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  • 1
    In: Medical Mycology, Oxford University Press (OUP), Vol. 59, No. 5 ( 2021-05-04), p. 486-497
    Abstract: Scedosporiosis/lomentosporiosis is a devastating emerging fungal infection. Our objective was to describe the clinical pattern and to analyze whether taxonomic grouping of the species involved was supported by differences in terms of clinical presentations or outcomes. We retrospectively studied cases of invasive scedosporiosis in France from 2005 through 2017 based on isolates characterized by polyphasic approach. We recorded 90 cases, mainly related to Scedosporium apiospermum (n = 48), S. boydii/S. ellipsoideum (n = 20), and Lomentospora prolificans (n = 14). One-third of infections were disseminated, with unexpectedly high rates of cerebral (41%) and cardiovascular (31%) involvement. In light of recent Scedosporium taxonomic revisions, we aimed to study the clinical significance of Scedosporium species identification and report for the first time contrasting clinical presentations between infections caused S. apiospermum, which were associated with malignancies and cutaneous involvement in disseminated infections, and infections caused by S. boydii, which were associated with solid organ transplantation, cerebral infections, fungemia, and early death. The clinical presentation of L. prolificans also differed from that of other species, involving more neutropenic patients, breakthrough infections, fungemia, and disseminated infections. Neutropenia, dissemination, and lack of antifungal prescription were all associated with 3-month mortality. Our data support the distinction between S. apiospermum and S. boydii and between L. prolificans and Scedosporium sp. Our results also underline the importance of the workup to assess dissemination, including cardiovascular system and brain.
    Type of Medium: Online Resource
    ISSN: 1369-3786 , 1460-2709
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2021
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  • 2
    In: Pharmacogenomics, Future Medicine Ltd, Vol. 13, No. 4 ( 2012-03), p. 497-504
    Abstract: Aim: Tumor gene-expression profiling may define signatures capable of discriminating between responders and nonresponders to chemotherapy. Patients & methods: Fifty seven metastatic colorectal cancer patients were prospectively included and 40 tumors were analyzed. Patients were treated in first line with 5-fluorouracil associated with irinotecan or oxaliplatin. Response was evaluated using WHO criteria every 2 months after chemotherapy. Gene-expression profiling was performed using Applied Biosystems microarrays (Human Genome Survey Microarray v2.0; Paris, France). Data were analyzed using Bioconductor packages. Differential-expression analysis was performed by fitting a linear model. Moderated t-statistics were computed and p-values were adjusted for false-discovery rate. Pearson correlations tests were evaluated between gene expression and progression-free and overall survival. Results: Nonsupervised analysis did not show any clustering of expression levels according to treatment response. Supervised analysis compared expression levels between responders and nonresponders, within each treatment group and independently from treatment. No genes were identified as differentially expressed at a p-value of 10 -3 and false-discovery rate of 30%. No correlation between expression levels and survival data was found. Conclusion: These negative results show that the determinants of response to chemotherapy should be sought not only in the tumor characteristics, but also among the processes leading to drug availability to the tumor. Original submitted 7 July 2011; Revision submitted 17 October 2011
    Type of Medium: Online Resource
    ISSN: 1462-2416 , 1744-8042
    Language: English
    Publisher: Future Medicine Ltd
    Publication Date: 2012
    SSG: 15,3
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  • 3
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 71, No. 8_Supplement ( 2011-04-15), p. 2332-2332
    Abstract: FAM110B was first identified in a functional screen using genetic suppressor elements to identify new genes involved in the sensitivity to topoisomerase II poisons (Gros et al. Cancer Res, 2003 63: 164-71). FAM110B is extremely conserved in vertebrates. It shares strong sequence homologies with the two other members of this new family (FAM110A & C), but has no known functional domains. We generated a polyclonal antibody and showed that endogenous FAM110B had a MW of ≈40 kDa and was expressed in various cancer cell lines with a predominant cytoplasmic localization. To identify its biological function, we evaluate the different genes/pathways that it could modulate, using specific lentiviral shRNA to target FAM110B in HeLa cells. We found that transient downregulation of FAM110B induced a net decrease in cell proliferation and cell survival. It also induced a change in cell morphology which was accompanied by an increase in E-cadherin and a decrease in N-cadherin expression which are two markers of a reverse epithelial to mesenchymal (EMT) transition phenotype. We also measured the levels of SNAIL and SLUG protein levels, two known repressors of E-cadherin expression and found that only SLUG was decreased in shFAM110B-transfected cells, suggesting that regulation of E-cadherin expression by FAM110B involves, at least in part, its transcriptional repression by SLUG. Increased expression of E-cadherin was confirmed at the mRNA level by microarray analyses comparing control cells to shFAM110B-transfected cells. This analysis also revealed the presence