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  • 1
    In: Genome Medicine, Springer Science and Business Media LLC, Vol. 15, No. 1 ( 2023-04-05)
    Abstract: We previously reported that impaired type I IFN activity, due to inborn errors of TLR3- and TLR7-dependent type I interferon (IFN) immunity or to autoantibodies against type I IFN, account for 15–20% of cases of life-threatening COVID-19 in unvaccinated patients. Therefore, the determinants of life-threatening COVID-19 remain to be identified in ~ 80% of cases. Methods We report here a genome-wide rare variant burden association analysis in 3269 unvaccinated patients with life-threatening COVID-19, and 1373 unvaccinated SARS-CoV-2-infected individuals without pneumonia. Among the 928 patients tested for autoantibodies against type I IFN, a quarter (234) were positive and were excluded. Results No gene reached genome-wide significance. Under a recessive model, the most significant gene with at-risk variants was TLR7 , with an OR of 27.68 (95%CI 1.5–528.7, P  = 1.1 × 10 −4 ) for biochemically loss-of-function (bLOF) variants. We replicated the enrichment in rare predicted LOF (pLOF) variants at 13 influenza susceptibility loci involved in TLR3-dependent type I IFN immunity (OR = 3.70[95%CI 1.3–8.2], P  = 2.1 × 10 −4 ). This enrichment was further strengthened by (1) adding the recently reported TYK2 and TLR7 COVID-19 loci, particularly under a recessive model (OR = 19.65[95%CI 2.1–2635.4], P  = 3.4 × 10 −3 ), and (2) considering as pLOF branchpoint variants with potentially strong impacts on splicing among the 15 loci (OR = 4.40[9%CI 2.3–8.4], P  = 7.7 × 10 −8 ). Finally, the patients with pLOF/bLOF variants at these 15 loci were significantly younger (mean age [SD] = 43.3 [20.3] years) than the other patients (56.0 [17.3] years; P  = 1.68 × 10 −5 ). Conclusions Rare variants of TLR3- and TLR7-dependent type I IFN immunity genes can underlie life-threatening COVID-19, particularly with recessive inheritance, in patients under 60 years old.
    Type of Medium: Online Resource
    ISSN: 1756-994X
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2023
    detail.hit.zdb_id: 2484394-5
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  • 2
    Online Resource
    Online Resource
    Elsevier BV ; 2020
    In:  International Journal for Parasitology Vol. 50, No. 10-11 ( 2020-09), p. 825-837
    In: International Journal for Parasitology, Elsevier BV, Vol. 50, No. 10-11 ( 2020-09), p. 825-837
    Type of Medium: Online Resource
    ISSN: 0020-7519
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2020
    detail.hit.zdb_id: 2011817-X
    SSG: 12
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  • 3
    In: Journal of Experimental Biology, The Company of Biologists
    Abstract: Parasites can account for a substantial proportion of the biomass in marine communities. As such, parasites play a significant ecological role in ecosystem functioning via host interactions. Unlike macropredators, such as large piscivores, micropredators rarely cause direct mortality. Rather, micropredators impose an energetic tax, thus significantly affecting host physiology and behaviour via such sublethal effects. Recent research suggests that infection by gnathiid isopods (Crustacea) causes significant physiological stress and increased mortality rates. However, it is unclear whether infection causes changes in the behaviours that underpin escape responses or changes in routine activity levels. Moreover, it is poorly understood whether the cost of gnathiid infection manifests as an increase in cortisol. To investigate this, we examined the effect of experimental gnathiid infection on the swimming and escape performance of a newly settled coral reef fish and whether infection would lead to increased cortisol levels. We found that micropredation by a single gnathiid caused fast-start escape performance and swimming behaviour to significantly decrease and cortisol levels to double. Fast-start escape performance is an important predictor of recruit survival in the wild. As such, altered fitness related traits and short-term stress, perhaps especially during early life stages, may result in large scale changes in the number of fish that successfully recruit to adult populations.
