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  • 1
    Online Resource
    Online Resource
    Elsevier BV ; 2008
    In:  Journal of Clinical Epidemiology Vol. 61, No. 3 ( 2008-3), p. 232-240.e2
    In: Journal of Clinical Epidemiology, Elsevier BV, Vol. 61, No. 3 ( 2008-3), p. 232-240.e2
    Type of Medium: Online Resource
    ISSN: 0895-4356
    RVK:
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2008
    detail.hit.zdb_id: 1500490-9
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  • 2
    In: Human Brain Mapping, Wiley, Vol. 29, No. 10 ( 2008-10), p. 1111-1122
    Abstract: This article firstly presents a theoretical analysis of the statistical power of a parallel‐group, repeated‐measures (two‐session) and two‐centre design suitable for a placebo‐controlled pharmacological MRI study. For arbitrary effect size, power is determined by the pooled between‐session error, the pooled measurement error, the ratio of centre measurement errors, the total number of subjects and the proportion of subjects studied at the centre with greatest measurement error. Secondly, an experiment is described to obtain empirical estimates of variance components in task‐related and resting state functional magnetic resonance imaging. Twelve healthy volunteers were scanned at two centres during performance of blocked and event‐related versions of an affect processing task (each repeated twice per session) and rest. In activated regions, variance components were estimated: between‐subject (23% of total), between‐centre (2%), between‐paradigm (4%), within‐session occasion (paradigm repeat; 2%) and residual (measurement) error (69%). The between‐centre ratio of measurement errors was 0.8. A similar analysis for the Hurst exponent estimated in resting data showed negligible contributions of between‐subject and between‐centre variability; measurement error accounted for 99% of total variance. Substituting these estimates in the theoretical expression for power, incorporation of two centres in the design necessitates a modest (10%) increase in the total number of subjects compared with a single‐centre study. Furthermore, considerable improvements in power can be attained by repetition of the task within each scanning session. Thus, theoretical models of power and empirical data indicate that between‐centre variability can be small enough to encourage multicentre designs without major compensatory increases in sample size. Hum Brain Mapp 2008. © 2007 Wiley‐Liss, Inc.
    Type of Medium: Online Resource
    ISSN: 1065-9471 , 1097-0193
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2008
    detail.hit.zdb_id: 1492703-2
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  • 3
    Online Resource
    Online Resource
    Oxford University Press (OUP) ; 2007
    In:  Journal of the Royal Statistical Society Series A: Statistics in Society Vol. 170, No. 4 ( 2007-10-01), p. 865-890
    In: Journal of the Royal Statistical Society Series A: Statistics in Society, Oxford University Press (OUP), Vol. 170, No. 4 ( 2007-10-01), p. 865-890
    Abstract: A wide variety of statistical methods have been proposed for detecting unusual performance in cross-sectional data on health care providers. We attempt to create a unified framework for comparing these methods, focusing on a clear distinction between estimation and hypothesis testing approaches, with the corresponding distinction between detecting ‘extreme’ and ‘divergent’ performance. When assuming a random-effects model the random-effects distribution forms the null hypothesis, and there appears little point in testing whether individual effects are greater or less than average. The hypothesis testing approach uses p-values as summaries and brings with it the standard problems of multiple testing, whether Bayesian or classical inference is adopted. A null random-effects formulation allows us to answer appropriate questions of the type: ‘is a particular provider worse than we would expect the true worst provider (but still part of the null distribution) to be'? We outline a broad three-stage strategy of exploratory detection of unusual providers, detailed modelling robust to potential outliers and confirmation of unusual performance, illustrated by using two detailed examples. The concepts are most easily handled within a Bayesian analytic framework using Markov chain Monte Carlo methods, but the basic ideas should be generally applicable.
