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  • 1
    In: The American Journal of Dermatopathology, Ovid Technologies (Wolters Kluwer Health), Vol. 42, No. 4 ( 2020-04), p. 265-271
    Abstract: Melanoma is an aggressive skin malignancy, and the acral lentiginous melanoma (ALM) subtype affects non–sun-exposed sites such as the volar surface of the hands and feet and the subungual region and is most common in Asians, Hispanics, and Afro-descendants. The presence of different clones within the same tumor seems to influence the aggressiveness of tumors. Patients with mutations in the KIT gene have shown a good response to tyrosine kinase inhibitor therapy. We tested the hypothesis of intratumor heterogeneity through analysis of KIT gene mutations in ALM and determined the correlation between KIT mutations and demographic, clinical, and histopathological variables. Twenty-five ALM samples were examined. We selected up to four different regions per tumor for sequencing by the Sanger method for analysis of KIT gene exon 11 and exon 13 mutations. Advanced lesions were predominant, and the main histopathological characteristics of lesions were Breslow index 〉 4.0 mm (17/25, 68%), Clark level IV/V (21/25, 84%), ulceration (16/25, 64%), and 〉 3 mitoses/mm 2 (8/25, 32%). KIT gene mutations were detected in 11/25 cases (44%), and all these 11 cases displayed intratumor heterogeneity, that is, at least 2 tumor regions had different mutational profiles. The predicted effect of most mutations detected was detrimental to protein function. No significant correlations between histopathological variables and either KIT mutations or intratumor heterogeneity were observed. The hypothesis of intratumor heterogeneity of KIT gene mutations in acral lentiginous melanoma was supported.
    Type of Medium: Online Resource
    ISSN: 0193-1091
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    Language: English
    Publisher: Ovid Technologies (Wolters Kluwer Health)
    Publication Date: 2020
    detail.hit.zdb_id: 2041296-4
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  • 2
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 80, No. 16_Supplement ( 2020-08-15), p. 2658-2658
    Abstract: Introduction Gallbladder adenocarcinoma (GBC) is a relatively rare malignancy with high mortality rate due to late stage discovery. At advanced-stages, there are limited treatment options, and most patients develop resistance to chemotherapy. Adapting the recent major advances in cancer immunotherapy specifically to GBC will require a deep understanding of the immune landscape. Our aim is to characterize Immune Checkpoint markers (IC), Tumor infiltrating Lymphocytes (TILs), and Myeloid cells (MCs), and associate them with cancer genomic alterations, clinic-pathological information, and patient survival. Methods We selected formalin-fixed and paraffin-embedded tumor tissues from surgically resected primary GBC (n=97 patients) without neoadjuvant therapy to construct a tissue microarray. Tumor samples were collected from two institutions (MD Anderson Cancer Center (MDACC), USA, n=53; Sotero del Rio Hospital (SRH), Chile, n=44). We performed immunohistochemistry with the following biomarkers: IC (PD-1, PD-L1, LAG-3, TIM-3, B7-H3, B7-H4, VISTA, ICOS, OX-40, IDO1), TILs (CD3, CD4, CD8, CD45RO, CD57, GZB, FOXP-3, CD20), and MCs (CD68, CD11b, CD14). The evaluation of PD-L1, B7-H3, B7-H4, and IDO1 was performed in malignant cells and scored as percentage of positive cells. The TILs and IC were scored as cell densities (n/mm2) using digital image analysis. Tumors were classified in 4 types based on PD-L1 expression and CD8 densities (cut-off median): I (PD-L1+/CD8high), II (PD-L1-/CD8low), III (PD-L1+/CD8low), and IV (PD-L1-/CD8high). Next Generation sequencing platform T200 was used to access genomic alterations in a subset of cases (n=58). Results Expression of PD-L1, B7-H3, B7-H4, and IDO1 (cutoff ≥1%) was 4, 12, 7, and 22 % respectively. From all tumors, 49% were type IV, 47% type II, 3% type I, and 1% type III. Comparing MDACC and SRH cohort, densities of CD3, CD4, TIM3, and PD-1 were higher in tumors from SRH (p & lt;0.001) while CD68 was higher in tumors from MDACC (p & lt;0.001). Higher CD57 was observed in pT1/pT2 tumors compared to pT3/pT4 (pT, pathological T) (p=0.003). Lower densities of VISTA (p =0.005 Long rank test) (cut-off: top quartile) correlated with higher overall survival rates in SRH cohort. The most frequent genomic alterations were (%): mutation in TP53 (38), SMAD4 (10), KRAS (10), ARID2 (9), BRCA2 (5); and amplifications in CCNE1 (14), ERRB2 (12) and MDM2/CDK4 (7). Mutations in ARID1A/ARID2/PBRM1 pathway had lower TIM3 densities (p=0.004), mutations in BRAF/KRAS had lower CD3, PD1 and ICOS densities (p=0.048; 0.004 and 0.0001 respectively), and mutations on PTEN/PI3KCA had lower CD68 densities (p=0.033). Amplifications of CCNE1 and ERBB2 had lower densities of OX40 (p=0.013; 0.029 respectively). Conclusions We characterize the immunological landscape of gallbladder adenocarcinoma. Most tumors were immune ignorant or tolerant (Type II or IV). Different genomic alterations may have distinct immune patterns. Citation Format: Fernando Cintra Lopes Carapeto, Luisa Maren Solis Soto, Wai Chin Foo, Wei Lu, Eduardo A. Vinuela Fawaz, Miguel A. Villaseca, Eduardo Alberto Vega Pizarro, Juan C. Araya, Ignacio I. Wistuba, Javle Milind, Pant Shubham, Lawrence Kwong. Immunological and mutational landscape of gallbladder adenocarcinoma [abstract] . In: Proceedings of the Annual Meeting of the American Association for Cancer Research 2020; 2020 Apr 27-28 and Jun 22-24. Philadelphia (PA): AACR; Cancer Res 2020;80(16 Suppl):Abstract nr 2658.
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
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    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2020
    detail.hit.zdb_id: 2036785-5
    detail.hit.zdb_id: 1432-1
    detail.hit.zdb_id: 410466-3
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  • 3
    In: Surgical and Experimental Pathology, Springer Science and Business Media LLC, Vol. 1, No. 1 ( 2018-12)
    Abstract: GIST is the most common mesenchymal tumor of gastrointestinal tract and is more frequent in stomach. Its main mutations affect KIT and PDGFRA genes. Full genetic analysis panels are currently used to study mutations in GIST and other tumors. Considering that in gastric GIST KIT gene mutations in exon 11 are sensitive to IM whereas PDGFRΑ gene mutations in exon 18 (D842V) are resistant to the same drug, the aim of this study is to focus on these two molecular targets as a short alternative panel for predicting therapeutic response in gastric GIST which might optimize resources. Methods The genotypes of 38 cases of primary GIST were determined by performing bidirectional DNA sequencing. Results Exon 11 of KIT gene showed mutations in 65.3% and the exon 18 of PDGFRA gene showed 9% of cases. So it was possible to determine a subgroup of tumors which presented mutations in KIT exon 11 and PDGFRA exon 18. Conclusion Considering all of the foregoing analyzed globally, the application of short panel has impact on the cost and time of release of results to the physician, allowing a rapid approach to patients eligible for treatment with the target therapy.
