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  • 1
    Online Resource
    Online Resource
    Springer Science and Business Media LLC ; 2023
    In:  Scientific Reports Vol. 13, No. 1 ( 2023-02-03)
    In: Scientific Reports, Springer Science and Business Media LLC, Vol. 13, No. 1 ( 2023-02-03)
    Abstract: We investigated the physiological and transcriptomic response of Escherichia coli at the early stationary phase to light-emitting diodes with different wavelengths. The growth and metabolic changes of E. coli O157:H7 were examined under the influence of 465, 520, and 625 nm illuminated light. Under 465 nm illumination, the growth of E. coli O157:H7 was significantly retarded compared to 520 nm and 625 nm illumination and non-illuminated control. Metabolic changes were examined under these illumination and non-illuminated conditions based on transcriptomic reads. Transcriptomic response under 520 nm and 625 nm remained almost similar to control except few up-and down-regulated genes. Carbohydrates metabolic transcriptomic reads were greatly down-regulated under 465 nm illumination compared to 520 nm and 625 nm illumination and non-illuminated control showing depletion of glucose as a sole energy source during the exponential phase. Fatty acid degradation such as fad regulon-related genes was up-regulated in cells under 465 nm illumination revealing the shifting of cells to use fatty acid as a new carbon energy source during the early stationary phase. Exposure of E. coli O157:H7 cells to 465 nm illuminated light down-regulated virulence factor genes such as hlyA , hlyB , hlyC , stx1A , stx2B , paa , and bdm . Under the stress of 465 nm illumination, expression of stress and flagellar motility-related genes were up-regulated causing consumption of energy and reduction in cell growth. Also, oxidative phosphorylated transcriptomic reads were up-regulated under 465 nm illumination probably due to the production of ROS that might involve in the reduction of cell growth during the early stationary phase. These results indicate that pathogenic E. coli O157:H7 respond differentially to a different wavelength of the light-emitting diodes used in this study.
    Type of Medium: Online Resource
    ISSN: 2045-2322
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2023
    detail.hit.zdb_id: 2615211-3
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  • 2
    Online Resource
    Online Resource
    Korean Society for Microbiology and Biotechnology ; 2021
    In:  Journal of Microbiology and Biotechnology Vol. 31, No. 9 ( 2021-09-28), p. 1210-1217
    In: Journal of Microbiology and Biotechnology, Korean Society for Microbiology and Biotechnology, Vol. 31, No. 9 ( 2021-09-28), p. 1210-1217
    Type of Medium: Online Resource
    ISSN: 1017-7825 , 1738-8872
    Language: English
    Publisher: Korean Society for Microbiology and Biotechnology
    Publication Date: 2021
    detail.hit.zdb_id: 2412195-2
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  • 3
    Online Resource
    Online Resource
    Korean Society for Food Science of Animal Resources ; 2023
    In:  Food Science of Animal Resources Vol. 43, No. 4 ( 2023-07), p. 712-720
    In: Food Science of Animal Resources, Korean Society for Food Science of Animal Resources, Vol. 43, No. 4 ( 2023-07), p. 712-720
    Type of Medium: Online Resource
    ISSN: 2636-0772 , 2636-0780
    Language: English
    Publisher: Korean Society for Food Science of Animal Resources
    Publication Date: 2023
    detail.hit.zdb_id: 3016289-0
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  • 4
    Online Resource
    Online Resource
    Microbiology Society ; 2020
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 70, No. 2 ( 2020-02-01), p. 797-804
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 70, No. 2 ( 2020-02-01), p. 797-804