of various genes involved in EMT among the 1000 most differentially expressed genes (adjusted t-value & gt; 7 or & lt; -7) such as Twist2, fibronectin 1, Collagen 1A1 & 4, MMP2, PAI-1, claudin1 & 4, integrin α4, Nestin, interleukin 8, MUC1, or MUC16. Our data were confirmed at the functional level by analyzing the effects of FAM110B repression on the motility/migratory behaviour of HeLa cells using the wound model. While cells expressing control shRNA were able to invade the wound within 7-10h, cells with reduced levels of FAM110B had barely started to move towards the wound. Similarly, shFAM110B-transfected cells displayed a 2-fold decrease in their capacity to invade and migrate through collagen gels as compared to control cells. Using the Cignal Finder Cancer 10-Pathway Reporter Assay, we assess whether other signalling pathways could be deregulated following FAM110B downregulation. We found that Wnt, TGF-β and the Notch pathways, which are all involved in EMT, were significantly downregulated in shFAM110B-transfected cells, which is in accordance with our previous observations. Together, our results provide new evidences on the potential role of FAM110B in the regulation of E-cadherin expression and more generally in crucial cellular processes such as cell motility, migration, invasion and metastasis which makes it a new potential target for cancer therapy. Citation Format: {Authors}. {Abstract title} [abstract]. In: Proceedings of the 102nd Annual Meeting of the American Association for Cancer Research; 2011 Apr 2-6; Orlando, FL. Philadelphia (PA): AACR; Cancer Res 2011;71(8 Suppl):Abstract nr 2332. doi:10.1158/1538-7445.AM2011-2332
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
    RVK:
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    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2011
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  • 4
    In: Visual Neuroscience, Cambridge University Press (CUP), Vol. 40 ( 2023)
    Abstract: Glaucoma is an eye disease characterized by a progressive vision loss usually starting in peripheral vision. However, a deficit for scene categorization is observed even in the preserved central vision of patients with glaucoma. We assessed the processing and integration of spatial frequencies in the central vision of patients with glaucoma during scene categorization, considering the severity of the disease, in comparison to age-matched controls. In the first session, participants had to categorize scenes filtered in low-spatial frequencies (LSFs) and high-spatial frequencies (HSFs) as a natural or an artificial scene. Results showed that the processing of spatial frequencies was impaired only for patients with severe glaucoma, in particular for HFS scenes. In the light of proactive models of visual perception, we investigated how LSF could guide the processing of HSF in a second session. We presented hybrid scenes (combining LSF and HSF from two scenes belonging to the same or different semantic category). Participants had to categorize the scene filtered in HSF while ignoring the scene filtered in LSF. Surprisingly, results showed that the semantic influence of LSF on HSF was greater for patients with early glaucoma than controls, and then disappeared for the severe cases. This study shows that a progressive destruction of retinal ganglion cells affects the spatial frequency processing in central vision. This deficit may, however, be compensated by increased reliance on predictive mechanisms at early stages of the disease which would however decline in more severe cases.
    Type of Medium: Online Resource
    ISSN: 0952-5238 , 1469-8714
    RVK:
    Language: English
    Publisher: Cambridge University Press (CUP)
    Publication Date: 2023
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  • 5
    In: Journal of Cognitive Neuroscience, MIT Press, Vol. 33, No. 5 ( 2021-04-01), p. 799-813
    Abstract: Theories of visual recognition postulate that our ability to understand our visual environment at a glance is based on the extraction of the gist of the visual scene, a first global and rudimentary visual representation. Gist perception would be based on the rapid analysis of low spatial frequencies in the visual signal and would allow a coarse categorization of the scene. We aimed to study whether the low spatial resolution information available in peripheral vision could modulate the processing of visual information presented in central vision. We combined behavioral measures (Experiments 1 and 2) and fMRI measures (Experiment 2). Participants categorized a scene presented in central vision (artificial vs. natural categories) while ignoring another scene, either semantically congruent or incongruent, presented in peripheral vision. The two scenes could either share the same physical properties (similar amplitude spectrum and spatial configuration) or not. Categorization of the central scene was impaired by a semantically incongruent peripheral scene, in particular when the two scenes were physically similar. This semantic interference effect was associated with increased activation of the inferior frontal gyrus. When the two scenes were semantically congruent, the dissimilarity of their physical properties impaired the categorization of the central scene. This effect was associated with increased activation in occipito-temporal areas. In line with the hypothesis of predictive mechanisms involved in visual recognition, results suggest that semantic and physical properties of the information coming from peripheral vision would be automatically used to generate predictions that guide the processing of signal in central vision.
