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  • 1
    In: FEMS Microbiology Ecology, Oxford University Press (OUP), Vol. 40, No. 1 ( 2002-04), p. 83-84
    Type of Medium: Online Resource
    ISSN: 0168-6496 , 1574-6941
    URL: Issue
    RVK:
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2002
    detail.hit.zdb_id: 1501712-6
    SSG: 12
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  • 2
    Online Resource
    Online Resource
    EDP Sciences ; 2007
    In:  Environmental Biosafety Research Vol. 6, No. 1-2 ( 2007-01), p. 15-35
    In: Environmental Biosafety Research, EDP Sciences, Vol. 6, No. 1-2 ( 2007-01), p. 15-35
    Type of Medium: Online Resource
    ISSN: 1635-7922 , 1635-7930
    Language: English
    Publisher: EDP Sciences
    Publication Date: 2007
    detail.hit.zdb_id: 2092924-9
    SSG: 21
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  • 3
    Online Resource
    Online Resource
    American Society for Microbiology ; 1994
    In:  Applied and Environmental Microbiology Vol. 60, No. 7 ( 1994-07), p. 2238-2247
    In: Applied and Environmental Microbiology, American Society for Microbiology, Vol. 60, No. 7 ( 1994-07), p. 2238-2247
    Abstract: A thymidine incorporation technique was used to determine the tolerance of a soil bacterial community to Cu, Cd, Zn, Ni, and Pb. An agricultural soil was artificially contaminated in our laboratory with individual metals at three different concentrations, and the results were compared with the results obtained by using the plate count technique. Thymidine incorporation was found to be a simple and rapid method for measuring tolerance. Data obtained by this technique were very reproducible. A linear relationship was found between changes in community tolerance levels obtained by the thymidine incorporation and plate count techniques ( r = 0.732, P 〈 0.001). An increase in tolerance to the metal added to soil was observed for the bacterial community obtained from each polluted soil compared with the community obtained from unpolluted soil. The only exception was when Pb was added; no indication of Pb tolerance was found. An increase in the tolerance to metals other than the metal originally added to soil was also observed, indicating that there was multiple heavy metal tolerance at the community level. Thus, Cu pollution, in addition to increasing tolerance to Cu, also induced tolerance to Zn, Cd, and Ni. Zn and Cd pollution increased community tolerance to all five metals. Ni amendment increased tolerance to Ni the most but also increased community tolerance to Zn and, to lesser degrees, increased community tolerance to Pb and Cd. In soils polluted with Pb increased tolerance to other metals was found in the following order: Ni 〉 Cd 〉 Zn 〉 Cu. We found significant positive relationships between changes in Cd, Zn, and Pb tolerance and, to a lesser degree, between changes in Pb and Ni tolerance when all metals and amendment levels were compared. The magnitude of the increase in heavy metal tolerance was found to be linearly related to the logarithm of the metal concentration added to the soil. Threshold tolerance concentrations were estimated from these linear relationships, and changes in tolerance could be detected at levels of soil contamination similar to those reported previously to result in changes in the phospholipid fatty acid pattern (Å. Frostegård, A. Tunlid, and E. Bååth, Appl. Environ. Microbiol. 59: 3605-3617, 1993).
    Type of Medium: Online Resource
    ISSN: 0099-2240 , 1098-5336
    RVK:
    Language: English
    Publisher: American Society for Microbiology
    Publication Date: 1994
    detail.hit.zdb_id: 223011-2
    detail.hit.zdb_id: 1478346-0
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  • 4
    In: Environmental Microbiology, Wiley, Vol. 16, No. 10 ( 2014-10), p. 3196-3210
    Abstract: Several G ram‐positive bacteria carry genes for anaerobic reduction of NO 3 − via NO 2 − to NH 4 + or gaseous nitrogen compounds, but the processes are understudied for these organisms. Here, we present results from a whole‐genome analysis of the soil bacterium B acillus vireti and a phenotypic characterization of intermediate and end‐products, formed under anoxic conditions in the presence of NO 3 − . B acillus vireti has a versatile metabolism. It produces acetate, formate, succinate and lactate from fermentation and performs dissimilatory nitrate reduction via NO 2 − to ammonium ( DNRA ) using NrfA , while NirB may detoxify NO 2 − in the cytoplasm. Moreover, it produces NO from an unknown source and reduces it via N 2 O to N 2 using two enzymes connected to denitrification: an unusual NO reductase, qCu A Nor encoded by cbaA , and a z‐type N 2 O reductase, encoded by nosZ . In batch cultures, B . vireti reduced all NO 3 − to NO 2 − before the NO 2 − was reduced further. The quantities of all products varied with the initial NO 3 − concentration. With 5 m M NO 3 − , 90% was reduced to NH 4 + while with ≥ 20 m M NO 3 − , 50% was reduced to NO , N 2 O and N 2 . This organism is thus an aggressive NO 2 − accumulator and may act as a net source and sink of NO and N 2 O .