    Abstract: A Gram-stain-negative, strictly aerobic and moderately halophilic bacterial strain, designated strain PoM-212 T , was isolated from a marine alga, Porphyridium marinum , in the Republic of Korea. Cells were catalase- and oxidase-positive rods with gliding motility without flagellum. Growth was observed at 20–40 °C (optimum, 30 °C) and pH 5.0–8.5 (pH 5.0–5.5) and in the presence of 0.5–5 % (w/v) NaCl (2–3 %). Strain PoM-212 T contained iso-C 15 : 1 , iso-C 15 : 0 , iso-C 17 : 0 3-OH and summed feature 3 (comprising C 16 : 1 ω7 c and/or C 16 : 1 ω6 c ) as major fatty acids and menaquinone-6 as the sole isoprenoid quinone. Phosphatidylethanolamine, three unidentified aminolipids and two unidentified polar lipids were detected as major polar lipids. The G+C content of the genomic DNA was 41.0 mol%. Strain PoM-212 T was most closely related to Maribacter lutimaris KJ4 T , Maripseudobacter aurantiacus CDA4 T and Maribacter flavus C3 T with 97.2, 97.2 and 97.0 % 16S rRNA gene sequence similarities, respectively, and it formed a distinct phylogenetic lineage from them within the genus Maribacter . Maripseudobacter aurantiacus formed a close phylogenetic lineage with Maribacter flavus with 99.7 % 16S rRNA gene sequence similarity, but their digital DNA–DNA hybridization value was 67.4 %. On the basis of its phenotypic, chemotaxonomic and molecular properties, strain PoM-212 T represents a novel species of the genus Maribacter , for which the name Maribacter algicola sp. nov. is proposed. The type strain is PoM-212 T (=KACC 19789 T =JCM 32941 T ). The transfer of Maripseudobacter aurantiacus to the genus Maribacter as Maribacter aurantiacus comb. nov. is also proposed (type strain CDA4 T =KCTC 52409 T =MCCC 1K03210 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2020
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 5
    Online Resource
    Online Resource
    Microbiology Society ; 2020
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 70, No. 4 ( 2020-04-01), p. 2239-2246
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 70, No. 4 ( 2020-04-01), p. 2239-2246
    Abstract: A Gram-negative, moderately halophilic and facultatively aerobic bacterium, designated strain GTF13 T , was isolated from a sea tidal flat. Cells were curved rods and motile by a single polar flagellum showing catalase and oxidase activities. Growth was observed at 20–37 °C, pH 5.0–8.5 and 1.0–6.0 % (w/v) NaCl. Strain GTF13 T contained C 16:0, summed feature 3 (comprising C 16 : 1   ω6 c /C 16 : 1   ω7 c ), summed feature 8 (comprising C 18 : 1   ω6c/C 18 : 1   ω7 c ) and C 12 : 0 3-OH as major fatty acids and ubiquinone-9 and ubiquinone-8 as major quinones. Phosphatidylethanolamine and two unidentified phospholipids were detected as major polar lipids. The G+C content of the genomic DNA was 59.8 mol%. Strain GTF13 T was most closely related to Simiduia agarivorans SA1 T , Endozoicomonas montiporae CL-33 T and Pseudomonas segetis FR1439 T , belonging to different families or orders of the class Gammaproteobacteria , with less than 92.0 % 16S rRNA gene sequence similarities. Phylogenetic analyses based on 16S rRNA gene sequences showed that strain GTF13 T formed a phylogenetic lineage with the family Litoricolaceae , but the genome-based phylogenomic tree showed that strain GTF13 T formed a distinct phylogenetic lineage within the order Oceanospirillales . The very low 16S rRNA gene sequence similarities and distinct phylogenetic relationships, together with distinct phenotypic and chemotaxonomic properties, served to differentiate strain GTF13 T from phylogenetically closely related families. Here, strain GTF13 T is proposed as a novel genus and species, for which the name Aestuariirhabdus litorea gen. nov., sp. nov. is proposed, within a new family Aestuariirhabdaceae fam. nov. of the order Oceanospirillales . The type strain is GTF13 T (=KACC 19788 T =JCM 32043 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2020
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 6
    Online Resource
    Online Resource
    Springer Science and Business Media LLC ; 2021
    In:  Current Microbiology Vol. 78, No. 7 ( 2021-07), p. 2548-2555
    In: Current Microbiology, Springer Science and Business Media LLC, Vol. 78, No. 7 ( 2021-07), p. 2548-2555
    Type of Medium: Online Resource
    ISSN: 0343-8651 , 1432-0991
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2021
    detail.hit.zdb_id: 1458987-4
    SSG: 12
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  • 7
    Online Resource
    Online Resource
    Springer Science and Business Media LLC ; 2020
    In:  Current Microbiology Vol. 77, No. 10 ( 2020-10), p. 3179-3184
    In: Current Microbiology, Springer Science and Business Media LLC, Vol. 77, No. 10 ( 2020-10), p. 3179-3184
    Type of Medium: Online Resource
    ISSN: 0343-8651 , 1432-0991
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2020
    detail.hit.zdb_id: 1458987-4
    SSG: 12
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  • 8
    Online Resource
    Online Resource
