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  • 1
    In: British Journal of Haematology, Wiley, Vol. 121, No. 3 ( 2003-05), p. 419-427
    Materialart: Online-Ressource
    ISSN: 0007-1048
    RVK:
    Sprache: Englisch
    Verlag: Wiley
    Publikationsdatum: 2003
    ZDB Id: 1475751-5
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 2
    In: Blood, American Society of Hematology, Vol. 99, No. 6 ( 2002-03-15), p. 2274-2275
    Materialart: Online-Ressource
    ISSN: 1528-0020 , 0006-4971
    RVK:
    RVK:
    Sprache: Englisch
    Verlag: American Society of Hematology
    Publikationsdatum: 2002
    ZDB Id: 1468538-3
    ZDB Id: 80069-7
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 3
    In: European Journal of Haematology, Wiley, Vol. 98, No. 6 ( 2017-06), p. 635-637
    Kurzfassung: Inherited chromosomally integrated human herpesvirus‐6 (ci HHV ‐6) is characterised by the complete HHV ‐6 genome integration into the host germ line genome and is vertically transmitted with a Mendelian inheritance. By now, the only relationship between ci HHV ‐6 and diseases seems to be with angina pectoris. Methods We report a case of an 82‐year‐old man diagnosed with diffuse large B‐cell lymphoma ( DLBCL ) on October 2014. To substantiate the suspicion of ci HHV ‐6, we analysed peripheral blood mononuclear cells, bone marrow biopsy and pleural effusion‐derived mesothelial cells with PCR , RT ‐ PCR and FISH . Results Virological routine screening by PCR showed the absence of HHV ‐8 and EBV infections, while the presence of HHV ‐6 DNA (ie, U22, U42 and U94 HHV ‐6 genes), with a viral load of about 1.0 genome per cell, strongly suggests ci HHV ‐6. The RT ‐ PCR showed the positivity only for the immediate‐early U94, at low levels of transcription (100±15 transcripts/1 μg RNA ). FISH analysis reported a case of inherited ci HHV ‐6 in 17p chromosome region and, for the first time, in a marker chromosome. Conclusions This is the first case of inherited ci HHV ‐6 in a marker chromosome, possibly elucidating the role of this abnormality in the biology of DLBCL .
    Materialart: Online-Ressource
    ISSN: 0902-4441 , 1600-0609
    URL: Issue
    Sprache: Englisch
    Verlag: Wiley
    Publikationsdatum: 2017
    ZDB Id: 2027114-1
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 4
    Online-Ressource
    Online-Ressource
    SAGE Publications ; 2012
    In:  Cancer Informatics Vol. 11 ( 2012-01), p. CIN.S9258-
    In: Cancer Informatics, SAGE Publications, Vol. 11 ( 2012-01), p. CIN.S9258-
    Kurzfassung: Philadelphia positive malignant disorders are a clinically divergent group of leukemias. These include chronic myeloid leukemia (CML) and de novo acute Philadelphia positive (Ph(+)) leukemia of both myeloid, and lymphoid origin. Recent whole genome screening of Ph(+)ALL in both children and adults identified an almost obligatory cryptic loss of Ikaros, required for the normal B cell maturation. Although similar losses were found in lymphoid blast crisis the genetic background of the transformation in CML is still poorly defined. We used Significance Analysis of Microarrays (SAM) to analyze comparative genomic hybridization (aCGH) data from 30 CML (10 each of chronic phase, myeloid and lymphoid blast stage), 10 Ph(+)ALL adult patients and 10 disease free controls and were able to: (a) discriminate between the genomes of lymphoid and myeloid blast cells and (b) identify differences in the genome profile of de novo Ph(+)ALL and lymphoid blast transformation of CML (BC/L). Furthermore we were able to distinguish a sub group of Ph(+) ALL characterized by gains in chromosome 9 and recurrent losses at several other genome sites offering genetic evidence for the clinical heterogeneity. The significance of these results is that they not only offer clues regarding the pathogenesis of Ph(+) disorders and highlight the potential clinical implications of a set of probes but also demonstrates what SAM can offer for the analysis of genome data.