    Type of Medium: Online Resource
    ISSN: 1462-2912 , 1462-2920
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2014
    detail.hit.zdb_id: 2020213-1
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  • 5
    Online Resource
    Online Resource
    Wiley ; 2020
    In:  Environmental Microbiology Vol. 22, No. 1 ( 2020-01), p. 17-31
    In: Environmental Microbiology, Wiley, Vol. 22, No. 1 ( 2020-01), p. 17-31
    Abstract: Bradyrhizobia are abundant soil bacteria, which can form nitrogen‐fixing symbioses with leguminous plants, including important crops such as soybean, cowpea and peanut. Many bradyrhizobia can denitrify, but studies have hitherto focused on a few model organisms. We screened 39 diverse Bradyrhizobium strains, isolated from legume nodules. Half of them were unable to reduce N 2 O, making them sources of this greenhouse gas. Most others could denitrify NO 3 − to N 2 . Time‐resolved gas kinetics and transcription analyses during transition to anaerobic respiration revealed a common regulation of nirK , norCB and nosZ (encoding NO 2 − , NO and N 2 O reductases), and differing regulation of napAB (encoding periplasmic NO 3 − reductase). A prominent feature in all N 2 ‐producing strains was a virtually complete hampering of NO 3 − reduction in the presence of N 2 O. In‐depth analyses suggest that this was due to a competition between electron transport pathways, strongly favouring N 2 O over NO 3 − reduction. In a natural context, bacteria with this feature would preferentially reduce available N 2 O, produced by themselves or other soil bacteria, making them powerful sinks for this greenhouse gas. One way to augment such populations in agricultural soils is to develop inoculants for legume crops with dual capabilities of efficient N 2 ‐fixation and efficient N 2 O reduction.
    Type of Medium: Online Resource
    ISSN: 1462-2912 , 1462-2920
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2020
    detail.hit.zdb_id: 2020213-1
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  • 6
    In: Environmental Microbiology, Wiley, Vol. 19, No. 12 ( 2017-12), p. 4882-4896
    Abstract: Ammonia oxidising bacteria (AOB) are thought to emit more nitrous oxide (N 2 O) than ammonia oxidising archaea (AOA), due to their higher N 2 O yield under oxic conditions and denitrification in response to oxygen (O 2 ) limitation. We determined the kinetics of growth and turnover of nitric oxide (NO) and N 2 O at low cell densities of Nitrosomonas europaea (AOB) and Nitrosopumilus maritimus (AOA) during gradual depletion of TAN (NH 3  +  ) and O 2 . Half‐saturation constants for O 2 and TAN were similar to those determined by others, except for the half‐saturation constant for ammonium in N. maritimus (0.2 mM), which is orders of magnitudes higher than previously reported. For both strains, cell‐specific rates of NO turnover and N 2 O production reached maxima near O 2 half‐saturation constant concentration (2–10 μM O 2 ) and decreased to zero in response to complete O 2 ‐depletion. Modelling of the electron flow in N. europaea demonstrated low electron flow to denitrification (≤1.2% of the total electron flow), even at sub‐micromolar O 2 concentrations. The results corroborate current understanding of the role of NO in the metabolism of AOA and suggest that denitrification is inconsequential for the energy metabolism of AOB, but possibly important as a route for dissipation of electrons at high ammonium concentration.
