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  • 1
    Online Resource
    Online Resource
    A report of 31 unrecorded bacterial species in South Korea belonging to the class Gammaproteobacteria
    The National Institute of Biological Resources ; 2016
    In:  Journal of Species Research Vol. 5, No. 1 ( 2016-02-29), p. 188-200
    Details
    In: Journal of Species Research, The National Institute of Biological Resources, Vol. 5, No. 1 ( 2016-02-29), p. 188-200
    Type of Medium: Online Resource
    ISSN: 2234-7909
    URL: Article
    DOI: 10.12651/JSR.2016.5.1.188
    Language: English
    Publisher: The National Institute of Biological Resources
    Publication Date: 2016
    detail.hit.zdb_id: 2743289-0
    SSG: 12
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  • 2
    Online Resource
    Online Resource
    Marivita hallyeonensis sp. nov., isolated from seawater, reclassification of Gaetbulicola byunsanensis as Marivita byunsanensis comb. nov. and emended description of the genus Marivita Hwang et al. 2009
    Microbiology Society ; 2012
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 62, No. Pt_4 ( 2012-04-01), p. 839-843
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 62, No. Pt_4 ( 2012-04-01), p. 839-843
    Abstract: A Gram-stain-negative, non-motile, non-spore-forming, aerobic, rod-shaped bacterial strain, designated DPG-28 T , was isolated from seawater on the southern coast of Korea. Strain DPG-28 T grew optimally at 30 °C and in the presence of 2 % (w/v) NaCl. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain DPG-28 T formed a coherent cluster with members of the genera Marivita and Gaetbulicola , with which it exhibited sequence similarity values of 97.8–98.5 %. The DNA G+C content of strain DPG-28 T was 65.1 mol%. The predominant ubiquinone of strain DPG-28 T was ubiquinone-10 (Q-10), consistent with data for the genera Marivita and Gaetbulicola . The cellular fatty acid profiles of strain DPG-28 T and the type strains of Marivita cryptomonadis , Marivita litorea and Gaetbulicola byunsanensis were essentially similar in that the common predominant fatty acid was C 18 : 1 ω7 c . Major polar lipids found in strain DPG-28 T and the type strains of M. cryptomonadis , M. litorea and G. byunsanensis were phosphatidylcholine, phosphatidylglycerol, phosphatidylethanolamine and an unidentified aminolipid. From these data, it is proposed that Gaetbulicola byunsanensis be reclassified as a member of the genus Marivita , for which the name Marivita byunsanensis comb. nov. is proposed, with the type strain SMK-114 T ( = CCUG 57612 T  = KCTC 22632 T ), and that strain DPG-28 T be classified in the genus Marivita . Differential phenotypic properties and genetic distinctiveness of strain DPG-28 T demonstrated that this strain is distinguishable from M. cryptomonadis , M. litorea and G. byunsanensis . On the basis of the data presented, strain DPG-28 T is considered to represent a novel species of the genus Marivita , for which the name Marivita hallyeonensis sp. nov. is proposed. The type strain is DPG-28 T ( = KCTC 23421 T  = CCUG 60522 T ). An emended description of the genus Marivita is also provided.
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.032086-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2012
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 3
    Online Resource
    Online Resource
    Laparoscopic myomectomy: Presurgical classification to evaluate the validity of laparoscopic surgical treatment
    Korean Society of Obstetrics and Gynecology ; 2012
    In:  Korean Journal of Obstetrics & Gynecology Vol. 55, No. 3 ( 2012), p. 172-
    Details
    In: Korean Journal of Obstetrics & Gynecology, Korean Society of Obstetrics and Gynecology, Vol. 55, No. 3 ( 2012), p. 172-
    Type of Medium: Online Resource
    ISSN: 2233-5188 , 2233-5196
    URL: Article
    DOI: 10.5468/KJOG.2012.55.3.172
    Language: Korean
    Publisher: Korean Society of Obstetrics and Gynecology
    Publication Date: 2012
    detail.hit.zdb_id: 2814367-X
    detail.hit.zdb_id: 2873394-0
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  • 4
    Online Resource
    Online Resource
    Salegentibacter salarius sp. nov., isolated from a marine solar saltern
    Microbiology Society ; 2007
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 57, No. 12 ( 2007-12-01), p. 2738-2742
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 57, No. 12 ( 2007-12-01), p. 2738-2742
