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  • 1
    In: Neuro-Oncology, Oxford University Press (OUP), Vol. 25, No. Supplement_1 ( 2023-06-12), p. i9-i10
    Abstract: Replication Repair Deficiency (RRD), caused by germline monoallelic (Lynch Syndrome) or biallelic (Constitutional Mismatch Repair Deficiency, CMMRD) mutations in MMR genes, is present in 5-10% of glioblastomas in children, adolescents, and young adults. RRD glioblastomas are chemoradiation-resistant, but respond favorably to immune checkpoint inhibition (ICI). Representative immunocompetent animal models are urgently needed for 3 recently identified subgroups based on specific somatically-acquired mutations, survival, and immunotherapy response (RRD1: MMRD with POLE mutations, RRD2: MMRD associated with TP53 mutations, and RRD3: MMRD harboring IDH1 mutations). Using germline mutations and brain-specific Cre-drivers, we genetically engineered mouse models that recapitulate each human RRD-subgroup. RRD1 (Nestin- and Olig2-Cre+/ Msh2LoxP/LoxP/PoleS459F/+ and LSL-PoleP286R/+): CMMRD-like Nestin-Cre-driven mice develop posterior-fossa glioma-like or medulloblastoma (MB)-like tumors at ~2.7 months. Olig2-Cre-driven mice display hemispheric gliomas at ~10 months, suggesting distinct cell-of-origin. RRD2 (Nestin-Cre+/Trp53LoxP/LoxP and Msh2LoxP/LoxP or Mlh1-/-): CMMRD-like tumors develop in heterogenous locations at ~4.5 months (p & lt;0.0001), classifying primarily as MB-like in hindbrain, and glioma-like in other brain regions. Strikingly, germline Mlh1 tumors occur earlier than Nestin-Cre-driven RRD2 tumors, indicating early developmental mutation accumulation in CMMRD-patients. Lynch-like RRD1/2 mice succumb exclusively to gliomas & gt;13 months (p & lt;0.0001). RRD3 (Olig2-Cre+/Msh2LoxP/LoxP/Trp53LoxP/LoxP/LSL-Idh1R132H/+): brain tumors occur later and are hemispheric. These observations recapitulate human data, where CMMRD-patients develop glioblastoma/MB earlier than Lynch-patients (8.6 vs. 14-years; p & lt;0.0001), and posterior-fossa glioblastoma/MB presents earlier than hemispheric gliomas (p=0.04). Additionally, tumor onset and location vary (RRD1: 7.6-years, RRD2: 8.3-years, hemispheric/posterior-fossa; RRD3: 12-years, hemispheric; p=0.005). In both mice and humans, RRD1 exhibits ultra-hypermutation, high immune infiltration, and response to ICI, whereas RRD2 harbors lower mutational burden, are immune-cold, and ICI-monotherapy resistant. Temporal dynamics of RRD tumor development is currently being tracked by serial MRI to define biologically relevant time points. Our models accurately mimic the human condition and provide unique insights into RRD tumorigenesis, allowing optimization of subgroup-tailored therapeutic approaches.
