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  • 1
    Online Resource
    Online Resource
    IOP Publishing ; 2006
    In:  Physics World Vol. 19, No. 8 ( 2006-08), p. 52-52
    In: Physics World, IOP Publishing, Vol. 19, No. 8 ( 2006-08), p. 52-52
    Type of Medium: Online Resource
    ISSN: 0953-8585 , 2058-7058
    RVK:
    Language: Unknown
    Publisher: IOP Publishing
    Publication Date: 2006
    detail.hit.zdb_id: 2027200-5
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  • 2
    Online Resource
    Online Resource
    American Association of Physics Teachers (AAPT) ; 2008
    In:  The Physics Teacher Vol. 46, No. 8 ( 2008-11-01), p. 467-472
    In: The Physics Teacher, American Association of Physics Teachers (AAPT), Vol. 46, No. 8 ( 2008-11-01), p. 467-472
    Abstract: A pair of fine tweezers and a steady hand may well be enough to pick up a grain of sand, but what would you use to hold something hundreds of times smaller still, the size of only one micron? The answer is to use a device that is not mechanical in nature but that relies instead on the tiny forces that light exerts on small particles: “optical tweezers.” In recent years, this technique has become central to nanotechnology for the manipulation of small particles, even individual molecules. It is also an ideal illustration of how classroom physics is applied to cutting-edge research, combining concepts such as the vector nature of momentum and force, Newton's laws, optics, the wave-particle duality of light, and thermodynamics. The physics behind optical tweezers has many layers of complexity, but it can be reduced to a basic principle: the conservation of momentum. This paper guides the reader through a much simplified demonstration of this “tweezing effect” using a question-answer approach, leaving the reader with the choice to treat each step as a problem exercise.
    Type of Medium: Online Resource
    ISSN: 0031-921X , 1943-4928
    Language: English
    Publisher: American Association of Physics Teachers (AAPT)
    Publication Date: 2008
    detail.hit.zdb_id: 2066897-1
    detail.hit.zdb_id: 391692-3
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  • 3
    Online Resource
    Online Resource
    ASME International ; 2011
    In:  Journal of Biomechanical Engineering Vol. 133, No. 1 ( 2011-01-01)
    In: Journal of Biomechanical Engineering, ASME International, Vol. 133, No. 1 ( 2011-01-01)
    Abstract: The elastic properties of the cell membrane play a crucial role in determining the equilibrium shape of the cell, as well as its response to the external forces it experiences in its physiological environment. Red blood cells are a favored system for studying membrane properties because of their simple structure: a lipid bilayer coupled to a membrane cytoskeleton and no cytoplasmic cytoskeleton. An optical trap is used to stretch a red blood cell, fixed to a glass surface, along its symmetry axis by pulling on a micron-sized latex bead that is bound at the center of the exposed cell dimple. The system, at equilibrium, shows Hookean behavior with a spring constant of 1.5×10−6 N/m over a 1–2 μm range of extension. This choice of simple experimental geometry preserves the axial symmetry of the native cell throughout the stretch, probes membrane deformations in the small-extension regime, and facilitates theoretical analysis. The axisymmetry makes the experiment amenable to simulation using a simple model that makes no a priori assumption on the relative importance of shear and bending in membrane deformations. We use an iterative relaxation algorithm to solve for the geometrical configuration of the membrane at mechanical equilibrium for a range of applied forces. We obtain estimates for the out-of-plane membrane bending modulus B≈1×10−19 Nm and an upper limit to the in-plane shear modulus H 〈 2×10−6 N/m. The partial agreement of these results with other published values may serve to highlight the dependence of the cell’s resistance to deformation on the scale and geometry of the deformation.