    Abstract: A Gram-negative, non-motile, rod-shaped bacterium, strain ISL-6 T , phenotypically resembling members of the genus Salegentibacter , was isolated from a marine solar saltern of the Yellow Sea in Korea and subjected to a polyphasic taxonomic investigation. Strain ISL-6 T grew optimally at pH 7.0–8.0 and 30 °C and in the presence of 8 % (w/v) NaCl. It contained MK-6 as the predominant menaquinone. The major fatty acids were iso-C 15 : 0 and anteiso-C 15 : 0 . The DNA G+C content was 37.5 mol%. A phylogenetic analysis based on 16S rRNA gene sequences showed that strain ISL-6 T belonged to the genus Salegentibacter . Strain ISL-6 T exhibited 16S rRNA gene sequence similarity values of 92.0–98.6 % with respect to the type strains of recognized Salegentibacter species. Low DNA–DNA relatedness values, differential phenotypic properties and phylogenetic distinctiveness demonstrated that strain ISL-6 T is distinguishable from the recognized Salegentibacter species. Therefore strain ISL-6 T represents a novel species of the genus Salegentibacter , for which the name Salegentibacter salarius sp. nov. is proposed. The type strain is ISL-6 T (=KCTC 12974 T =CCUG 54355 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.65253-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2007
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 5
    Online Resource
    Online Resource
    Mucilaginibacter lutimaris sp. nov., isolated from a tidal flat sediment
    Microbiology Society ; 2012
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 62, No. Pt_3 ( 2012-03-01), p. 515-519
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 62, No. Pt_3 ( 2012-03-01), p. 515-519
    Abstract: A Gram-staining-negative, non-spore-forming, facultatively aerobic, non-motile, rod-shaped bacterial strain, BR-3 T , was isolated from a tidal flat on the western coast of Korea, and subjected to a polyphasic study. Strain BR-3 T grew optimally at 25 °C, at pH 6.5–7.0 and in the absence of NaCl. Phylogenetic analyses based on 16S rRNA gene sequences revealed that strain BR-3 T fell within the clade comprising species of the genus Mucilaginibacter , joining the type strain of Mucilaginibacter rigui , with which it exhibited highest 16S rRNA gene sequence similarity (98.2 %). 16S rRNA gene sequence similarity values between strain BR-3 T and the type strains of the other species of the genus Mucilaginibacter were in the range 93.8–95.9 %. A mean DNA–DNA relatedness value between strain BR-3 T and M . rigui KCTC 12534 T was 21 %. Strain BR-3 T contained MK-7 as the predominant menaquinone and C 16 : 1 ω7 c and/or iso-C 15 : 0 2-OH and iso-C 15 : 0 as the major fatty acids. The major polar lipids were phosphatidylethanolamine and an unidentified aminophospholipid. The DNA G+C content was 49.8 mol%. Differential phenotypic properties and phylogenetic and genetic distinctiveness of strain BR-3 T demonstrated that this strain is separate from M . rigui as well as the other species of the genus Mucilaginibacter . On the basis of the data presented, strain BR-3 T is considered to represent a novel species of the genus Mucilaginibacter , for which the name Mucilaginibacter lutimaris sp. nov. is proposed. The type strain is BR-3 T ( = KCTC 23461 T  = CCUG 60742 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.030213-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2012
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 6
    Online Resource
    Online Resource
    Litorisediminicola beolgyonensis gen. nov., sp. nov., isolated from a coastal sediment
    Microbiology Society ; 2013
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 63, No. Pt_6 ( 2013-06-01), p. 2025-2031
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 63, No. Pt_6 ( 2013-06-01), p. 2025-2031
    Abstract: A Gram-negative, non-spore-forming, aerobic, non-flagellated and rod- or oval-shaped bacterial strain, BB-MW24 T , was isolated from a coastal sediment in South Korea. Strain BB-MW24 T grew optimally at 30–37 °C, at pH 7.0–7.5 and in the presence of 2.0–3.0 % (w/v) NaCl. A neighbour-joining phylogenetic tree based on 16S rRNA gene sequences revealed that strain BB-MW24 T clustered with Ponticoccus litoralis CL-GR66 T and Roseivivax lentus S5-5 T , with which it exhibited 96.0 and 96.2 % 16S rRNA gene sequence similarity, respectively. Strain BB-MW24 T exhibited 85.2 % gyrB sequence similarity with Sagittula stellata DSM 11524 T and 83.3 and 83.2 % gyrB sequence similarity with P. litoralis DSM 18986 T and R. lentus S5-5 T , respectively. Strain BB-MW24 T contained Q-10 as the predominant ubiquinone and C 18 : 1 ω7 c as the predominant fatty acid. The polar lipid profile in strain BB-MW24 T was similar to those of members of the genera Ponticoccus and Roseivivax , but one unidentified phospholipid was found as a major polar lipid only in strain BB-MW24 T . The DNA G+C content was 68.9 mol%. The phylogenetic data and differential chemotaxonomic and phenotypic properties revealed that strain BB-MW24 T represents a novel species in a new genus within the class Alphaproteobacteria , for which the name Litorisediminicola beolgyonensis gen. nov., sp. nov. is proposed; the type strain of Litorisediminicola beolgyonensis is BB-MW24 T ( = KCTC 32139 T  = CCUG 62953 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.043588-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2013