    Type of Medium: Online Resource
    ISSN: 0964-1998 , 1467-985X
    RVK:
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2007
    detail.hit.zdb_id: 204794-9
    detail.hit.zdb_id: 1490715-X
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  • 4
    Online Resource
    Online Resource
    Institute of Mathematical Statistics ; 2013
    In:  Statistical Science Vol. 28, No. 3 ( 2013-8-1)
    In: Statistical Science, Institute of Mathematical Statistics, Vol. 28, No. 3 ( 2013-8-1)
    Type of Medium: Online Resource
    ISSN: 0883-4237
    Language: Unknown
    Publisher: Institute of Mathematical Statistics
    Publication Date: 2013
    detail.hit.zdb_id: 2009740-2
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  • 5
    Online Resource
    Online Resource
    Oxford University Press (OUP) ; 2016
    In:  Journal of the Royal Statistical Society Series C: Applied Statistics Vol. 65, No. 3 ( 2016-04-01), p. 465-482
    In: Journal of the Royal Statistical Society Series C: Applied Statistics, Oxford University Press (OUP), Vol. 65, No. 3 ( 2016-04-01), p. 465-482
    Abstract: In phase I clinical trials with cytostatic agents, the typical objective is to identify the optimal biological dose, which should be tolerable as well as achieving the highest effectiveness. Towards this goal, we consider binary toxicity and efficacy end points simultaneously and develop a two-stage Bayesian adaptive design. Stage 1 searches for the maximum tolerated dose by using a beta–binomial model in conjunction with a probit model, for which decision making is based on the model that fits the toxicity data better. Stage 2 identifies the optimal biological dose while still controlling the level of toxicity. We enumerate all the possibilities that each of the admissible doses may deliver the highest effectiveness so that the dose–efficacy curve is allowed to be increasing, decreasing or concave. We conduct simulation studies to examine the ability of the proposed method to pinpoint both the maximum tolerated dose and the optimal biological dose and demonstrate the design’s satisfactory performance with the BKM120 and cetuximab phase I clinical trials.
    Type of Medium: Online Resource
    ISSN: 0035-9254 , 1467-9876
    RVK:
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2016
    detail.hit.zdb_id: 204797-4
    detail.hit.zdb_id: 1482300-7
    detail.hit.zdb_id: 1476894-X
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  • 6
    Online Resource
    Online Resource
    SAGE Publications ; 2011
    In:  Clinical Trials Vol. 8, No. 2 ( 2011-04), p. 129-143
    In: Clinical Trials, SAGE Publications, Vol. 8, No. 2 ( 2011-04), p. 129-143
    Abstract: Background In a pharmaceutical drug development setting, possible interactions between the treatment and particular baseline clinical or demographic factors are often of interest. However, the subgroup analysis required to investigate such associations remains controversial. Concerns with classical hypothesis testing approaches to the problem include low power, multiple testing, and the possibility of data dredging. Purpose As an alternative to hypothesis testing, the use of shrinkage estimation techniques is investigated in the context of an exploratory post hoc subgroup analysis. A range of models that have been suggested in the literature are reviewed. Building on this, we explore a general modeling strategy, considering various options for shrinkage of effect estimates. This is applied to a case-study, in which evidence was available from seven-phase II–III clinical trials examining a novel therapy, and also to two artificial datasets with the same structure. Methods Emphasis is placed on hierarchical modeling techniques, adopted within a Bayesian framework using freely available software. A range of possible subgroup model structures are applied, each incorporating shrinkage estimation techniques. Results The investigation of the case-study showed little evidence of subgroup effects. Because inferences appeared to be consistent across a range of well-supported models, and model diagnostic checks showed no obvious problems, it seemed this conclusion was robust. It is reassuring that the structured shrinkage techniques appeared to work well in a situation where deeper inspection of the data suggested little evidence of subgroup effects. Limitations The post hoc examination of subgroups should be seen as an exploratory analysis, used to help make better informed decisions regarding potential future studies examining specific subgroups. To a certain extent, the degree of understanding provided by such assessments will be limited by the quality and quantity of available data. Conclusions In light of recent interest by health authorities into the use of subgroup analysis in the context of drug development, it appears that Bayesian approaches involving shrinkage techniques could play an important role in this area. Hopefully, the developments outlined here provide useful methodology for tackling such a problem, in-turn leading to better informed decisions regarding subgroups.
