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  • 1
    In: Weed Science, Cambridge University Press (CUP), Vol. 55, No. 3 ( 2007-05), p. 193-203
    Type of Medium: Online Resource
    ISSN: 0043-1745 , 1550-2759
    Language: English
    Publisher: Cambridge University Press (CUP)
    Publication Date: 2007
    detail.hit.zdb_id: 2123881-9
    SSG: 12
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  • 2
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 357, No. 6346 ( 2017-07-07), p. 93-97
    Abstract: Wheat ( Triticum spp.) is one of the founder crops that likely drove the Neolithic transition to sedentary agrarian societies in the Fertile Crescent more than 10,000 years ago. Identifying genetic modifications underlying wheat’s domestication requires knowledge about the genome of its allo-tetraploid progenitor, wild emmer ( T. turgidum ssp. dicoccoides ). We report a 10.1-gigabase assembly of the 14 chromosomes of wild tetraploid wheat, as well as analyses of gene content, genome architecture, and genetic diversity. With this fully assembled polyploid wheat genome, we identified the causal mutations in Brittle Rachis 1 ( TtBtr1 ) genes controlling shattering, a key domestication trait. A study of genomic diversity among wild and domesticated accessions revealed genomic regions bearing the signature of selection under domestication. This reference assembly will serve as a resource for accelerating the genome-assisted improvement of modern wheat varieties.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
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    RVK:
    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2017
    detail.hit.zdb_id: 128410-1
    detail.hit.zdb_id: 2066996-3
    detail.hit.zdb_id: 2060783-0
    SSG: 11
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  • 3
    In: Environmental Microbiology, Wiley, Vol. 16, No. 6 ( 2014-06), p. 1695-1708
    Abstract: A low‐diversity microbial community, dominated by the γ ‐proteobacterium H alomonas sulfidaeris , was detected in samples of warm saline formation porewater collected from the C ambrian Mt. S imon S andstone in the I llinois B asin of the N orth A merican M idcontinent (1.8 km/5872 ft burial depth, 50° C , pH  8, 181 bars pressure). These highly porous and permeable quartz arenite sandstones are directly analogous to reservoirs around the world targeted for large‐scale hydrocarbon extraction, as well as subsurface gas and carbon storage. A new downhole low‐contamination subsurface sampling probe was used to collect in situ formation water samples for microbial environmental metagenomic analyses. Multiple lines of evidence suggest that this H .  sulfidaeris ‐dominated subsurface microbial community is indigenous and not derived from drilling mud microbial contamination. Data to support this includes V 1‐ V 3 pyrosequencing of formation water and drilling mud, as well as comparison with previously published microbial analyses of drilling muds in other sites. Metabolic pathway reconstruction, constrained by the geology, geochemistry and present‐day environmental conditions of the Mt . S imon S andstone, implies that H .  sulfidaeris ‐dominated subsurface microbial community may utilize iron and nitrogen metabolisms and extensively recycle indigenous nutrients and substrates. The presence of aromatic compound metabolic pathways suggests this microbial community can readily adapt to and survive subsurface hydrocarbon migration.
    Type of Medium: Online Resource
    ISSN: 1462-2912 , 1462-2920
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2014
    detail.hit.zdb_id: 2020213-1
    SSG: 12
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  • 4
    In: Journal of Neuro-Oncology, Springer Science and Business Media LLC, Vol. 103, No. 2 ( 2011-6), p. 247-253
    Type of Medium: Online Resource
    ISSN: 0167-594X , 1573-7373
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2011
    detail.hit.zdb_id: 2007293-4
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  • 5
    Online Resource
    Online Resource
    Wiley ; 2010
    In:  Crop Science Vol. 50, No. 4 ( 2010-07), p. 1141-1150
    In: Crop Science, Wiley, Vol. 50, No. 4 ( 2010-07), p. 1141-1150
    Abstract: A century of corn ( Zea mays L.) breeding at Agronomy & Plant Genetics, University of Minnesota, developed Minnesota 13 cultivar (Minn13) that enlarged the U.S. Corn Belt and also developed 273 corn inbreds. Minn13 was widely grown in 15 northern and higher elevation states for 40 yr before hybrid corn. Minnesota inbreds were used in 30.6% of the seed for the 1975 U.S. corn crop: Minnesota A632 15.2%, A634 7.8%, A619 4.2%, W117 (1/2 Minn13) 1.8%, A635 0.9%, A554 0.6%, and A654 0.1%. Our main objective is to measure the contribution of Minnesota corn breeding to today's corn. We define today's corn as the 305 proprietary corn inbred lines registered by U.S. Plant Variety Protection or utility patent 2004 to 2008. Minnesota developed corn inbreds contributing most to today's corn are C49 (A9), A509, A556, B164, and A237. These corn inbreds were sources of earliness that formed the Pioneer Early Iodents (PEI) at Mankato, MN in the early 1960s. They average 1.1% of the genes and 137 (45%) of the descendents among today's corn. The Minn13 inbred line descendents contributing most to today's corn are DeKalb/Monsanto's (DKM) 3IIH6, PEI's PH207, PHG3BD2, Ohio Oh43, and Holden/Monsanto's (HFM) LH82. Minn13 descendents have maintained about 4% genetic contribution 1984 to 2008. Clustering pedigree based genetic distance of Minn13 derived progeny in today's corn showed three major pedigree groups: HFM's LH82, PEI, and DKM's Iodent. The latter two are Early Iodent germplasm.
