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  • 1
    In: Zootaxa, Magnolia Press, Vol. 5104, No. 2 ( 2022-02-25), p. 209-241
    Abstract: The six species of mountain frogs (Philoria: Limnodynastidae: Anura) are endemic to south-eastern Australia. Five species occur in headwater systems in mountainous north-eastern New South Wales (NSW) and south-eastern Queensland (Qld), centred on the Gondwana Rainforests of Australia World Heritage Area. A previous molecular genetic analysis identified divergent genetic lineages in the central and western McPherson Ranges region of Qld and NSW, but sampling was inadequate to test the species status of these lineages. With more comprehensive geographic sampling and examination of the nuclear genome using SNP analysis, we show that an undescribed species, P. knowlesi sp. nov., occurs in the central and western McPherson Ranges (Levers Plateau and Mount Barney complex). The new species is not phylogenetically closely related to P. loveridgei in the nuclear data but is related to one of two divergent lineages within P. loveridgei in the mtDNA data. We postulate that the discordance between the nuclear and mtDNA outcomes is due to ancient introgression of the mtDNA genome from P. loveridgei into the new species. Male advertisement calls and multivariate morphological analyses do not reliably distinguish P. knowlesi sp. nov. from any of the Philoria species in northeast NSW and southeast Qld. The genetic comparisons also enable us to define further the distributions of P. loveridgei and P. kundagungan. Samples from the Lamington Plateau, Springbrook Plateau, Wollumbin (Mt Warning National Park), and the Nightcap Range, are all P. loveridgei, and its distribution is now defined as the eastern McPherson Ranges and Tweed caldera. Philoria kundagungan is distributed from the Mistake Mountains in south-eastern Qld to the Tooloom Scrub on the Koreelah Range, southwest of Woodenbong, in NSW, with two subpopulations identified by SNP analysis. We therefore assessed the IUCN threat category of P. loveridgei and P. kundagungan and undertook new assessments for each of its two subpopulations and for the new taxon P. knowlesi sp. nov., using IUCN Red List criteria. Philoria loveridgei, P. kundagungan (entire range and northern subpopulation separately) and P. knowlesi sp. nov. each meet criteria for “Endangered” (EN B2(a)(b)[i, iii]). The southern subpopulation of P. kundagungan, in the Koreelah Range, meets criteria for “Critically Endangered” (CE B2(a)(b)[i, iii] ). These taxa are all highly threatened due to the small number of known locations, the restricted nature of their breeding habitat, and direct and indirect threats from climate change, and the potential impact of the amphibian disease chytridiomycosis. Feral pigs are an emerging threat, with significant impacts now observed in Philoria breeding habitat in the Mistake Mountains.  
    Type of Medium: Online Resource
    ISSN: 1175-5334 , 1175-5326
    URL: Issue
    Language: Unknown
    Publisher: Magnolia Press
    Publication Date: 2022
    SSG: 12
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  • 2
    In: Zootaxa, Magnolia Press, Vol. 5057, No. 4 ( 2021-10-26), p. 451-486
    Abstract: The hip-pocket frog (Assa darlingtoni), a small terrestrial myobatrachid frog found in mid-eastern Australia, has a highly derived, unusual, reproductive mode involving a unique form of male parental care. Males have subcutaneous pouches that open near the hip, and the developing tadpoles are carried in these pouches to post metamorphosis. It is found on several isolated mountain ranges in closed forest habitats, associated with high rainfall and temperate or sub-tropical climates. We established genetic relationships among specimens sampled across the range using phylogenetic analyses of thousands of single nucleotide polymorphisms (SNPs) from the nuclear genome and mitochondrial ND2 gene nucleotide sequences. These analyses uncovered two lineages that are genetically distinct in both nDNA and mtDNA analyses and that have low levels of divergence in male advertisement calls and are morphologically cryptic. Our data support separate species status for each lineage, based on the molecular genetic data. The first, which we name as a new species, Assa wollumbin sp. nov., is restricted to a single mountain, Wollumbin (= Mount Warning), the eroded cone of an ancient shield volcano—the Tweed Volcano. The second, the nominal species A. darlingtoni, has a wider distribution in five geographically disjunct subpopulations along 430 km of the Great Dividing Range in south-eastern Queensland and north-eastern New South Wales. The distributions of the two species closely approach within 15 km of each other on the central plug and rim of the caldera of the Tweed Volcano. Assa wollumbin sp. nov. meets the conservation criteria for Critically Endangered [A3(e), B2(a,b)] . When all subpopulations of A. darlingtoni are combined the conservation assessment is Endangered [A3(e), B2(a,b)]. Because of the fragmented nature of the distribution of A. darlingtoni, combined with the genetic evidence of concordant sub-structuring, we also conducted a conservation assessment on the five subpopulations. Two were assessed as Critically Endangered (D’Aguilar Range and Conondale/Blackall Ranges), and the remainder as Endangered (Dorrigo Plateau, McPherson Ranges, and Gibraltar Ranges/Washpool).  
