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  • 1
    In: Agriculture, MDPI AG, Vol. 11, No. 12 ( 2021-12-03), p. 1224-
    Abstract: Chinese goldthread (Coptis chinensis Franch.) represents one of the most important medicinal plants with diverse medicinal applications, but it easily suffers from continuous cropping obstacles in the plantation. In this study, we have selected eight different continuously cropped fields with C. chinensis and fallow field, providing detailed information regarding the diversity and composition of the rhizospheric bacterial communities. We have found a significant difference between fallow field (LH) and other continuously cropped fields in soil pH; the total content of nitrogen, phosphorus, and potassium; and soil enzyme activities. The results indicate that continuous cropping had a significant effect on soil physicochemical properties and enzyme activities under different plant cultivations. The relative abundance of bacterial phyla was significantly altered among the fields; for example, proteobacteria and Actinobacteria were observed to be higher in continuous cropping of maize (HY6) and lower in sweet potato continuous cropping (HH). Alpha diversity analysis showed that different plants with different years of continuous cropping could change the diversity of bacterial communities, among which the effect of maize and Polygonum multiflorum continuous cropping were most significant. Principle coordinate analysis (PCoA) showed that continuously cropped C. chinensis (LZ) and cabbage continuously cropped for 2 years (HS) were slightly clustered together and separated from LH and others. The results showed that the similarity of the bacterial community in the same crop rotation was higher, which further indicated that the bacterial community structure was significantly altered by the continuous cropping system and plant species. Our study provides a foundation for future agricultural research to improve microbial activity and increase crops/cash-crops productivity under a continuous cropping system and mitigate continuous cropping obstacles.
    Type of Medium: Online Resource
    ISSN: 2077-0472
    Language: English
    Publisher: MDPI AG
    Publication Date: 2021
    detail.hit.zdb_id: 2651678-0
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  • 2
    In: Agronomy, MDPI AG, Vol. 13, No. 7 ( 2023-07-10), p. 1827-
    Abstract: Plant species and cropping systems influence rhizospheric fungal communities’ composition, diversity, and structure. The fungus community is one of the main factors behind soil health and quality. Yet, there is insufficient evidence and research on the effect of plant species with continuous cropping histories on the rhizospheric fungal community. In order to investigate how the fungal community responds to the various plant species and cropping systems, we have chosen one field that is left fallow along with eight continuously farmed areas to research. Among the eight phyla, the relative abundance of Ascomycota was significantly higher in Polygonum multiflorum, which was continuously cropped in fields for two years (P2). Basidiomycota was considerably higher in the fallow field (CK). Among the 1063 genera, the relative abundance of Fusarium was significantly higher in maize continuous-cropped fields for six years (M6), followed by Fritillaria thunbergii continuous-cropped fields for two years (F2), and found lower Fusarium abundance in CK. The alpha diversity observed in taxa, Chao1, and phylogenetic diversity indices were significantly higher in M2. β-diversity found that the fungal communities in the samples clustered from the fields in the same year were quite similar. In all the soil samples, the saprotrophic trophic type was the most common among the OTUs that had been given a function. Our studies have proved that continuous cropping and plant species changed the fungal community’s composition, diversity, and structure. This research may serve as a guide for overcoming significant agricultural challenges and advancing the industry’s sustainable growth.
    Type of Medium: Online Resource
    ISSN: 2073-4395
    Language: English
    Publisher: MDPI AG
    Publication Date: 2023
    detail.hit.zdb_id: 2607043-1
    SSG: 23
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  • 3
    In: Industrial Crops and Products, Elsevier BV, Vol. 180 ( 2022-06), p. 114691-
    Type of Medium: Online Resource
    ISSN: 0926-6690
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2022
    detail.hit.zdb_id: 1483245-8
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  • 4
    In: Plants, MDPI AG, Vol. 9, No. 2 ( 2020-02-13), p. 244-
    Abstract: Soil types and cropping systems influence the diversity and composition of the rhizospheric microbial communities. Coptis chinensis Franch is one of the most important medicinal plants in China. In the current study, we provide detailed information regarding the diversity and composition of rhizospheric fungal communities of the C. chinensis plants in continuous cropping fields and fallow fields in two seasons (winter and summer), using next-generation sequencing. Alpha diversity was higher in the five-year C. chinensis field and lower in fallow fields. Significant differences analysis confirmed more fungi in the cultivated field soil than in fallow fields. Additionally, PCoA of beta diversity indices revealed that samples associated with the cultivated fields and fallow fields in different seasons were separated. Five fungal phyla (Ascomycota, Basidiomycota, Chytridiomycota, Glomeromycota and Mucoromycota) were identified from the soil samples in addition to the unclassified fungal taxa and Cryptomycota, and among these phyla, Ascomycota was predominantly found. FUNGuild fungal functional prediction revealed that saprotroph was the dominant trophic type in all two time-series soil samples. Redundancy analysis (RDA) of the dominant phyla data and soil physiochemical properties revealed the variations in fungal community structure in the soil samples. Knowledge from the present study could provide a valuable reference for solving the continuous cropping problems and promote the sustainable development of the C. chinensis industry.