    Type of Medium: Online Resource
    ISSN: 2520-8454
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2018
    detail.hit.zdb_id: 2949949-5
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  • 4
    Online Resource
    Online Resource
    FapUNIFESP (SciELO) ; 2019
    In:  Anais Brasileiros de Dermatologia Vol. 94, No. 4 ( 2019-08), p. 458-460
    In: Anais Brasileiros de Dermatologia, FapUNIFESP (SciELO), Vol. 94, No. 4 ( 2019-08), p. 458-460
    Type of Medium: Online Resource
    ISSN: 1806-4841 , 0365-0596
    Language: English
    Publisher: FapUNIFESP (SciELO)
    Publication Date: 2019
    detail.hit.zdb_id: 2145422-X
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  • 5
    In: Journal of Clinical Oncology, American Society of Clinical Oncology (ASCO), Vol. 33, No. 15_suppl ( 2015-05-20), p. e20092-e20092
    Type of Medium: Online Resource
    ISSN: 0732-183X , 1527-7755
    RVK:
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    Language: English
    Publisher: American Society of Clinical Oncology (ASCO)
    Publication Date: 2015
    detail.hit.zdb_id: 2005181-5
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  • 6
    In: Journal of Clinical Oncology, American Society of Clinical Oncology (ASCO), Vol. 36, No. 15_suppl ( 2018-05-20), p. 9568-9568
    Type of Medium: Online Resource
    ISSN: 0732-183X , 1527-7755
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    Language: English
    Publisher: American Society of Clinical Oncology (ASCO)
    Publication Date: 2018
    detail.hit.zdb_id: 2005181-5
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  • 7
    In: The American Journal of Dermatopathology, Ovid Technologies (Wolters Kluwer Health), Vol. 41, No. 10 ( 2019-10), p. 733-740
    Abstract: The choice of appropriate therapeutic strategies may be influenced by intratumor heterogeneity and makes cancer treatment considerably more challenging. We aimed to evaluate the heterogeneity of BRAF exon 15 mutations in different areas of acral lentiginous melanoma (ALM). The entire exon 15 was sequenced in 4 different areas of paraffin-embedded samples from 26 patients with ALM. A total of 26 of 49 cases of ≥1 mm in depth of ALM identified by clinical, anatomical, and pathological data fulfilled the inclusion and exclusion criteria for this study. Tumors had a mean Breslow depth of 7.2 mm and an average mitotic index of 3 mitosis/mm 2 . Mutations distinct from the common V600E and V600K were detected in 31%, and intratumor heterogeneity was observed in 31% of samples. Interestingly, 63.5% of all mutations had been previously associated with cancer. Most (62.5%) of the missense BRAF exon 15 mutations found in the ALM samples examined here were deemed “detrimental” for protein function according to at least 2 functional prediction programs, and 3 mutations (37.5%) were predicted to be “neutral,” with no effect on protein function. BRAF exon 15 mutations were detected frequently in ALM and displayed heterogeneity, a finding to be further investigated.
    Type of Medium: Online Resource
    ISSN: 0193-1091
    RVK:
    Language: English
    Publisher: Ovid Technologies (Wolters Kluwer Health)
    Publication Date: 2019
    detail.hit.zdb_id: 2041296-4
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  • 8
    In: The American Journal of Dermatopathology, Ovid Technologies (Wolters Kluwer Health), Vol. 39, No. 2 ( 2017-02), p. 114-120
    Abstract: Samples of acral lentiginous melanomas (ALMs) were obtained from the Department of Pathology at Escola Paulista de Medicina—Universidade Federal de São Paulo (UNIFESP), São Paulo, Brazil. Demographic, clinical, and follow-up data were obtained from the charts of Hospital São Paulo. From 2 tissue microarrays containing 60 nevi and quadruplicate samples of ≥1.0-mm of 49 ALM, sections were stained to evaluate SCF, KIT, BRAF, CYCLIND1, MYC, and PTEN immunohistochemical protein expression. Results: Nevi and ALM from 2006 to 2010 were reviewed and collected. All specimens were in the vertical growth phase, and histopathological parameters indicated that tumors were at an advanced stage at diagnosis. Average tumor thickness was 6.95 mm, 63% were ulcerated, average mitotic index was 5 mitotic cells per mm 2 , and 43% were at Clark's level V. Compared with nevi, the χ 2 test showed that ALM significantly correlated with SCF protein expression ( P = 0.001) and expression heterogeneity ( P 〈 0.000). Similar findings were observed for KIT ( P = 0.005, P = 0.003, respectively), MYC ( P 〈 0.000, P 〈 0.000), and PTEN ( P = 0.005, P 〈 0.000). Malignancy did not correlate with BRAF and CYCLIN D1 expression ( P = 0.053 and P = 0.259, respectively), but it did significantly correlate with their heterogeneous expression ( P 〈 0.000, P = 0.024, respectively). Combined protein expression had an odds ratio of greater malignancy when BRAF and MYC were positive and/or heterogeneously expressed (OR of 78 and 95, respectively). Discussion and Conclusion: We show that marker protein expression, when combined with heterogeneous expression as shown by immunohistochemistry, is a powerful indicator of malignancy in ALMs, especially, when protein pairs are combined.
    Type of Medium: Online Resource
    ISSN: 0193-1091
    RVK:
    Language: English
    Publisher: Ovid Technologies (Wolters Kluwer Health)
    Publication Date: 2017
    detail.hit.zdb_id: 2041296-4
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