181-5
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  • 10
    In: Blood, American Society of Hematology, Vol. 107, No. 9 ( 2006-05-01), p. 3676-3682
    Abstract: We studied the relationship between granulocyte JAK2 (V617F) mutation status, circulating CD34+ cells, and granulocyte activation in myeloproliferative disorders. Quantitative allele-specific polymerase chain reaction (PCR) showed significant differences between various disorders with respect to either the proportion of positive patients (53%-100%) or that of mutant alleles, which overall ranged from 1% to 100%. In polycythemia vera, JAK2 (V617F) was detected in 23 of 25 subjects at diagnosis and in 16 of 16 patients whose disease had evolved into myelofibrosis; median percentages of mutant alleles in these subgroups were significantly different (32% versus 95%, P 〈 .001). Circulating CD34+ cell counts were variably elevated and associated with disease category and JAK2 (V617F) mutation status. Most patients had granulocyte activation patterns similar to those induced by administration of granulocyte colony-stimulating factor. A JAK2 (V617F) gene dosage effect on both CD34+ cell counts and granulocyte activation was clearly demonstrated in polycythemia vera, where abnormal patterns were mainly found in patients carrying more than 50% mutant alleles. These observations suggest that JAK2 (V617F) may constitutively activate granulocytes and by this means mobilize CD34+ cells. This exemplifies a novel paradigm in which a somatic gain-of-function mutation is initially responsible for clonal expansion of hematopoietic cells and later for their abnormal trafficking via an activated cell progeny.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2006
    detail.hit.zdb_id: 1468538-3
    detail.hit.zdb_id: 80069-7
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