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  • 1
    In: Journal of Physics: Conference Series, IOP Publishing, Vol. 2380, No. 1 ( 2022-12-01), p. 012003-
    Abstract: UVSOR is a Japanese low-energy synchrotron light source that has been operational since 1983. It has 750 MeV electron beam energy and a circumference of 53 m. The machine has undergone two major upgrades and is now called UVSOR-III, with a moderately small emittance of 17 nm·rad and is operated in the top-up mode at 300 mA. It has six undulators. Three in-vacuum undulators provide high-brightness VUV-SX light to the beamlines BL3U, BL4U, and BL6U. BL3U and BL4U are actively used for chemistry and life sciences using in situ and operando measurements, such as soft X-ray absorption and photoelectron spectroscopy. Since 2020, a unique photoelectron analyzer called the Momentum Microscope has been in operation in BL6U. Two variable polarization undulators provide high-brightness VUV light to the beamlines, BL5U and BL7U, which are used for solid-state physics through angle- and spin-resolved photoelectron spectroscopy. BL1U is equipped with two APPLE-II undulators in tandem and is used for various research purposes, including laser Compton scattering gamma rays. In addition to these beamlines, eight beamlines are operational which use bending magnet radiation, ranging from THz to tender X-rays. In 38 years of operation, we have dealt with and properly resolved machine problems, such as water leakage from magnet coils and cooling water flow paths in ultrahigh vacuum. Considering the machine’s declining competitiveness as a light source due to its aging and emerging demands in the low-energy area, we have started a design study on the future plan, as well as discussing it closely with the user community.
    Type of Medium: Online Resource
    ISSN: 1742-6588 , 1742-6596
    Language: Unknown
    Publisher: IOP Publishing
    Publication Date: 2022
    detail.hit.zdb_id: 2166409-2
    Location Call Number Limitation Availability
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  • 2
    In: Development, Growth & Differentiation, Wiley, Vol. 62, No. 6 ( 2020-08), p. 450-461
    Abstract: The larvacean Oikopleura dioica is a planktonic chordate and is a tunicate that belongs to the closest relatives to vertebrates. Its simple and transparent body, invariant embryonic cell lineages, and short life cycle of 5 days make it a promising model organism for the study of developmental biology. The genome browser OikoBase was established in 2013 using Norwegian O. dioica . However, genome information for other populations is not available, even though many researchers have studied local populations. In the present study, we sequenced using Illumina and PacBio RSII technologies the genome of O. dioica from a southwestern Japanese population that was cultured in our laboratory for 3 years. The genome of Japanese O. dioica was assembled into 576 scaffold sequences with a total length and N50 length of 56.6 and 1.5 Mb, respectively. A total of 18,743 gene models (transcript models) were predicted in the genome assembly, named OSKA2016. In addition, 19,277 non‐redundant transcripts were assembled using RNA‐seq data. The OSKA2016 has global sequence similarity of only 86.5% when compared with the OikoBase, highlighting the sequence difference between the two far distant O. dioica populations on the globe. The genome assembly, transcript assembly, and transcript models were incorporated into ANISEED ( https://www.aniseed.cnrs.fr/ ) for genome browsing and BLAST searches. Mapping of reads obtained from male‐ or female‐specific genome libraries yielded male‐specific scaffolds in the OSKA2016 and revealed that over 2.6 Mb of sequence were included in the male‐specific Y‐region. The genome and transcriptome resources from two distinct populations will be useful datasets for developmental biology, evolutionary biology, and molecular ecology using this model organism.
    Type of Medium: Online Resource
    ISSN: 0012-1592 , 1440-169X
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2020
    detail.hit.zdb_id: 2020067-5
    SSG: 12
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