    Type of Medium: Online Resource
    ISSN: 1740-7745 , 1740-7753
    Language: English
    Publisher: SAGE Publications
    Publication Date: 2011
    detail.hit.zdb_id: 2159773-X
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  • 7
    Online Resource
    Online Resource
    Wiley ; 2013
    In:  Statistics in Medicine Vol. 32, No. 24 ( 2013-10-30), p. 4180-4195
    In: Statistics in Medicine, Wiley, Vol. 32, No. 24 ( 2013-10-30), p. 4180-4195
    Type of Medium: Online Resource
    ISSN: 0277-6715
    RVK:
    Language: English
    Publisher: Wiley
    Publication Date: 2013
    detail.hit.zdb_id: 1491221-1
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  • 8
    Online Resource
    Online Resource
    Informa UK Limited ; 2017
    In:  Statistics in Biopharmaceutical Research Vol. 9, No. 3 ( 2017-07-03), p. 293-301
    In: Statistics in Biopharmaceutical Research, Informa UK Limited, Vol. 9, No. 3 ( 2017-07-03), p. 293-301
    Type of Medium: Online Resource
    ISSN: 1946-6315
    Language: English
    Publisher: Informa UK Limited
    Publication Date: 2017
    detail.hit.zdb_id: 2480040-5
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  • 9
    In: Science Translational Medicine, American Association for the Advancement of Science (AAAS), Vol. 5, No. 169 ( 2013-01-23)
    Abstract: Metastasis is the major cause of cancer mortality. A more thorough understanding of the mechanisms driving this complex multistep process will aid in the identification and characterization of therapeutically targetable genetic drivers of disease progression. We demonstrate that KLF6-SV1, an oncogenic splice variant of the KLF6 tumor suppressor gene, is associated with increased metastatic potential and poor survival in a cohort of 671 lymph node–negative breast cancer patients. KLF6-SV1 overexpression in mammary epithelial cell lines resulted in an epithelial-to-mesenchymal–like transition and drove aggressive multiorgan metastatic disease in multiple in vivo models. Additionally, KLF6-SV1 loss-of-function studies demonstrated reversion to an epithelial and less invasive phenotype. Combined, these findings implicate KLF6-SV1 as a key driver of breast cancer metastasis that distinguishes between indolent and lethal early-stage disease and provides a potential therapeutic target for invasive breast cancer.
    Type of Medium: Online Resource
    ISSN: 1946-6234 , 1946-6242
    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2013
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  • 10
    In: Pharmaceutical Statistics, Wiley, Vol. 23, No. 4 ( 2024-07), p. 495-510
    Abstract: We present the motivation, experience, and learnings from a data challenge conducted at a large pharmaceutical corporation on the topic of subgroup identification. The data challenge aimed at exploring approaches to subgroup identification for future clinical trials. To mimic a realistic setting, participants had access to 4 Phase III clinical trials to derive a subgroup and predict its treatment effect on a future study not accessible to challenge participants. A total of 30 teams registered for the challenge with around 100 participants, primarily from Biostatistics organization. We outline the motivation for running the challenge, the challenge rules, and logistics. Finally, we present the results of the challenge, the participant feedback as well as the learnings. We also present our view on the implications of the results on exploratory analyses related to treatment effect heterogeneity.
    Type of Medium: Online Resource
    ISSN: 1539-1604 , 1539-1612
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2024
    detail.hit.zdb_id: 2083706-9
    detail.hit.zdb_id: 2163550-X
    SSG: 15,3
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