    Materialart: Online-Ressource
    ISSN: 1176-9351 , 1176-9351
    Sprache: Englisch
    Verlag: SAGE Publications
    Publikationsdatum: 2012
    ZDB Id: 2202739-7
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 5
    Online-Ressource
    Online-Ressource
    American Society of Hematology ; 2020
    In:  Blood Vol. 136, No. Supplement 1 ( 2020-11-5), p. 14-14
    In: Blood, American Society of Hematology, Vol. 136, No. Supplement 1 ( 2020-11-5), p. 14-14
    Kurzfassung: Background: Myelofibrosis (MF) is typically characterized by one of three classic driver mutations identified in the JAK2, CALR, and MPL genes. However, a small proportion of MF patients are triple negative and do not carry any of these driver mutations. In the latest WHO 2016 classification of myeloid neoplasms, the authors recommended further genetic testing in this subset of patients to confirm clonality 1. In MF, mutations in ASXL1, EZH2, IDH1, IDH2, SRSF2, U2AF predicted shorter survival and increased risk of leukemic transformation 2,3,4. The presence of one or more of these mutations defined a higher risk category termed high molecular risk (HMR) 4. In transplant eligible patients with HMR, early transplantation should be considered. The hematological malignancy diagnostic service (HMDS) at University College London Hospital (UCLH) serves 8 secondary or tertiary hospitals in North London. At our HMDS, transplant eligible patients with suspected MF are offered the TruSight Myeloid NGS (Illumina) with a panel of 54 genes. The panel is run on the MiSeq Illumina platform. All results are integrated by the oncogenomics multidisciplinary team (MDT). Aim: We evaluated the diagnostic, prognostic, and therapeutic utilization of 54 gene panel myeloid NGS in management of MF patients. Method: Eligible patients were those: (1) Aged & gt;18 years at diagnosis of MF, with a diagnostic date between 1/1/2017 and 12/31/2019. (2) Availability of diagnostic bone marrow samples at HMDS at UCLH. Data was retrospectively collected from patients' medical records. Gene variance screening was performed as described before 5. Results: 67 patients were referred to HMDS at UCLH with suspected myelofibrosis between 1/1/2017 and 12/31/2019. 36 patients were included in this retrospective audit (94% [n= 34/36] with primary MF (PMF) and 6% [n=2/36] with secondary MF). The median age at MF diagnosis was 69 years (range 48-90 years). 55.5% patients (n=20/36) had JAK2 mutation, 13.8% (n=5/36) had CALR mutation, 5.5% (n=2/36) had MPL mutation, 27.3% (n=9/36) were negative for JAK2, CALR and MPL mutation (triple negative) by polymerase chain reaction (PCR). 24/36 patients had myeloid NGS. This includes 15/17 (88%) transplant eligible patients and 9/19 (47%) transplant ineligible patients. 12% patients (n=3/24) had no pathogenic mutations, 42% (n=10/24) had 1 pathogenic mutation, 21% (n=5/24) had 2 pathogenic mutations, 21% (n=5/24) had 3 pathogenic mutations, and 4% (n=1/24) had 4 mutations (Figure 1). The most commonly identified pathogenic mutation by NGS was JAK2 (42%), followed by ASXL1 (21%), SRSF2 (17%), TET2 (13%), CALR (13%). Other less frequent mutations were identified in U2AF1 (8%), SETBP1 (8%), MPL (4%), TP53 (4%), SF3B1 (4%), NRAS (4%), PHF6(4%), CUX1(4%), RUNX1 (4%), BCOR (4%) (Figure 2). 57% (n=4/7) triple negative patients showed evidence of clonal hematopoiesis by NGS. Compared with our standard PCR, NGS showed 88% concordance in identifying JAK2, MPL and CALR mutations. 12% mutations identified by PCR were not identified by NGS. No cryptic mutations were identified. 29% patients (n=7/24) had high molecular risk, of whom 4 were transplant eligible with a DIPSS-plus score of intermediate-2 or above. All of the 4 patients were referred for early Hematopoietic Stem Cell Transplant (HSCT). Despite early HSCT, 2 patients showed early relapse and disease progression of MF. Conclusion: Myeloid NGS showed clinical utility in diagnosis of MF through verifying clonal hematopoiesis in triple negative patients and refining clinical decisions relating to HSCT. References: 1.Arber DA, et al. The 2016 revision to the World Health Organization classification of myeloid neoplasms and acute leukemia. Blood 2016; 127:2391-2405 2.Vannucchi AM, et al. Mutations and prognosis in primary myelofibrosis. Leukemia 2013; 27:1861-1869 3.Guglielmelli P, et al. The number of prognostically detrimental mutations and prognosis in primary myelofibrosis: an international study of 797 patients. Leukemia 2014; 28:1804-1810 4.Tefferi A, et al: MIPSS70+ Version 2.0: Mutation and Karyotype-Enhanced International Prognostic Scoring System for Primary Myelofibrosis. JCO 2018; 36 :1769-1770 5.Nacheva E, et al. Absence of damaging effects of stem cell donation in unrelated donors assessed by FISH and gene variance screening. Bone Marrow Transplantation 2020; 55:1290-1296 Disclosures No relevant conflicts of interest to declare.
