In:
PLOS Computational Biology, Public Library of Science (PLoS), Vol. 18, No. 5 ( 2022-5-19), p. e1010081-
Abstract:
Ethanol alters many subsystems of Saccharomyces cerevisiae , including the cell cycle. Two ethanol-responsive lncRNAs in yeast interact with cell cycle proteins, and here, we investigated the role of these RNAs in cell cycle. Our network dynamic modeling showed that higher and lower ethanol-tolerant strains undergo cell cycle arrest in mitosis and G1 phases, respectively, during ethanol stress. The higher population rebound of the lower ethanol-tolerant phenotype after stress relief responds to the late phase arrest. We found that the lncRNA lnc9136 of SEY6210 (a lower ethanol-tolerant strain) induces cells to skip mitosis arrest. Simulating an overexpression of lnc9136 and analyzing CRISPR–Cas9 mutants lacking this lncRNA suggest that lnc9136 induces a regular cell cycle even under ethanol stress, indirectly regulating Swe1p and Clb1/2 by binding to Gin4p and Hsl1p. Notably, lnc10883 of BY4742 (a higher ethanol-tolerant strain) does not prevent G1 arrest in this strain under ethanol stress. However, lnc19883 circumvents DNA and spindle damage checkpoints, maintaining a functional cell cycle by interacting with Mec1p or Bub1p even in the presence of DNA/spindle damage. Overall, we present the first evidence of direct roles for lncRNAs in regulating yeast cell cycle proteins, the dynamics of this system in different ethanol-tolerant phenotypes, and a new yeast cell cycle model.
Type of Medium:
Online Resource
ISSN:
1553-7358
DOI:
10.1371/journal.pcbi.1010081
DOI:
10.1371/journal.pcbi.1010081.g001
DOI:
10.1371/journal.pcbi.1010081.g002
DOI:
10.1371/journal.pcbi.1010081.g003
DOI:
10.1371/journal.pcbi.1010081.g004
DOI:
10.1371/journal.pcbi.1010081.g005
DOI:
10.1371/journal.pcbi.1010081.g006
DOI:
10.1371/journal.pcbi.1010081.t001
DOI:
10.1371/journal.pcbi.1010081.t002
DOI:
10.1371/journal.pcbi.1010081.s001
DOI:
10.1371/journal.pcbi.1010081.s002
DOI:
10.1371/journal.pcbi.1010081.s003
DOI:
10.1371/journal.pcbi.1010081.s004
DOI:
10.1371/journal.pcbi.1010081.s005
DOI:
10.1371/journal.pcbi.1010081.s006
DOI:
10.1371/journal.pcbi.1010081.s007
DOI:
10.1371/journal.pcbi.1010081.s008
DOI:
10.1371/journal.pcbi.1010081.s009
DOI:
10.1371/journal.pcbi.1010081.s010
DOI:
10.1371/journal.pcbi.1010081.s011
Language:
English
Publisher:
Public Library of Science (PLoS)
Publication Date:
2022
detail.hit.zdb_id:
2193340-6
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