    Type of Medium: Online Resource
    ISSN: 1522-8517 , 1523-5866
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2023
    detail.hit.zdb_id: 2094060-9
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  • 2
    In: Neuro-Oncology, Oxford University Press (OUP), Vol. 25, No. Supplement_1 ( 2023-06-12), p. i64-i64
    Abstract: Replication-repair deficiency (RRD) stemming from mismatch repair and polymerase-proofreading gene defects (MMRD/PPD) lead to hypermutant childhood cancers, most frequently brain tumors. While medulloblastoma is reported, the clinical, genomic and immune landscape remains unknown. METHODS We analysed the genome, methylome, transcriptome (bulk, single-nuclei) and immune-microenvironment of the largest cohort of RRD-medulloblastoma patients enrolled by the International RRD Consortium, and correlated these to clinical outcomes. RRD mice-models were used to preclinically assess response to immunotherapy. RESULTS RRD-medulloblastoma (n=40) were enriched for anaplasia (55%) and localised disease (85%). Methylation/nano-string-based subgrouping failed to classify 40%, while the remaining clustered with the SHH-subgroup. Copy-number changes were notably infrequent ( & lt;20%). All tumors harboured hypermutation and microsatellite instability in contrast to non-RRD controls (p & lt;0.0001). Pathogenic variants were frequent in POLE/POLD1 (80%), TP53 (48%) and SHH-pathway genes (PTCH1, SUFU, SMO: 56%). Interestingly, some tumors additionally had glioma-driver alterations (ATRX, NF1: ~50%), similar to RRD cerebellar glioblastoma, but distinct from both non-RRD medulloblastoma (n=791) and hemispheric glioblastoma (n=733) controls. Moreover, although bulk-transcriptome matched non-RRD SHH-medulloblastoma, single-nuclei analyses suggested an earlier cell-of-origin potentially explaining the heterogenous phenotypes resulting from the driver mutations. Uniquely, immune analyses (gene expression and immunohistochemistry) demonstrated high intra-tumoral CD8 T-cell infiltration. Three-year progression-free survival was 60%. Outcome was worse for RRD-medulloblastoma harbouring TP53-mutation (p=0.04) and failing subgroup-classification (p=0.004). Nestin/Cre MSH2-/- POLE;p.S459F mice developing medulloblastoma recapitulated human disease and demonstrated response to anti-PD1 monotherapy. Recurrent/progressive human tumors including those harbouring TP53-mutations exhibited radiological responses to anti-PD1 monotherapy, which was associated with prolonged ongoing survival in comparison to those not treated with checkpoint-inhibitors (p=0.02). CONCLUSIONS Hypermutant RRD-medulloblastoma reveal heterogenous phenotypes due to unique spectrum of driver mutations and an early cell of origin. Their immune-hot microenvironment allows successful salvage treatment with checkpoint-inhibitors for those failing chemo-radiation, including the high-risk SHH/TP53-mutant and unclassified subgroups.
    Type of Medium: Online Resource
    ISSN: 1522-8517 , 1523-5866
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2023
    detail.hit.zdb_id: 2094060-9
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  • 3
    In: Toxicon, Elsevier BV, Vol. 238 ( 2024-02), p. 107567-
    Type of Medium: Online Resource
    ISSN: 0041-0101
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2024
    detail.hit.zdb_id: 1498784-3
    SSG: 12
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  • 4
    Online Resource
    Online Resource
    Springer Science and Business Media LLC ; 2019
    In:  Indian Journal of Otolaryngology and Head & Neck Surgery Vol. 71, No. S1 ( 2019-10), p. 553-557
    In: Indian Journal of Otolaryngology and Head & Neck Surgery, Springer Science and Business Media LLC, Vol. 71, No. S1 ( 2019-10), p. 553-557
    Type of Medium: Online Resource
    ISSN: 2231-3796 , 0973-7707
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2019
    detail.hit.zdb_id: 2181728-5
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  • 5
    In: Journal of Biological Chemistry, Elsevier BV, Vol. 293, No. 30 ( 2018-07), p. 11913-11927
    Type of Medium: Online Resource
    ISSN: 0021-9258
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2018
    detail.hit.zdb_id: 2141744-1
    detail.hit.zdb_id: 1474604-9
    SSG: 12
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  • 6
    In: Symmetry, MDPI AG, Vol. 14, No. 4 ( 2022-04-03), p. 736-
    Abstract: In this paper, we give the generalized version of the quantum Simpson’s and quantum Newton’s formula type inequalities via quantum differentiable α,m-convex functions. The main advantage of these new inequalities is that they can be converted into quantum Simpson and quantum Newton for convex functions, Simpson’s type inequalities α,m-convex function, and Simpson’s type inequalities without proving each separately. These inequalities can be helpful in finding the error bounds of Simpson’s and Newton’s formulas in numerical integration. Analytic inequalities of this type as well as particularly related strategies have applications for various fields where symmetry plays an important role.