    Type of Medium: Online Resource
    ISSN: 1175-5334 , 1175-5326
    URL: Issue
    Language: Unknown
    Publisher: Magnolia Press
    Publication Date: 2021
    SSG: 12
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  • 3
    In: Zootaxa, Magnolia Press, Vol. 4858, No. 2 ( 2020-09-30)
    Abstract: Population declines and range contractions among Australian frogs that commenced in the early 1980s continue in some species that were once widespread. The generality of this pattern has been difficult to discern, especially for those species that are encountered rarely because they have restricted periods of calling activity with poorly defined habitat preferences, and are not common. Several lines of evidence indicate that Litoria littlejohni is such a species. This frog was once known from mid-eastern New South Wales to eastern Victoria, and evidence from wildlife atlas databases and targeted searches indicate that it has declined in large portions of its former range, leaving several populations that are isolated, in some cases restricted in distribution, and of small size. We investigated the relationships among populations using mitochondrial ND4 nucleotide sequences and single nucleotide polymorphisms (SNPs) from the nuclear genome. We found that northern and southern populations form two highly divergent genetic groups whose distributions abut at the southern margin of the Sydney Basin Bioregion and these genetic groups also show divergence in morphology and male advertisement calls. Here we describe the populations to the south of the Sydney Basin Bioregion as a new species and provide information on its distribution and ecology. In light of the apparent isolation and small size of known populations of the new species and the consequent restriction of the range of L. littlejohni, we assessed the conservation status of both species. 
    Type of Medium: Online Resource
    ISSN: 1175-5334 , 1175-5326
    URL: Issue
    Language: Unknown
    Publisher: Magnolia Press
    Publication Date: 2020
    SSG: 12
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  • 4
    Online Resource
    Online Resource
    CSIRO Publishing ; 2022
    In:  Australian Journal of Zoology Vol. 70, No. 3 ( 2022-12-9), p. 83-86
    In: Australian Journal of Zoology, CSIRO Publishing, Vol. 70, No. 3 ( 2022-12-9), p. 83-86
    Abstract: Cannibalism is a behaviour exhibited across amphibian life history stages; however, there are few records that involve cannibalism between siblings. Here, we describe observations of recently hatched tadpoles of the frog Philoria pughi consuming sibling embryos with delayed or failed development. Our observations indicate that additional nutrition is obtained from the ingested embryos, despite tadpoles of species of Philoria being capable of endotrophic development. This discovery should be considered when establishing captive breeding colonies for Philoria species and needs further investigation in wild populations.