    Materialart: Online-Ressource
    ISSN: 0006-4971 , 1528-0020
    RVK:
    RVK:
    Sprache: Englisch
    Verlag: American Society of Hematology
    Publikationsdatum: 2020
    ZDB Id: 1468538-3
    ZDB Id: 80069-7
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 6
    In: BMC Genomics, Springer Science and Business Media LLC, Vol. 11, No. 1 ( 2010), p. 41-
    Materialart: Online-Ressource
    ISSN: 1471-2164
    Sprache: Englisch
    Verlag: Springer Science and Business Media LLC
    Publikationsdatum: 2010
    ZDB Id: 2041499-7
    SSG: 12
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 7
    Online-Ressource
    Online-Ressource
    American Society of Hematology ; 2009
    In:  Blood Vol. 114, No. 22 ( 2009-11-20), p. 3254-3254
    In: Blood, American Society of Hematology, Vol. 114, No. 22 ( 2009-11-20), p. 3254-3254
    Kurzfassung: Abstract 3254 Poster Board III-1 Chronic myeloid leukaemia (CML) is characterized by the expression of the BCR/ABL1 fusion gene, a constitutively activated tyrosine kinase that commonly results from the formation of the Philadelphia chromosome (Ph) after a t(9;22)(q34;q11) or variant rearrangement. Some 10% to 15% of CML patients present with cryptic deletions adjacent to the translocation breakpoint junction on the derivative chromosome 9. These deletions are believed to occur during the formation of the Ph translocation and are associated with a worse prognosis for CML patients treated with hydroxyurea or interferon. However there is still conflicting data regarding the significance of these deletions in patients receiving imatinib therapy, which appears to overcome the poor prognosis associated with the genome loss. Here we present data of three BCR/ABL1 positive CML patients on tyrosine kinase inhibitors (TKI) who developed therapy resistance. In all patients loss of the ABL1 sequences was identified. Surprisingly, these deletions affected not the ABL1 sequences of the ABL1/BCR fusion on the der(9) chromosome but the normal ABL1 allele on the non- translocated homologue of chromosome 9. This loss was not present at the time of diagnosis but was a new event developed during disease progression and found along with other additional chromosome rearrangements in the BCR/ABL1 positive cells. Bone marrow chromosome suspensions were studied by array comparative genomic hybridization (aCGH) analysis and/or fluorescent in situ hybridization (FISH) using and a range of commercial and bacterial artificial chromosomes (BAC) probes. While one patient carried a large deletion del(9)(q31q34) that spanned several megabases and was detectable by G-banding analysis, the other two patients had small cryptic losses (from 1.8 Mbp to 2.6 Mbp). The loss involved 3' ABL1 sequences in one patient whereas it affected the whole gene in the other two cases. Since the negative control exercised by the normal ABL1 allele over the BCR/ABL1 expression has been documented, the sensitivity to the TKI might be affected in the BCR/ABL1 positive cell clone bearing the genome loss. In summary, we report a new type of ABL1 loss in Ph positive cells - deletions at the 9q34 associated with TKI resistance in CML patients. Disclosures: No relevant conflicts of interest to declare.