    Type of Medium: Online Resource
    ISSN: 0011-183X , 1435-0653
    Language: English
    Publisher: Wiley
    Publication Date: 2010
    detail.hit.zdb_id: 1480918-7
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  • 6
    In: Crop Science, Wiley, Vol. 50, No. 2 ( 2010-03), p. 486-503
    Abstract: Plant variety protection laws based on the 1991 revision of the Union Internationale pour la Protection des Obtentions Vegetales (UPOV) include the concept of an essentially derived variety (EDV). It is widely accepted that molecular markers can provide data to help determine EDV status. We screened publicly available simple sequence repeat (SSR) loci using a set of inbred lines, including those that have been widely used or are of historic importance to maize ( Zea mays L.) breeding in the United States. As a result of that screening process we hereby publish a set of 285 SSRs that have been validated by the American Seed Trade Association (ASTA) for use in variety identification and for assistance in determining EDV status in U.S. maize. One hundred and fifty SSRs constitute the ASTA Core Set 1; additional data, if required, can be obtained by using the additional 135 SSRs. We also report on comparisons of abilities of the ASTA‐designated SSRs to discriminate among and show associations among inbred lines compared with results obtained from another (partially overlapping) set of SSRs selected by the French Association of Maize Breeders (SEPROMA). There was a high correlation ( R 2 = 0.79) for pairwise distances among a subset of 30 U.S. inbreds for SSR data obtained using the ASTA protocols compared with those obtained using the SEPROMA protocols. Consequently, there are now two published sets of protocols and procedures that can be used to assist in variety identification and in the determination of essential derivation in maize depending on circumstances and available resources.
    Type of Medium: Online Resource
    ISSN: 0011-183X , 1435-0653
    Language: English
    Publisher: Wiley
    Publication Date: 2010
    detail.hit.zdb_id: 1480918-7
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  • 7
    In: Crop Science, Wiley, Vol. 51, No. 4 ( 2011-07), p. 1470-1480
    Abstract: We examined the number, genomic coverage, and discrimination abilities of single nucleotide polymorphism (SNP) markers required to provide equivalent measures of genetic distance compared to previously assayed simple sequence repeat (SSR) loci among inbred lines of maize ( Zea mays L). A diverse set of public inbred lines was profiled with 768 public SNP markers and subsets of 601, 446, 305, 204, 165, 83, and 42 SNP markers were selected based on maintenance of expected heterozygosity ( He ) and/or even genomic coverage. The effectiveness of each SNP marker set was evaluated by comparison with standard SSR marker sets and pedigree distance values. Each marker set was evaluated using the full set of data for 80 diverse public inbred lines, a subset of inbred lines selected to represent the diversity of the full range of inbreds, and a subset of more closely related Stiff Stalk Synthetic (SSS) inbreds. A set of 305 SNP markers with mean He of greater than 0.4 had comparable or lower genetic distance sampling variance compared with SSR markers and resulted in r values comparable to larger SNP sets when pair‐wise Roger's distances were correlated with distance estimates generated from pedigree or SSR data. We found that, where SNP markers are selected to maintain high He and even genome coverage, then data from only 2 to 3 times the number of SNP markers are needed to reveal associations among lines compared with SSR markers.
    Type of Medium: Online Resource
    ISSN: 0011-183X , 1435-0653
    Language: English
    Publisher: Wiley
    Publication Date: 2011
    detail.hit.zdb_id: 1480918-7
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  • 8
    In: Crop Science, Wiley, Vol. 54, No. 1 ( 2014-01), p. 174-189
    Abstract: Maize ( Zea mays , L.) breeding research in the public sector involves identifying novel genes, alleles, and breeding procedures that have promising commercial applications, but this role is stymied due to limited access to commercial quality lines and hybrids. Use of lines recently released from Plant Variety Protection (PVP) may be a solution. Our overall goal was to investigate the extent and nature of the allelic diversity in elite maize germplasm at the molecular level and gain insight into how this allelic diversity relates to the performance of superior hybrids. The specific objectives were to (i) characterize the genetic composition of 12 selected elite inbreds, (ii) evaluate these inbreds and their 66 F 1 hybrids and segregating F 1 derived F 2 populations for an extensive number of leaf, tassel, and ear traits, including yield, and (iii) perform a statistical and quantitative genetic analysis to identify significant genetic variation thereof. Cluster analysis based on pedigree relationships and molecular markers indicated that the selected elite inbred parents are genetically diverse. Applying the Eberhart and Gardner general model we confirmed the presence of substantial additive, dominance, and epistatic variation in the elite germplasm selected and developed for this experiment. Experimental material derived from Ex‐PVP lines will be an important component of maize breeding research on increased productivity. In this research, hybrid mapping populations will prove to be invaluable for detection of nonadditive quantitative trait loci and association effects in yield related traits.