    Springer Science and Business Media LLC ; 2021
    In:  Current Microbiology Vol. 78, No. 8 ( 2021-08), p. 3299-3306
    In: Current Microbiology, Springer Science and Business Media LLC, Vol. 78, No. 8 ( 2021-08), p. 3299-3306
    Type of Medium: Online Resource
    ISSN: 0343-8651 , 1432-0991
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2021
    detail.hit.zdb_id: 1458987-4
    SSG: 12
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  • 9
    Online Resource
    Online Resource
    Microbiology Society ; 2020
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 70, No. 11 ( 2020-11-01), p. 5634-5639
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 70, No. 11 ( 2020-11-01), p. 5634-5639
    Abstract: A Gram-stain-negative, strictly aerobic bacterium, designated strain PeD5 T , was isolated from a green alga Pediastrum duplex from the Nakdong river of the Republic of Korea. Cells were non-motile cocci, catalase-negative and oxidase-positive. Growth of PeD5 T was observed at 25–40 °C (optimum, 35 °C) and pH 5.0–10.0 (optimum, pH 7–8), and in the presence of 0–0.25% (w/v) NaCl (optimum, 0%). PeD5 T contained C 16:0 , C 18:1 ω7 c 11-methyl, summed feature 3 (comprising C 16:1 ω7 c and/or C 16:1 ω6 c ) and summed feature 8 (comprising C 18:1 ω7 c and/or C 18:1 ω6 c ) as major cellular fatty acids ( 〉 5%) and ubiquinone-10 as the sole isoprenoid quinone. Phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, an unidentified phospholipid and an unidentified aminolipid were detected as major polar lipids. The genomic DNA G+C content of PeD5 T was 71.0 mol%. PeD5 T was most closely related to Roseomonas stagni HS-69 T with a 97.6% 16S rRNA sequence similarity and shared less than 96.3% 16S rRNA sequence similarities with type strains of other species. Phylogenetic analysis based on 16S rRNA gene sequences indicated that PeD5 T formed a phyletic lineage with Roseomonas stagni HS-69 T within the genus Roseomonas . On the basis of results of phenotypic, chemotaxonomic and molecular analysis, strain PeD5 T clearly represents a novel species of the genus Roseomonas , for which the name Roseomonas algicola sp. nov. is proposed. The type strain is PeD5 T (=KACC 19925 T =JCM 33309 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2020
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 10
    Online Resource
    Online Resource
    Microbiology Society ; 2020
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 70, No. 4 ( 2020-04-01), p. 2254-2260
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 70, No. 4 ( 2020-04-01), p. 2254-2260
    Abstract: In the course of screening halophilic bacteria in Urmia Lake in Iran, which is being threatened by dryness, a novel Gram-negative, moderately halophilic, heterotrophic and short rod-shaped bacteria was isolated and characterized. The bacterium was isolated from a water specimen and designated as TBZ3 T . Colonies were found to be creamy yellow, with catalase- and oxidase-positive activities. The growth of strain TBZ3 T was observed to be at 10–45 °C (optimum, 30 °C), at pH 6.0–9.0 (optimum, pH 7.0) and in the presence of 0.5–20 % (w/v) NaCl (optimum, 7.5 %). Strain TBZ3 T contained C 16 : 0 , cyclo-C 19 : 0   ω8 c , summed feature 3 (comprising C 16 : 1  ω 7 c and/or C 16 : 1  ω 6 c ) and summed feature 8 (comprising C 18 : 1  ω 7 c and/or C 18 : 1  ω 6 c ) as major fatty acids and ubiquinone-9 as the only respiratory isoprenoid quinone. Diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, glycolipid, unidentified phospholipid and unidentified polar lipids were detected as the major polar lipids. Strain TBZ3 T was found to be most closely related to Halomonas saccharevitans AJ275 T , Halomonas denitrificans M29 T and Halomonas sediminicola CPS11 T with the 16S rRNA gene sequence similarities of 98.93, 98.15 and 97.60 % respectively and in phylogenetic analysis strain TBZ3 T grouped with Halomonas saccharevitans AJ275 T contained within a large cluster within the genus Halomonas . Based on phenotypic, chemotaxonomic and molecular properties, strain TBZ3 T represents a novel species of the Halomonas genus, for which the name Halomonas urmiana sp. nov. is proposed. The type strain is TBZ3 T (=DSM 22871 T =LMG 25416 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2020
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
    Location Call Number Limitation Availability
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