    Materialart: Online-Ressource
    ISSN: 0006-4971 , 1528-0020
    RVK:
    RVK:
    Sprache: Englisch
    Verlag: American Society of Hematology
    Publikationsdatum: 2009
    ZDB Id: 1468538-3
    ZDB Id: 80069-7
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 8
    Online-Ressource
    Online-Ressource
    American Society of Hematology ; 2010
    In:  Blood Vol. 116, No. 21 ( 2010-11-19), p. 4464-4464
    In: Blood, American Society of Hematology, Vol. 116, No. 21 ( 2010-11-19), p. 4464-4464
    Kurzfassung: Abstract 4464 Philadelphia positive malignant disorders are a clinically divergent group of hemoblastoses with a unique identifying feature, the BCR/ABL1 fusion gene, usually resulting from the chromosome rearrangement t(9;22)(q34;q11) or its variants, that leads to constitutive expression of an aberrant tyrosine kinase. These include chronic myeloid leukaemia (CML) and de novo acute leukaemia of both myeloid Ph(+)AML and lymphoid origin Ph(+)ALL. The latter two disorders are clinically aggressive and therapy challenging even in the era of the powerful tyrosine kinase inhibitors. CML is a multistage progressive disease, which if untreated, inevitably ends as fatal acute leukaemia, either myeloid or lymphoid. The latter is often thought to be indistinguishable from Ph(+)ALL, the most common type of ALL in adults. We have identified DNA sequences the imbalances of which appear to be significantly associated with the disease stage and lineage origin in CML and Ph(+)ALL samples. We used array CGH at a resolution of ~2kb to explore hot spot regions obtained from 102 patient samples comprising 92 CML and controls together with 10 Ph(+)ALL and show how Significance Analysis of Microarrays (1) can be used to identify differences in the genome profile of de novo Ph(+)ALL and lymphoid blast transformation of CML. We show that lymphoid blast crisis CML differs significantly from Ph(+)ALL not only due to the presence of 9p deletions but also due to genomic gains in other chromosomes. Furthermore we identify a sub group of Ph(+)ALL with a distinctive genomic profile. Having identified genome regions of potential interest, ranked in order of significance, out of the 100's of thousands of array results, it is then a challenge to design further experiments to evaluate their contribution to the biology of the BCR/ABL positive disease. 1 Tusher V, Tibshirani R, Chu G: Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci U S A 98:5116-5121 (2001). Disclosures: No relevant conflicts of interest to declare.
    Materialart: Online-Ressource
    ISSN: 0006-4971 , 1528-0020
    RVK:
    RVK:
    Sprache: Englisch
    Verlag: American Society of Hematology
    Publikationsdatum: 2010
    ZDB Id: 1468538-3
    ZDB Id: 80069-7
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 9
    Online-Ressource
    Online-Ressource
    American Society of Hematology ; 2010
    In:  Blood Vol. 116, No. 21 ( 2010-11-19), p. 3405-3405
    In: Blood, American Society of Hematology, Vol. 116, No. 21 ( 2010-11-19), p. 3405-3405
    Kurzfassung: Abstract 3405 Background: BCR-ABL1 encoding for oncogenic tyrosine kinase results from t(9;22)(q34;q11) reciprocal translocation or variants generating the Philadelphia chromosome (Ph), which initiates chronic myeloid leukemia in chronic phase (CML-CP). The second (wild-type) ABL1 and BCR alleles in CML-CP cells remain intact on the non-rearranged homologues of chromosome 9 and 22, respectively. Accordingly, CML-CP cells at early stages express both forms of the ABL1 kinase, oncogenic BCR-ABL1 and normal ABL1. ABL1 tyrosine kinase inhibitors (TKIs) such as imatinib, dasatinib and nilotinib revolutionized the treatment of CML-CP, but they do not eradicate leukemia. Patients who do achieve complete cytogenetic remission (CCyR) may eventually stop responding and acquire resistance to TKIs, which may lead to disease relapse and malignant progression. Mutations in the sequence encoding BCR-ABL1 kinase have been detected in approximately 50% of CML-CP patients resistant to TKIs, but other factors contributing to this phenomenon are poorly characterized. Results: Here, we identified a novel mechanism of TKI resistance: loss of the remaining normal ABL1 allele resulting from cryptic deletion in the 9q34 region in the normal chromosome 9 [del(9)(q34)]. Using bacterial artificial chromosome probes (BACs) for dual color/dual probe fluorescent in situ hybridization (D-FISH), and oligonucleotide array comparative genomic hybridization (aCGH) we show that genomic deletion of ABL1 allele in non-translocated chromosome 9 acquired during TKI therapy in CML-CP patients was associated with resistance to imatinib and dasatinib. del(9)(q34) was detected in approximately 10% of the patients who initially failed to achieve CCyR within 12 months of TKI treatment. Moreover, BCR-ABL1-positive Abl1-/- murine leukemia cells were refractory to imatinib in comparison to BCR-ABL1–positive Abl1+/+ counterparts as indicated by persistent BCR-ABL1 –mediated tyrosine phosphorylation, lack of BCR-ABL1 protein degradation, increased cell survival and clonogenic activity. Expression of exogenous ABL1 kinase in BCR-ABL1–positive Abl1-/- cells restored their sensitivity to imatinib. These results provide direct evidence that Abl1 plays a crucial role in regulation of the sensitivity of BCR-ABL1-positive leukemia cells to imatinib. ABL1 is regarded as a cell cycle regulatory and pro-apoptotic protein, thus antagonistic to BCR-ABL1. The cell cycle inhibitory activity is independent of ABL1 kinase, whereas the pro-apoptotic function is dependent on its kinase activity. However, acquired resistance to TKIs caused by a loss of the wild-type ABL1 kinase does not appear to depend directly on the lack of ABL1-induced cell cycle arrest and/or apoptosis. In contrast to BCR-ABL1 –positive Abl1+/+ leukemia cells, imatinib exerted only modest effect on BCR-ABL1 kinase-dependent tyrosine phosphorylation and did not downregulate BCR-ABL1 protein in Abl1-/- leukemia cells, suggesting the role of Abl1 in cellular uptake of the drug and/or BCR-ABL1 degradation. Expression of imatinib cellular importer Oct-1 and cellular exporters Abcb1 and Abcg2 does not appear to favor the resistance to TKI in BCR-ABL1-positive Abl1-/- cells, but the impact of ABL1 on intracellular metabolism of imatinib cannot be excluded. In addition, expression of chaperone protein Hsp90, which protects BCR-ABL1 from proteasomal degradation, is not affected by Abl1. However, 〉 3-fold downregulation of cathepsin B may be responsible for lack of degradation of BCR-ABL1 protein in imatinib-treated Abl1-/- cells. Conclusions: Altogether, it can be postulated that loss of expression of ABL1 kinase plays an important role in TKI resistance in CML. It can be achieved by interstitial deletion in chromosome 9 [del(9)(q34)] causing loss of normal ABL1 allele, which could be eventually combined with epigenetic silencing of the alternative ABL1 promoter retained in the CpG island of the BCR-ABL1 gene in t(9;22)(q34:q11). Detection of the del(9)(q34) is beyond the resolution of conventional karyotyping currently used to monitor TKI treatment response. In contrast, D-FISH using commercially available probes can identify such loss in both quiescent and dividing cells. In summary, downregulation of ABL1 caused by del(9)(q34) may serve as an important prognostic factor and have a significant impact on CML treatment. Disclosures: No relevant conflicts of interest to declare.
    Materialart: Online-Ressource
    ISSN: 0006-4971 , 1528-0020
    RVK:
    RVK:
    Sprache: Englisch
    Verlag: American Society of Hematology
    Publikationsdatum: 2010
    ZDB Id: 1468538-3
    ZDB Id: 80069-7
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 10
    In: Journal of Clinical Microbiology, American Society for Microbiology, Vol. 44, No. 4 ( 2006-04), p. 1571-1574
    Kurzfassung: Six immunocompetent patients with human herpesvirus 6 (HHV-6) chromosomal integration had HHV-6 and β-globin DNA quantified in various samples by PCR. The mean HHV-6 DNA concentration (log 10 copies/milliliter) in blood was 7.0 (≥1 HHV-6 DNA copies/leukocyte), and in serum it was 5.3 (≥1 HHV-6 DNA copies/lysed cell). The mean HHV-6 DNA load (log 10 copies)/hair follicle was 4.2 (≥1 copies/hair follicle cell), demonstrating that viral integration is not confined to blood cells. The characteristically high HHV-6 DNA levels in chromosomal integration may confound laboratory diagnosis of HHV-6 infection and should be given due consideration.
    Materialart: Online-Ressource
    ISSN: 0095-1137 , 1098-660X
    RVK:
    Sprache: Englisch
    Verlag: American Society for Microbiology
    Publikationsdatum: 2006
    ZDB Id: 1498353-9
    SSG: 12
    Standort Signatur Einschränkungen Verfügbarkeit
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