    Type of Medium: Online Resource
    ISSN: 0011-183X , 1435-0653
    Language: English
    Publisher: Wiley
    Publication Date: 2014
    detail.hit.zdb_id: 1480918-7
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  • 9
    Online Resource
    Online Resource
    Scientific Societies ; 2021
    In:  Plant Disease Vol. 105, No. 1 ( 2021-01), p. 156-163
    In: Plant Disease, Scientific Societies, Vol. 105, No. 1 ( 2021-01), p. 156-163
    Abstract: Goss’s bacterial wilt and leaf blight of corn (Zea mays), caused by Clavibacter nebraskensis, is a reemerging disease in the Midwestern United States. From 2011 to 2013, field studies and a greenhouse study were conducted to assess the University of Illinois maize inbred collection for putative sources of resistance to Goss’s bacterial wilt and leaf blight. This inbred collection consisted of over 2,000 diverse inbred corn lines that have been collected from all over the world. An initial field screen of over 1,000 inbred lines from the collection was conducted in Urbana, IL in 2011. These lines were inoculated with a C. nebraskensis cell suspension and rated for Goss’s bacterial wilt and leaf blight severity using a 1-to-9 scale, with a score of 1 being most resistant. Means for Goss’s bacterial wilt and leaf blight ratings ranged from 1 to 8.5. The initial screen identified over 150 lines that had high levels of resistance (severity score of ≤2.5). In total, 177 lines were used in the second stage of field screening. In the second stage, average Goss’s bacterial wilt and leaf blight severity ranged from 1.1 to 7.4. Nine lines with high levels of resistance in 2011 and 2012 were advanced to the third stage of field screening. The mean Goss’s bacterial wilt and leaf blight severity rating of the resistant lines in the last stage was 1.9, while the susceptible check had a mean score of 6.4. These nine lines were also used in the greenhouse to assess whether resistance varied based on inoculating roots, stems, or leaves. Disease severity was significantly (P ≤ 0.05) less when roots were inoculated compared with both leaf and stem inoculations, which were not significantly different from each other. Lines having high levels of field resistance were also found to be resistant in greenhouse screening regardless of inoculation method. Clustering of pedigree distance of the 34 resistant lines (severity score of ≤2.5) with known pedigree information found that 21 clustered with the Lancaster heterotic family, 4 were related to the Iowa Stiff Stalk Synthetic family, and 9 did not cluster with an identifiable heterotic family. These results show that the Lancaster family is an excellent source of Goss’s wilt resistance, and that fewer sources of resistance were found in other families. The most resistant lines identified from this research are potential sources of resistance to Goss’s bacterial wilt and leaf blight, and their lineage can be used in corn breeding programs to develop resistant hybrids.
    Type of Medium: Online Resource
    ISSN: 0191-2917 , 1943-7692
    Language: English
    Publisher: Scientific Societies
    Publication Date: 2021
    detail.hit.zdb_id: 2042679-3
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  • 10
    In: Weed Science, Cambridge University Press (CUP), Vol. 57, No. 5 ( 2009-10), p. 463-469
    Abstract: Recent advances in sequencing technologies (next-generation sequencing) offer dramatically increased sequencing throughput at a lower cost than traditional Sanger sequencing. This technology is changing genomics research by allowing large scale sequencing experiments in nonmodel systems. Waterhemp is an important weed in the midwestern United States with characteristics that makes it an interesting ecological model. However, very few genomic resources are available for this species. One half of a 70 by 75 picotiter plate of 454-pyrosequencing was performed on total DNA isolated from waterhemp, generating 158,015 reads of an average length of 271 bp, or a total of nearly 43 Mbp of sequence. Included in this sequence was a nearly complete sequence of the chloroplast genome, sequences of several important herbicide resistance genes, leads for simple sequence repeat (SSR) markers, and a sampling of the repeated elements (e.g., transposons) present in this species. Here we present the waterhemp genomic data gleaned from this sequencing experiment and illustrate the value of next-generation sequencing technology to weed science research.
    Type of Medium: Online Resource
    ISSN: 0043-1745 , 1550-2759
    Language: English
    Publisher: Cambridge University Press (CUP)
    Publication Date: 2009
    detail.hit.zdb_id: 2123881-9
    SSG: 12
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