    Type of Medium: Online Resource
    ISSN: 1477-9145 , 0022-0949
    Language: English
    Publisher: The Company of Biologists
    Publication Date: 2020
    detail.hit.zdb_id: 1482461-9
    SSG: 12
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  • 4
    Online Resource
    Online Resource
    University of Illinois Press ; 2002
    In:  Journal of American Folklore Vol. 115, No. 456 ( 2002-04-01), p. 116-128
    In: Journal of American Folklore, University of Illinois Press, Vol. 115, No. 456 ( 2002-04-01), p. 116-128
    Type of Medium: Online Resource
    ISSN: 0021-8715 , 1535-1882
    RVK:
    Language: English
    Publisher: University of Illinois Press
    Publication Date: 2002
    detail.hit.zdb_id: 2050513-9
    SSG: 7,26
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  • 5
    In: Functional Ecology, Wiley, Vol. 34, No. 7 ( 2020-07), p. 1507-1518
    Abstract: Declining coral cover and loss of structural complexity are widely reported on today's coral reefs. While coral loss frequently triggers changes in coral reef fish assemblage structure, the ecosystem‐scale consequences of these changes are poorly known. Here we evaluate how four metrics of energy flow and storage that underscore a critical coral reef function, consumer biomass production, respond to severe coral loss on a coral reef in the northern Great Barrier Reef, Australia. We compared fish and benthic surveys at Lizard Island from 2003 to 2004 with surveys in 2018 using an individual‐level modelling approach that integrates growth and mortality coefficients to estimate community‐level standing biomass, productivity, consumed biomass and turnover. In the study period, coral cover declined by 72%–83% in forereef zones while turf cover increased by 18%–100% across all zones. Reef fish assemblages, in turn, responded with a 71% increase in standing biomass, 41% in productivity and 37% in consumed biomass, mainly driven by nominally‐herbivorous fishes (Labridae—Scarini, Acanthuridae and Siganidae). By contrast, biomass turnover rates declined by 19%. Our findings suggest that coral loss can drive energetic shifts on coral reefs, leading to more productive, but slower paced reef fish assemblages. Although the observed build‐up of biomass may appear positive, the decreased turnover rates indicate that the system is unable to maintain biomass replacement levels. This suggests that the enhanced productivity that accompanied coral loss may be driven by storage effects from the somatic growth of individuals already present, questioning the temporal stability of these changes to coral reef ecosystem functioning. A free Plain Language Summary can be found within the Supporting Information of this article.
    Type of Medium: Online Resource
    ISSN: 0269-8463 , 1365-2435
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2020
    detail.hit.zdb_id: 2020307-X
    detail.hit.zdb_id: 619313-4
    SSG: 12
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  • 6
    Online Resource
    Online Resource
    Springer Science and Business Media LLC ; 2021
    In:  Coral Reefs Vol. 40, No. 2 ( 2021-04), p. 535-542
    In: Coral Reefs, Springer Science and Business Media LLC, Vol. 40, No. 2 ( 2021-04), p. 535-542
    Type of Medium: Online Resource
    ISSN: 0722-4028 , 1432-0975
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2021
    detail.hit.zdb_id: 9047-5
    detail.hit.zdb_id: 1472576-9
    SSG: 12
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  • 7
    Online Resource
    Online Resource
    Frontiers Media SA ; 2023
    In:  Frontiers in Ecology and Evolution Vol. 11 ( 2023-4-28)
    In: Frontiers in Ecology and Evolution, Frontiers Media SA, Vol. 11 ( 2023-4-28)
    Abstract: In marine interspecific cleaning mutualisms, small fish known as “cleaners” inspect the surface, gills and sometimes the mouth of “client” reef fish, eating ectoparasites, mucus, scales and dead or infected tissue. These cleaner fish species share similar vivid coloration that makes them recognizable by clients. To gain insight on additional communication roles of cleaner fish color, we tested if differences in color among cleaner wrasse Labroides dimidiatus individuals captured from the wild are explained by sex, body size or parasite loads. We found that males were larger, heavier and tended to have more saturated blue tails than females. We also found blue color saturation to be positively correlated with size, and that this size-dependence explains the trend for the sexes to differ in color. Parasite loads did not predict individual differences in color, but fish in our sample were not heavily parasitized. Other color traits (including yellow color saturation and black color brightness) did not differ between the sexes and were associated with morphological differences. Size-dependence of blue color may thus suggest that it is a condition-dependent signal that could be used in various types of inter- and intraspecific social interactions.