    Type of Medium: Online Resource
    ISSN: 2223-7747
    Language: English
    Publisher: MDPI AG
    Publication Date: 2020
    detail.hit.zdb_id: 2704341-1
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  • 5
    In: International Journal of Molecular Sciences, MDPI AG, Vol. 23, No. 24 ( 2022-12-14), p. 15932-
    Abstract: Medicinal plants produce important substrates for their adaptation and defenses against environmental factors and, at the same time, are used for traditional medicine and industrial additives. Plants have relatively little in the way of secondary metabolites via biosynthesis. Recently, the whole-genome sequencing of medicinal plants and the identification of secondary metabolite production were revolutionized by the rapid development and cheap cost of sequencing technology. Advances in functional genomics, such as transcriptomics, proteomics, and metabolomics, pave the way for discoveries in secondary metabolites and related key genes. The multi-omics approaches can offer tremendous insight into the variety, distribution, and development of biosynthetic gene clusters (BGCs). Although many reviews have reported on the plant and medicinal plant genome, chemistry, and pharmacology, there is no review giving a comprehensive report about the medicinal plant genome and multi-omics approaches to study the biosynthesis pathway of secondary metabolites. Here, we introduce the medicinal plant genome and the application of multi-omics tools for identifying genes related to the biosynthesis pathway of secondary metabolites. Moreover, we explore comparative genomics and polyploidy for gene family analysis in medicinal plants. This study promotes medicinal plant genomics, which contributes to the biosynthesis and screening of plant substrates and plant-based drugs and prompts the research efficiency of traditional medicine.
    Type of Medium: Online Resource
    ISSN: 1422-0067
    Language: English
    Publisher: MDPI AG
    Publication Date: 2022
    detail.hit.zdb_id: 2019364-6
    SSG: 12
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  • 6
    In: Nature Communications, Springer Science and Business Media LLC, Vol. 12, No. 1 ( 2021-06-02)
    Abstract: Chinese goldthread ( Coptis chinensis Franch.), a member of the Ranunculales, represents an important early-diverging eudicot lineage with diverse medicinal applications. Here, we present a high-quality chromosome-scale genome assembly and annotation of C. chinensis . Phylogenetic and comparative genomic analyses reveal the phylogenetic placement of this species and identify a single round of ancient whole-genome duplication (WGD) shared by the Ranunculaceae. We characterize genes involved in the biosynthesis of protoberberine-type alkaloids in C. chinensis . In particular, local genomic tandem duplications contribute to member amplification of a Ranunculales clade-specific gene family of the cytochrome P450 (CYP) 719. The functional versatility of a key CYP719 gene that encodes the ( S )-canadine synthase enzyme involved in the berberine biosynthesis pathway may play critical roles in the diversification of other berberine-related alkaloids in C. chinensis . Our study provides insights into the genomic landscape of early-diverging eudicots and provides a valuable model genome for genetic and applied studies of Ranunculales.