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 7
    Online Resource
    Online Resource
    Hwangdonia seohaensis gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from a tidal flat sediment
    Microbiology Society ; 2013
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 63, No. Pt_9 ( 2013-09-01), p. 3186-3191
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 63, No. Pt_9 ( 2013-09-01), p. 3186-3191
    Abstract: A Gram-staining-negative, aerobic, non-flagellated, non-gliding and rod-shaped bacterial strain, HD-3 T , was isolated from a tidal flat sediment of Hwangdo in the Yellow Sea, South Korea. Strain HD-3 T grew optimally at pH 7.0–8.0, at 30 °C and in the presence of 2–3 % (w/v) NaCl. Phylogenetic trees based on 16S rRNA gene sequences revealed that strain HD-3 T joined the cluster comprising the type strains of Jejuia pallidilutea and Hyunsoonleella jejuensis . Strain HD-3 T exhibited 16S rRNA gene sequence similarity values of 93.8 % to each of the type strains of J. pallidilutea and Hyunsoonleella jejuensis . Strain HD-3 T contained MK-6 as the only menaquinone and iso-C 15 : 0 , iso-C 15 : 1 G, iso-C 17 : 0 3-OH and iso-C 15 : 0 3-OH as the major fatty acids. The polar lipid profile of strain HD-3 T , which contained phosphatidylethanolamine and one unidentified lipid as major components and one unidentified phospholipid as a significant component, differed slightly from those of the type strains of J. pallidilutea and Hyunsoonleella jejuensis . The DNA G+C content of strain HD-3 T was 42.3 mol%. Differential phenotypic and chemotaxonomic properties and phylogenetic data of strain HD-3 T demonstrated that this strain is distinguishable from J. pallidilutea and Hyunsoonleella jejuensis . On the basis of the data presented, strain HD-3 T is considered to represent a novel genus and species, for which the name Hwangdonia seohaensis gen. nov., sp. nov. is proposed. The type strain is HD-3 T ( = KCTC 32177 T  = CCUG 63246 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.048744-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2013
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 8
    Online Resource
    Online Resource
    Paraperlucidibaca wandonensis sp. nov., isolated from seawater, and emended description of the genus Paraperlucidibaca Oh et al. 2011
    Microbiology Society ; 2013
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 63, No. Pt_11 ( 2013-11-01), p. 4113-4117
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 63, No. Pt_11 ( 2013-11-01), p. 4113-4117
    Abstract: A Gram-stain-negative, aerobic, motile and rod-shaped bacterial strain, designated WT-RY4 T , was isolated from wood falls in the South Sea, South Korea, and its taxonomic position was investigated using a polyphasic approach. Strain WT-RY4 T grew optimally at 25 °C, at pH 7.0–7.5 and in the absence of NaCl. A neighbour-joining phylogenetic tree based on 16S rRNA gene sequences showed that strain WT-RY4 T clustered with the type strain of Paraperlucidibaca baekdonensis with a bootstrap resampling value of 100 %. Strain WT-RY4 T exhibited 16S rRNA gene sequence similarity values of 98.8 % and 96.3 % to Paraperlucidibaca baekdonensis RL-2 T and Perlucidibaca piscinae IMCC 1704 T , respectively and less than 91.5 % to the type strains of other species used in the phylogenetic analysis. The DNA G+C content of strain WT-RY4 T was 52.4 mol% and the mean DNA–DNA relatedness value with Paraperlucidibaca baekdonensis RL-2 T was 25 %. Strain WT-RY4 T contained Q-11 as the predominant ubiquinone and summed feature 3 (C 16 : 1 ω7 c and/or C 16 : 1 ω6 c ), C 16 : 0 and C 12 : 0 3-OH as the major fatty acids. Differential phenotypic properties, together with the phylogenetic and genetic distinctiveness, demonstrated that strain WT-RY4 T was distinguishable from Paraperlucidibaca baekdonensis RL-2 T . On the basis of the data presented, strain WT-RY4 T is considered to represent a novel species of the genus Paraperlucidibaca , for which the name Paraperlucidibaca wandonensis sp. nov. is proposed. The type strain is WT-RY4 T ( = KCTC 32216 T  = CCUG 63419 T ). An emended description of the genus Paraperlucidibaca is also provided.