    Type of Medium: Online Resource
    ISSN: 1462-2912 , 1462-2920
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2017
    detail.hit.zdb_id: 2020213-1
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  • 7
    In: Water Research, Elsevier BV, Vol. 151 ( 2019-03), p. 381-387
    Type of Medium: Online Resource
    ISSN: 0043-1354
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2019
    detail.hit.zdb_id: 202613-2
    detail.hit.zdb_id: 1501098-3
    SSG: 14
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  • 8
    Online Resource
    Online Resource
    Canadian Science Publishing ; 2008
    In:  Canadian Journal of Forest Research Vol. 38, No. 6 ( 2008-06), p. 1504-1516
    In: Canadian Journal of Forest Research, Canadian Science Publishing, Vol. 38, No. 6 ( 2008-06), p. 1504-1516
    Abstract: We investigated soil microbial community structure by phospholipid fatty acid (PLFA) analysis in a mature boreal spruce forest landscape in southern Norway, with low diversity of vascular plants. We investigated the spatial variation in PLFAs and the importance of environmental variables in 10 plots (each 13 samples) in a study area of 1 km × 1 km. The scales investigated were 15 cm to 10 m within study plots and 100 m to 1 km between study plots. Soil microbial biomass varied 10-fold and we found a large variation in microbial community structure, even at distances of 15 cm. Samples aggregated into plots when PLFAs were subjected to a principal components analysis. Plot identity explained 36.3% of the variation in the PLFAs and geostatistical analysis showed that the microbial community structure displayed spatial dependence at within-plot distances. Environmental variables differed significantly between all plots but explained only minor parts of the variation in the overall PLFA pattern. The vegetation variables were, however, the best at explaining the PLFA pattern, and up to 60% of within-plot variation in individual plots, respectively, could be explained by vegetation variables, pH, and soil depth.
    Type of Medium: Online Resource
    ISSN: 0045-5067 , 1208-6037
    Language: English
    Publisher: Canadian Science Publishing
    Publication Date: 2008
    detail.hit.zdb_id: 1473096-0
    SSG: 23
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  • 9
    Online Resource
    Online Resource
    Portland Press Ltd. ; 2021
    In:  Biochemical Society Transactions Vol. 49, No. 1 ( 2021-02-26), p. 495-505
    In: Biochemical Society Transactions, Portland Press Ltd., Vol. 49, No. 1 ( 2021-02-26), p. 495-505
    Abstract: The interaction between rhizobia and their legume host plants conduces to the formation of specialized root organs called nodules where rhizobia differentiate into bacteroids which fix atmospheric nitrogen to the benefit of the plant. This beneficial symbiosis is of importance in the context of sustainable agriculture as legumes do not require the addition of nitrogen fertilizer to grow. Interestingly, nitric oxide (NO) has been detected at various steps of the rhizobium–legume symbiosis where it has been shown to play multifaceted roles. Both bacterial and plant partners are involved in NO synthesis in nodules. To better understand the role of NO, and in particular the role of bacterial NO, at all steps of rhizobia–legumes interaction, the enzymatic sources of NO have to be elucidated. In this review, we discuss different enzymatic reactions by which rhizobia may potentially produce NO. We argue that there is most probably no NO synthase activity in rhizobia, and that instead the NO2− reductase nirK, which is part of the denitrification pathway, is the main bacterial source of NO. The nitrate assimilation pathway might contribute to NO production but only when denitrification is active. The different approaches to measure NO in rhizobia are also addressed.
    Type of Medium: Online Resource
    ISSN: 0300-5127 , 1470-8752
    Language: English
    Publisher: Portland Press Ltd.
    Publication Date: 2021
    SSG: 12
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  • 10
    In: Environmental Microbiology, Wiley, Vol. 10, No. 11 ( 2008-11), p. 3070-3081
    Abstract: The ability of Agrobacetrium tumefaciens to perform balanced transitions from aerobic to anaerobic respiration was studied by monitoring oxygen depletion, transcription of nirK and norB , and the concentrations of nitrite, nitric oxide (NO) and nitrous oxide in stirred batch cultures with different initial oxygen, nitrate or nitrite concentrations. Nitrate concentrations (0.2–2 mM) did not affect oxygen depletion, nor the oxygen concentration at which denitrification was initiated (1–2 μM). Nitrite (0.2–2 mM), on the other hand, retarded the oxygen depletion as it reached ≈20 μM, and caused initiation of active denitrification as oxygen concentrations reached 10–17 μM. Unbalanced transitions occurred in treatments with high cell densities (i.e. with rapid transition from oxic to anoxic conditions), seen as NO accumulation to μM concentrations and impeded nitrous oxide production. This phenomenon was most severe in nitrite treatments, and reduced the cells' ability to respire oxygen during subsequent oxic conditions. Transcripts of norB were only detectable during the period with active denitrification. In contrast, nirK transcripts were detected at low levels both before and after this period. The results demonstrate that the transition from aerobic to anaerobic metabolism is a regulatory challenge, with implications for survival and emission of trace gases from denitrifying bacteria.
    Type of Medium: Online Resource
    ISSN: 1462-2912 , 1462-2920
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2008
    detail.hit.zdb_id: 2020213-1
    SSG: 12
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