    Type of Medium: Online Resource
    ISSN: 0898-929X , 1530-8898
    Language: English
    Publisher: MIT Press
    Publication Date: 2021
    SSG: 5,2
    SSG: 7,11
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  • 6
    Online Resource
    Online Resource
    Elsevier BV ; 2003
    In:  Biosystems Vol. 71, No. 1-2 ( 2003-9), p. 157-167
    In: Biosystems, Elsevier BV, Vol. 71, No. 1-2 ( 2003-9), p. 157-167
    Type of Medium: Online Resource
    ISSN: 0303-2647
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2003
    detail.hit.zdb_id: 1496359-0
    SSG: 12
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  • 7
    In: Nature Communications, Springer Science and Business Media LLC, Vol. 10, No. 1 ( 2019-08-20)
    Abstract: Transcription factor networks shape the gene expression programs responsible for normal cell identity and pathogenic state. Using Core Regulatory Circuitry analysis (CRC), we identify PAX8 as a candidate oncogene in Renal Cell Carcinoma (RCC) cells. Validation of large-scale functional genomic screens confirms that PAX8 silencing leads to decreased proliferation of RCC cell lines. Epigenomic analyses of PAX8-dependent cistrome demonstrate that PAX8 largely occupies active enhancer elements controlling genes involved in various metabolic pathways. We selected the ferroxidase Ceruloplasmin (CP) as an exemplary gene to dissect PAX8 molecular functions. PAX8 recruits histone acetylation activity at bound enhancers looping onto the CP promoter. Importantly, CP expression correlates with sensitivity to PAX8 silencing and identifies a subset of RCC cases with poor survival. Our data identifies PAX8 as a candidate oncogene in RCC and provides a potential biomarker to monitor its activity.
    Type of Medium: Online Resource
    ISSN: 2041-1723
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2019
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  • 8
    Online Resource
    Online Resource
    Association for Research in Vision and Ophthalmology (ARVO) ; 2019
    In:  Journal of Vision Vol. 19, No. 14 ( 2019-12-12), p. 7-
    In: Journal of Vision, Association for Research in Vision and Ophthalmology (ARVO), Vol. 19, No. 14 ( 2019-12-12), p. 7-
    Type of Medium: Online Resource
    ISSN: 1534-7362
    Language: English
    Publisher: Association for Research in Vision and Ophthalmology (ARVO)
    Publication Date: 2019
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  • 9
    In: Cancer Discovery, American Association for Cancer Research (AACR), Vol. 2, No. 12 ( 2012-12-01), p. 1118-1133
    Abstract: Patient stratification biomarkers that enable the translation of cancer genetic knowledge into clinical use are essential for the successful and rapid development of emerging targeted anticancer therapeutics. Here, we describe the identification of patient stratification biomarkers for NVP-BGJ398, a novel and selective fibroblast growth factor receptor (FGFR) inhibitor. By intersecting genome-wide gene expression and genomic alteration data with cell line–sensitivity data across an annotated collection of cancer cell lines called the Cancer Cell Line Encyclopedia, we show that genetic alterations for FGFR family members predict for sensitivity to NVP-BGJ398. For the first time, we report oncogenic FGFR1 amplification in osteosarcoma as a potential patient selection biomarker. Furthermore, we show that cancer cell lines harboring FGF19 copy number gain at the 11q13 amplicon are sensitive to NVP-BGJ398 only when concomitant expression of β-klotho occurs. Thus, our findings provide the rationale for the clinical development of FGFR inhibitors in selected patients with cancer harboring tumors with the identified predictors of sensitivity. Significance: The success of a personalized medicine approach using targeted therapies ultimately depends on being able to identify the patients who will benefit the most from any given drug. To this end, we have integrated the molecular profiles for more than 500 cancer cell lines with sensitivity data for the novel anticancer drug NVP-BGJ398 and showed that FGFR genetic alterations are the most significant predictors for sensitivity. This work has ultimately endorsed the incorporation of specific patient selection biomakers in the clinical trials for NVP-BGJ398. Cancer Discov; 2(12); 1118–33. ©2012 AACR. Read the Commentary on this article by Loch and Pollock, p. 1081 This article is highlighted in the In This Issue feature, p. 1065
    Type of Medium: Online Resource
    ISSN: 2159-8274 , 2159-8290
    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2012
    detail.hit.zdb_id: 2607892-2
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  • 10
    In: Revue de neuropsychologie, John Libbey Eurotext, Vol. Volume 11, No. 1 ( 2019-4-4), p. 44-59
    Type of Medium: Online Resource
    ISSN: 2101-6739
    Language: French
    Publisher: John Libbey Eurotext
    Publication Date: 2019
    SSG: 5,2
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