    Type of Medium: Online Resource
    ISSN: 2041-1723
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2021
    detail.hit.zdb_id: 2553671-0
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  • 7
    In: Diversity, MDPI AG, Vol. 12, No. 2 ( 2020-02-01), p. 57-
    Abstract: Soil microorganisms are critical factors of plant productivity in terrestrial ecosystems. Coptis chinensis Franch is one of the most important medicinal plants in China. Soil types and cropping systems influence the diversity and composition of the rhizospheric microbial communities. In the current study, we provide detailed information regarding the diversity and composition of the rhizospheric bacterial communities of the C. chinensis plants in continuously cropped fields and fallow fields in two seasons (i.e., winter and summer) using next-generation sequencing. The alpha diversity was higher in the five-year cultivated C. chinensis field (CyS5) and lower in fallow fields (NCS). Significant differences analysis confirmed more biomarkers in the cultivated field soil than in fallow fields. Additionally, the principal coordinate analysis (PcoA) of the beta diversity indices revealed that samples associated with the cultivated fields and fallow fields in different seasons were separated. Besides, Proteobacteria, Actinobacteria, Chloroflexi, Acidobacteria, Bacteroidetes, Gemmatimonadetes were the top bacterial phyla. Among these phyla, Proteobacteria were found predominantly and showed a decreasing trend with the continuous cropping of C. chinensis. A phylogenetic investigation of communities by reconstruction of unobserved states (PICRUSt) revealed that the abundance of C and N functional genes had a significant difference between the soil samples from cultivated (CyS1, CyS3, and CyS5) and fallow (NCS) fields in two seasons (winter and summer). The principal coordinate analysis (PCoA) based on UniFrac distances (i.e., unweighted and weighted) revealed the variations in bacterial community structures in the soil samples. This study could provide a reference for solving the increasingly severe cropping obstacles and promote the sustainable development of the C. chinensis industry.
    Type of Medium: Online Resource
    ISSN: 1424-2818
    Language: English
    Publisher: MDPI AG
    Publication Date: 2020
    detail.hit.zdb_id: 2518137-3
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  • 8
    In: 3 Biotech, Springer Science and Business Media LLC, Vol. 11, No. 11 ( 2021-11)
    Type of Medium: Online Resource
    ISSN: 2190-572X , 2190-5738
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2021
    detail.hit.zdb_id: 2600522-0
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  • 9
    In: Agronomy, MDPI AG, Vol. 13, No. 6 ( 2023-05-31), p. 1524-
    Abstract: Plant diseases are one of the major threats to global food production. Efficient monitoring and detection of plant pathogens are instrumental in restricting and effectively managing the spread of the disease and reducing the cost of pesticides. Traditional, molecular, and serological methods that are widely used for plant disease detection are often ineffective if not applied during the initial stages of pathogenesis, when no or very weak symptoms appear. Moreover, they are almost useless in acquiring spatialized diagnostic results on plant diseases. On the other hand, remote sensing (RS) techniques utilizing drones are very effective for the rapid identification of plant diseases in their early stages. Currently, drones, play a pivotal role in the monitoring of plant pathogen spread, detection, and diagnosis to ensure crops’ health status. The advantages of drone technology include high spatial resolution (as several sensors are carried aboard), high efficiency, usage flexibility, and more significantly, quick detection of plant diseases across a large area with low cost, reliability, and provision of high-resolution data. Drone technology employs an automated procedure that begins with gathering images of diseased plants using various sensors and cameras. After extracting features, image processing approaches use the appropriate traditional machine learning or deep learning algorithms. Features are extracted from images of leaves using edge detection and histogram equalization methods. Drones have many potential uses in agriculture, including reducing manual labor and increasing productivity. Drones may be able to provide early warning of plant diseases, allowing farmers to prevent costly crop failures.
    Type of Medium: Online Resource
    ISSN: 2073-4395
    Language: English
    Publisher: MDPI AG
    Publication Date: 2023
    detail.hit.zdb_id: 2607043-1
    SSG: 23
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  • 10
    Online Resource
    Online Resource
    Marwah Infotech ; 2019
    In:  SSR Institute of International Journal of Life Sciences Vol. 5, No. 5 ( 2019-09), p. 2402-2411
    In: SSR Institute of International Journal of Life Sciences, Marwah Infotech, Vol. 5, No. 5 ( 2019-09), p. 2402-2411
    Type of Medium: Online Resource
    ISSN: 2581-8732 , 2581-8740
    Uniform Title: Management of Termites Using Wood Extractives and Microbes: A Mini Review
    Language: Unknown
    Publisher: Marwah Infotech
    Publication Date: 2019
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