    Type of Medium: Online Resource
    ISSN: 0148-0731 , 1528-8951
    Language: English
    Publisher: ASME International
    Publication Date: 2011
    SSG: 31
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  • 4
    Online Resource
    Online Resource
    Frontiers Media SA ; 2018
    In:  Frontiers in Physiology Vol. 9 ( 2018-2-23)
    In: Frontiers in Physiology, Frontiers Media SA, Vol. 9 ( 2018-2-23)
    Type of Medium: Online Resource
    ISSN: 1664-042X
    Language: Unknown
    Publisher: Frontiers Media SA
    Publication Date: 2018
    detail.hit.zdb_id: 2564217-0
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  • 5
    Online Resource
    Online Resource
    Elsevier BV ; 2008
    In:  Biophysical Journal Vol. 94, No. 6 ( 2008-03), p. 2160-2169
    In: Biophysical Journal, Elsevier BV, Vol. 94, No. 6 ( 2008-03), p. 2160-2169
    Type of Medium: Online Resource
    ISSN: 0006-3495
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2008
    detail.hit.zdb_id: 1477214-0
    SSG: 12
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  • 6
    Online Resource
    Online Resource
    The Royal Society ; 2014
    In:  Interface Focus Vol. 4, No. 6 ( 2014-12-06), p. 20140006-
    In: Interface Focus, The Royal Society, Vol. 4, No. 6 ( 2014-12-06), p. 20140006-
    Abstract: The integration of protein function studied in vitro in a dynamic system like the cell lamellipodium remains a significant challenge. One reason is the apparent contradictory effect that perturbations of some proteins can have on the overall lamellipodium dynamics, depending on exact conditions. Theoretical modelling offers one approach for understanding the balance between the mechanisms that drive and regulate actin network growth and decay. Most models use a ‘bottom-up’ approach, involving explicitly assembling biochemical components to simulate observable behaviour. Their correctness therefore relies on both the accurate characterization of all the components and the completeness of the relevant processes involved. To avoid potential pitfalls due to this uncertainty, we used an alternative ‘top-down’ approach, in which measurable features of lamellipodium behaviour, here observed in two different cell types (HL60 and B16-F1), directly inform the development of a simple phenomenological model of lamellipodium dynamics. We show that the kinetics of F-actin association and dissociation scales with the local F-actin density, with no explicit location dependence. This justifies the use of a simplified kinetic model of lamellipodium dynamics that yields predictions testable by pharmacological or genetic intervention. A length-scale parameter (the lamellipodium width) emerges from this analysis as an experimentally accessible probe of network regulatory processes.
    Type of Medium: Online Resource
    ISSN: 2042-8898 , 2042-8901
    Language: English
    Publisher: The Royal Society
    Publication Date: 2014
    detail.hit.zdb_id: 2585655-8
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  • 7
    In: Bulletin du Cancer, Elsevier BV, Vol. 107, No. 12 ( 2020-12), p. S193-S201
    Type of Medium: Online Resource
    ISSN: 0007-4551
    Language: French
    Publisher: Elsevier BV
    Publication Date: 2020
    detail.hit.zdb_id: 213270-9
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  • 8
    Online Resource
    Online Resource
    Elsevier BV ; 2023
    In:  Biophysical Journal Vol. 122, No. 3 ( 2023-02), p. 384a-
    In: Biophysical Journal, Elsevier BV, Vol. 122, No. 3 ( 2023-02), p. 384a-
    Type of Medium: Online Resource
    ISSN: 0006-3495
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2023
    detail.hit.zdb_id: 1477214-0
    SSG: 12
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  • 9
    Online Resource
    Online Resource
    Proceedings of the National Academy of Sciences ; 2006
    In:  Proceedings of the National Academy of Sciences Vol. 103, No. 5 ( 2006-01-31), p. 1278-1282
    In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 103, No. 5 ( 2006-01-31), p. 1278-1282
    Abstract: Myosin generates force by a rotation of its lever arm. Crystal structures of myosin II indicate an unloaded working stroke of 10–12 nm, a range confirmed by recent x-ray interference experiments. However, when an actin filament, held between two weakly, optically trapped beads is made to interact with a single head of skeletal myosin, the bead displacements have often been reported as having a mean value of 5–6 nm, a value that is commonly interpreted as the working stroke. In general, the observed displacement is not expected to be equal to the working stroke because the kinetics of the stroke is necessarily strain-dependent: this effect biases the frequency of binding events to different actin sites so that displacements smaller than the working stroke are preferentially selected. Our analysis is tailored to current trap experiments, in which the time resolution is insufficient to detect prerigor states. If the preceding transitions are in equilibrium, the mean displacement is zero, contrary to observations in the presence of ATP. However, under ATP-cycling conditions, we find that the mean displacement is deflated to 0.3–0.7 of the true working stroke, depending on the equilibrium constant of the stroke and the rate at which the first myosin product state can detach from actin. The primary working stroke of processive myosin motors as measured by optical trapping is similarly uncertain.