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.048645-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2013
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 9
    Online Resource
    Online Resource
    Paracoccus lutimaris sp. nov., isolated from a tidal flat sediment
    Microbiology Society ; 2014
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 64, No. Pt_8 ( 2014-08-01), p. 2763-2769
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 64, No. Pt_8 ( 2014-08-01), p. 2763-2769
    Abstract: A Gram-negative, coccoid or oval-shaped and gliding bacterial strain, designated HDM-25 T , belonging to the Alphaproteobacteria , was isolated from a tidal flat sediment of the Yellow Sea, Korea, and was subjected to a polyphasic taxonomic study. Strain HDM-25 T grew optimally at pH 7.0–8.0, at 30 °C and in the presence of 2–3 % (w/v) NaCl. Neighbour-joining, maximum-likelihood and maximum-parsimony phylogenetic trees based on 16S rRNA gene sequences showed that strain HDM-25 T fell within the clade comprising the species of the genus Paracoccus , clustering with the type strain of Paracoccus aminophilus , with which it exhibited the highest 16S rRNA gene sequence similarity (97.7 %). The 16S rRNA gene sequence similarity between strain HDM-25 T and the type strains of the other species of Paracoccus was 93.6–97.0 %. The DNA G+C content was 65.9 mol% and the mean DNA–DNA relatedness between strain HDM-25 T and the type strain of P. aminophilus was 10.7±2.7 % (9.9±4.0 %, reciprocal analysis). Strain HDM-25 T contained Q-10 as the predominant ubiquinone and summed feature 8 (C 18 : 1 ω7 c and/or C 18 : 1 ω6 c ) and C 16 : 0 as the major fatty acids. The major polar lipids were phosphatidylcholine, phosphatidylglycerol, diphosphatidylglycerol, an unidentified aminolipid, an unidentified glycolipid and an unidentified lipid. Differential phenotypic properties, together with the phylogenetic and genetic distinctiveness, demonstrated that strain HDM-25 T is distinguishable from other species of the genus Paracoccus . On the basis of the data presented, strain HDM-25 T is considered to represent a novel species of the genus Paracoccus , for which the name Paracoccus lutimaris sp. nov. is proposed. The type strain is HDM-25 T ( = KCTC 42007 T  = CECT 8525 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.064865-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2014
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 10
    Online Resource
    Online Resource
    Demequina activiva sp. nov., isolated from a tidal flat
    Microbiology Society ; 2015
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 65, No. Pt_7 ( 2015-07-01), p. 2042-2047
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 65, No. Pt_7 ( 2015-07-01), p. 2042-2047
    Abstract: A Gram-stain-positive, facultatively anaerobic, non-spore-forming, non-flagellated and rod-shaped or ovoid bacterial strain, designated BS-12M T , was isolated from a tidal flat sediment on the South Sea, South Korea. Strain BS-12M T grew optimally at 35 °C, at pH 7.0–8.0 and in the presence of 2.0 % (w/v) NaCl. The neighbour-joining phylogenetic tree based on 16S rRNA gene sequences revealed that strain BS-12M T fell within the cluster comprising the type strains of species of the genus Demequina , joining the type strain of Demequina aestuarii with which it shared the highest sequence similarity (98.6 %). It exhibited 16S rRNA gene sequence similarity of 96.1–97.9 % to the type strains of other species of the genus Demequina . The peptidoglycan type of strain BS-12M T was A4β based on l -Orn −  l -Ser −  d -Glu. Strain BS-12M T contained demethylmenaquinone-9(H 4 ) as the major menaquinone and anteiso-C 15:0 and C 16:0 as the major fatty acids. The major polar lipids of strain BS-12M T were phosphatidylinositol and phosphatidylinositolmannoside. The DNA G+C content of strain BS-12M T was 70.7 mol% and its DNA–DNA relatedness values with the type strains of five phylogenetically related species of the genus Demequina were 15–34 %. Differential phenotypic properties, together with phylogenetic and genetic distinctiveness, revealed that strain BS-12M T is separate from other species of the genus Demequina . On the basis of the data presented, strain BS-12M T is considered to represent a novel species of the genus Demequina , for which the name Demequina activiva sp. nov. is proposed. The type strain is BS-12M T ( = KCTC 29674 T  = NBRC 110675 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.000217
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2015
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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