    Type of Medium: Online Resource
    ISSN: 0004-959X , 1446-5698
    Language: English
    Publisher: CSIRO Publishing
    Publication Date: 2022
    SSG: 12
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  • 5
    In: Diversity and Distributions, Wiley, Vol. 29, No. 6 ( 2023-06), p. 785-800
    Abstract: Changes to the extent and severity of wildfires driven by anthropogenic climate change are predicted to have compounding negative consequences for ecological communities. While there is evidence that severe weather events like drought impact amphibian communities, the effects of wildfire on such communities are not well understood. The impact of wildfire on amphibian communities and species is likely to vary, owing to the diversity of their life‐history traits. However, no previous research has identified commonalities among the amphibians at most risk from wildfire, limiting conservation initiatives in the aftermath of severe wildfire. We aimed to investigate the impacts of the unprecedented 2019–2020 black summer bushfires on Australian forest amphibian communities. Location Eastern coast of New South Wales, Australia. Methods We conducted visual encounter surveys and passive acoustic monitoring across 411 sites within two regions, one in northeast and one in southeast New South Wales. We used fire severity and extent mapping in two multispecies occupancy models to assess the impacts of fire on 35 forest amphibian species. Results We demonstrate a negative influence of severe fire extent on metacommunity occupancy and species richness in the south with weaker effects in the north—reflective of the less severe fires that occurred in this region. Both threatened and common species were impacted by severe wildfire extent. Occupancy of burrowing species and rain forest specialists had mostly negative relationships with severe wildfire extent, while arboreal amphibians had neutral relationships. Main Conclusion Metacommunity monitoring and adaptive conservation strategies are needed to account for common species after severe climatic events. Ecological, morphological and life‐history variation drives the susceptibility of amphibians to wildfires. We document the first evidence of climate change‐driven wildfires impacting temperate forest amphibian communities across a broad geographic area, which raises serious concern for the persistence of amphibians under an increasingly fire‐prone climate.
    Type of Medium: Online Resource
    ISSN: 1366-9516 , 1472-4642
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2023
    detail.hit.zdb_id: 2020139-4
    detail.hit.zdb_id: 1443181-6
    SSG: 12
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  • 6
    In: Conservation Genetics, Springer Science and Business Media LLC, Vol. 24, No. 5 ( 2023-10), p. 575-588
    Abstract: The status of many amphibian populations remains unclear due to undetected declines driven by disease and difficulties in obtaining accurate population estimates. Here, we used genome complexity reduction-based sequencing technology to study the poorly understood Littlejohn’s treefrog , Litoria littlejohni across its fragmented distribution in eastern Australia. We detected five identifiable genetic clusters, with moderate to strong genetic isolation. At a regional scale, population isolation was likely driven by population crashes, resulting in small populations impacted by founder effects. Moderate genetic isolation was detected among populations on the Woronora Plateau despite short distances between population clusters. Evidence of recent declines was apparent in three populations that had very small effective population size, reduced genetic diversity and high inbreeding values. The rates of inbreeding detected in these populations combined with their small size leave these populations at elevated risk of extinction. The Cordeaux Cluster was identified as the most robust population as it was the largest and most genetically diverse. This study exemplifies the value of employing genetic methods to study rare, cryptic species. Despite low recapture rates using traditional capture-recapture demographic methods, we were able to derive population estimates, describe patterns of gene flow, and demonstrate the need for urgent conservation management.
    Type of Medium: Online Resource
    ISSN: 1566-0621 , 1572-9737
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2023
    detail.hit.zdb_id: 2015081-7
    SSG: 12
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  • 7
    In: Austral Ecology, Wiley, Vol. 48, No. 3 ( 2023-05), p. 585-599
    Abstract: Traditional methods for identifying individual amphibians in capture–mark–recapture (CMR) studies have been primarily confined to post‐metamorphic stages, using artificial markers that come with a variety of limitations. An alternative that may open CMR studies to earlier life stages involves the use of a species' natural external markers in photo‐based identification. In this study, we investigated whether it was possible to distinguish tadpoles of the threatened green and golden bell frog ( Litoria aurea ) at the individual level based on tail venation patterns. We collected photographs of the tails of captive‐raised tadpoles using a smartphone over a 4‐week period. This photo‐library was used to create an electronic survey where participants were asked to detect matches for query tadpoles from small image pools. We found that most participants agreed on a match for each query, with perfect consensus achieved for most queries (83%). We detected a 14% decline in perfect consensus when participants were asked to match images of tadpoles separated by longer time intervals, suggesting that it is more difficult to visually identify recapture events of L. aurea tadpoles over extended periods due to changes to tail appearance. However, consensus was obtained by participants for all queries, with all matches verified as being correct by the primary researcher. The strength of agreement among participants with no prior experience in matching tadpole tails suggests that there is sufficient inter‐individual variation in this feature for individuals to be manually identified. We thus propose that photo‐identification is likely to be a valid, non‐invasive technique that can be used for short‐term studies on tadpole populations that display tail venation. This offers an alternative to artificial markers that may not allow for individual identification, while also opening up tadpole monitoring programmes to citizen scientists who can be recruited online to process image data from home.