    Type of Medium: Online Resource
    ISSN: 0027-8424 , 1091-6490
    RVK:
    RVK:
    Language: English
    Publisher: Proceedings of the National Academy of Sciences
    Publication Date: 2006
    detail.hit.zdb_id: 209104-5
    detail.hit.zdb_id: 1461794-8
    SSG: 11
    SSG: 12
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  • 10
    Online Resource
    Online Resource
    Wiley ; 2014
    In:  The Journal of Physiology Vol. 592, No. 24 ( 2014-12-15), p. 5355-5371
    In: The Journal of Physiology, Wiley, Vol. 592, No. 24 ( 2014-12-15), p. 5355-5371
    Abstract: The sodium/potassium pump is a membrane protein that maintains the Na + and K + concentration gradients across the plasma membrane and is therefore a key component of the cardiac contraction mechanism. Numerical models of the pump provide insight into its physiological role but most existing models neglect the significant known quantitative differences in pump kinetics between different species. We developed a biophysical mechanistic modelling framework, designed specifically to enable a fully consistent species‐specific characterisation of the pump function. We applied this framework to generate two separate species‐specific models, for the guinea pig and rat, and compared their respective kinetics in terms of objectively characterised biophysical parameters. We incorporated our rat‐specific Na + /K + ATPase model into a whole‐cell simulation and, for the first time, were able to reproduce measurements of the steady‐state intracellular sodium concentration as a function of pacing frequency. Abstract The Na + /K + ATPase (NKA) plays a critical role in maintaining ionic homeostasis and dynamic function in cardiac myocytes, within both the in vivo cell and in silico models. Physiological conditions differ significantly between mammalian species. However, most existing formulations of NKA used to simulate cardiac function in computational models are derived from a broad range of experimental sources spanning many animal species. The resultant inability of these models to discern species‐specific features is a significant obstacle to achieving a detailed quantitative and comparative understanding of physiological behaviour in different biological contexts. Here we present a framework for characterising the steady‐state NKA current using a biophysical mechanistic model specifically designed to provide a mechanistic explanation of the NKA flux supported by self‐consistent species‐specific data. We thus compared NKA kinetics specific to guinea‐ pig and rat ventricular myocytes. We observe that the apparent binding affinity for sodium in the rat is significantly lower, whereas the overall pump cycle rate is doubled, in comparison to the guinea pig. This sensitivity of NKA to its regulatory substrates compensates for the differences in Na + concentrations between the cell types. NKA is thereby maintained within its dynamic range over a wide range of pacing frequencies in these two species, despite significant disparities in sodium concentration. Hence, by replacing a conventional generic NKA model with our rat‐specific NKA formula into a whole‐cell simulation, we have, for the first time, been able to accurately reproduce the action potential duration and the steady‐state sodium concentration as functions of pacing frequency.
    Type of Medium: Online Resource
    ISSN: 0022-3751 , 1469-7793
    URL: Issue
    RVK:
    Language: English
    Publisher: Wiley
    Publication Date: 2014
    detail.hit.zdb_id: 1475290-6
    SSG: 12
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