    Type of Medium: Online Resource
    ISSN: 2296-701X
    Language: Unknown
    Publisher: Frontiers Media SA
    Publication Date: 2023
    detail.hit.zdb_id: 2745634-1
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  • 8
    In: Journal of Biogeography, Wiley, Vol. 48, No. 10 ( 2021-10), p. 2469-2485
    Abstract: Several drivers explain the global distribution of all reef fish. However, whether these drivers also explain the distribution and traits of a functional subgroup involving cleaner fishes remain unclear. Here we examine the variation in traits of cleaner fishes and test whether historical, environmental, ecological and geographical drivers are correlated with cleaner species richness and abundance at global reefs. Location Tropical and subtropical reefs. Taxon Actinopterygii. Methods We tested whether species traits and trait space vary between facultative ( i . e . species that clean only during the juvenile stages or sporadically) and dedicated ( i . e . species that clean during their whole lives) cleaner types. We compiled data from local checklists (relative richness) and belt transects (standardized richness and abundance). We built four models to test whether past and current isolation ( i . e . distance from Quaternary refugia and biodiversity centres), sea temperature, primary productivity, local species pool and abundance of potential clients influenced the relative richness and abundance of cleaners. Results Facultative cleaners had high trait variability that contributed disproportionally to the trait space, whereas dedicated cleaners exhibited low trait variability. Cleaner species richness was higher in the Indo‐Pacific and Caribbean provinces, but the relative richness and standardized abundance of cleaners were higher in the Atlantic ( i . e . North Eastern and Southwestern) and Eastern Pacific. Isolation influenced the relative richness of facultative cleaners, whereas the distance to Quaternary refugia, sea temperature and isolation influenced the relative richness of dedicated cleaners. Local species richness and standardized abundance of cleaner fish exhibited a strong relationship with regional diversity. The standardized abundance of both facultative and dedicated cleaners was influenced by the abundance of potential clients and the local species pool. Main conclusions The small trait space occupied by cleaner fishes may reflect their restricted origin among lineages of reef fishes. Differences in the relative richness and standardized abundance of cleaner fishes across marine realms suggest a strong influence on biogeographical history. Our results also indicate that cleaner fishes originated mostly in peripheral areas in high latitudes due to the absence of dedicated cleaners. Our results imply that cleaner fishes do not follow the pattern of main centres of origin described for reef fishes due to opportunistic cleaning behaviour that originated with higher frequency at locations with low species richness.
    Type of Medium: Online Resource
    ISSN: 0305-0270 , 1365-2699
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2021
    detail.hit.zdb_id: 2020428-0
    detail.hit.zdb_id: 188963-1
    SSG: 12
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  • 9
    Online Resource
    Online Resource
    Springer Science and Business Media LLC ; 2021
    In:  Marine Biology Vol. 168, No. 5 ( 2021-05)
    In: Marine Biology, Springer Science and Business Media LLC, Vol. 168, No. 5 ( 2021-05)
    Type of Medium: Online Resource
    ISSN: 0025-3162 , 1432-1793
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2021
    detail.hit.zdb_id: 1117-4
    detail.hit.zdb_id: 1459413-4
    SSG: 12
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  • 10
    Online Resource
    Online Resource
    Japanese Coral Reef Society ; 2020
    In:  Galaxea, Journal of Coral Reef Studies Vol. 22, No. 1 ( 2020), p. 31-36
    In: Galaxea, Journal of Coral Reef Studies, Japanese Coral Reef Society, Vol. 22, No. 1 ( 2020), p. 31-36
    Type of Medium: Online Resource
    ISSN: 1883-0838 , 1883-3969
    Language: English
    Publisher: Japanese Coral Reef Society
    Publication Date: 2020
    detail.hit.zdb_id: 2545030-X
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