    Type of Medium: Online Resource
    ISSN: 1442-9985 , 1442-9993
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2023
    detail.hit.zdb_id: 2095166-8
    detail.hit.zdb_id: 2019899-1
    SSG: 12
    SSG: 14
    SSG: 7,29
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  • 8
    In: Austral Ecology, Wiley, Vol. 48, No. 5 ( 2023-08), p. 877-884
    Abstract: Conservation management cannot proceed in the absence of the basic ecological data necessary to develop conservation strategies for a species. Species considered Data Deficient and possibly extinct are poorly known, and are often overlooked in conservation planning. This is despite a growing body of evidence indicating that Data Deficient species are more likely to be threatened by extinction compared to well‐studied taxa. Hence, there is an immediate need to resolve data deficiency, and to search for species that are possibly extinct. Here, we conducted the first systematic search for a Data Deficient Australian skink, Lampropholis elongata (long sunskink), which prior to our study, had not been seen for approximately 9 years. A combination of pitfall trapping and active searches was used in attempt to detect the species. We rediscovered L. elongata at four sites within its known distribution on the southern edge of the New England Tablelands Bioregion in New South Wales, Australia. Our findings suggest that the species can be detected relatively easily using active survey methods, especially by inspecting tussock bases. We further highlight that areas of high canopy openness and high cover of Poa sieberiana (grey tussock‐grass) appear to be key habitat for the species.
    Type of Medium: Online Resource
    ISSN: 1442-9985 , 1442-9993
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2023
    detail.hit.zdb_id: 2095166-8
    detail.hit.zdb_id: 2019899-1
    SSG: 12
    SSG: 14
    SSG: 7,29
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  • 9
    In: Animals, MDPI AG, Vol. 13, No. 10 ( 2023-05-16), p. 1652-
    Abstract: Mycobacterium avium subspecies paratuberculosis (MAP) is the causative agent of Johne’s disease in ruminants, a chronic enteritis which results in emaciation and eventual loss of the animal. Recent advances in metagenomics have allowed a more in-depth study of complex microbiomes, including that of gastrointestinal tracts, and have the potential to provide insights into consequences of the exposure of an animal to MAP or other pathogens. This study aimed to investigate taxonomic diversity and compositional changes of the faecal microbiome of cattle experimentally challenged with MAP compared to an unexposed control group. Faecal swab samples were collected from a total of 55 animals [exposed group (n = 35) and a control group (n = 20)], across three time points (months 3, 6 and 9 post-inoculation). The composition and functional potential of the faecal microbiota differed across time and between the groups (p 〈 0.05), with the primary differences, from both a taxonomic and functional perspective, occurring at 3 months post inoculation. These included significant differences in the relative abundance of the genera Methanobrevibacter and Bifidobacterium and also of 11 other species (4 at a higher relative abundance in the exposed group and 7 at a higher relative abundance in the control group). Correlations were made between microbiome data and immunopathology measurements and it was noted that changes in the microbial composition correlated with miRNA-155, miR-146b and IFN-ɣ. In summary, this study illustrates the impact of exposure to MAP on the ruminant faecal microbiome with a number of species that may have relevance in veterinary medicine for tracking exposure to MAP.
    Type of Medium: Online Resource
    ISSN: 2076-2615
    Language: English
    Publisher: MDPI AG
    Publication Date: 2023
    detail.hit.zdb_id: 2606558-7
    SSG: 23
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  • 10
    In: Technical Reports of the Australian Museum online, Australian Museum, Vol. 30 ( 2020-05-20), p. 1-26
    Type of Medium: Online Resource
    ISSN: 1835-4211
    Language: Unknown
    Publisher: Australian Museum
    Publication Date: 2020
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