    Type of Medium: Online Resource
    ISSN: 2073-8994
    Language: English
    Publisher: MDPI AG
    Publication Date: 2022
    detail.hit.zdb_id: 2518382-5
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  • 7
    Online Resource
    Online Resource
    Medip Academy ; 2023
    In:  International Journal of Scientific Reports Vol. 9, No. 10 ( 2023-09-27), p. 329-337
    In: International Journal of Scientific Reports, Medip Academy, Vol. 9, No. 10 ( 2023-09-27), p. 329-337
    Abstract: Neonatal mortality is a widely significant problem since diseases such as sepsis, apnea and jaundice have claimed the lives of 2.3 million neonates in 2021. As such, better tools need to be developed to reduce its rate. While traditional methods like Clinical risk index (CRIB) and Score for neonatal acute physiology (SNAP) have proven helpful in predicting neonatal mortality, there is a need for more efficient measures. One such approach is support vector machine (SVM), a supervised machine-learning algorithm that is primarily used for classification. SVM can perform both linear and non-linear classification; it conducts the latter with the assistance of the kernel trick and functions such as polynomial, gaussian, RBF and sigmoid functions. This narrative review aims to explore the potential and limitations of SVM in predicting major global causes of neonatal mortality. We searched through articles employing SVM to predict different diseases and symptoms such as sepsis, seizures, fetal heart rate, low birth weight, hypoxic-ischemic encephalopathy, apnea, jaundice and neonatal respiratory distress syndrome, and concluded that while SVM has its merits and has shown promising results in many aspects, it also has its demerits such as requiring an extensive training time to achieve higher accuracy and precision.
    Type of Medium: Online Resource
    ISSN: 2454-2164 , 2454-2156
    Language: Unknown
    Publisher: Medip Academy
    Publication Date: 2023
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  • 8
    Online Resource
    Online Resource
    Forensicwayout ; 2016
    In:  INTERNATIONAL JOURNAL OF ETHICS, TRAUMA & VICTIMOLOGY Vol. 2, No. 02 ( 2016-12-28), p. 21-25
    In: INTERNATIONAL JOURNAL OF ETHICS, TRAUMA & VICTIMOLOGY, Forensicwayout, Vol. 2, No. 02 ( 2016-12-28), p. 21-25
    Abstract: We all have seen/ experienced incidences of corporal punishment, but most of us don’t see them as something strange/ to question, and yet it makes us feel uncomfortable. In other words; corporal punishment is just one of the wrong ways to discipline a child. In our society, it is a trend that children in school as well as at home are physically punished if they do not conform to the set social behavior. The punishment varies from physical abuse to psychological abuse. A child responds differently to the menace of corporal punishment and the uncontrolled anger of the parent/ teacher, may result in injuries or even death of the child. Children respect and admire adults whether parents/ teachers but these punishments may lead to anger and frustration which diminish the intimacy which the child has towards them and to cope up with the persistent abuse, the child indulges in self-destructive activities like alcohol abuse etc and even suicidal attempts. Chronic abuse of the child leads to a breach of the trust between the child and the parent/ teacher causing effects beyond physical/ mental trauma, there is an erosion of the self-esteem, fear of closeness and illconceived attempts to avoid unpleasant reminders of child abuse. The use of corporal punishment is strongly rooted in our society and is passed on through generations. However, this doesn’t mean that corporal punishment is justified. So, putting an end to corporal punishment is our ethical duty.
    Type of Medium: Online Resource
    ISSN: 2395-4272 , 2394-6822
    Language: Unknown
    Publisher: Forensicwayout
    Publication Date: 2016
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  • 9
    Online Resource
    Online Resource
    Lahore Medical and Dental College ; 2021
    In:  Pakistan Journal of Medical and Health Sciences Vol. 15, No. 9 ( 2021-09-30), p. 2488-2489
    In: Pakistan Journal of Medical and Health Sciences, Lahore Medical and Dental College, Vol. 15, No. 9 ( 2021-09-30), p. 2488-2489
    Abstract: Objective: This study is conducted to ascertain the microbial agents along with their prevalence leading to urinary tract infections in patients admitted in Bakhtawar Amin Hospital, Multan with manifestations of urinary tract infections. Design: Descriptive observational study Place and duration of study: Department of Microbiology Bakhtawar Amin Medical & Dental College & Hospital, Multan from January 2021 to July 2021. Material and Methods: A total of 220 positive urine cultures were analyzed in this study extended for six months. All the appropriate details like age, gender, major presenting complaints, history of catheterization etc were noted. All the isolated urinary pathogens were recorded along with their frequency and percentages. Results: Out of these 220 patients with positive urine cultures, majority (63.6%) were male. Gram negative bacteria (E. Coli) constitute the major bulk of urinary pathogens followed by Candida. Conclusion: Urinary tract infections were commonly seen in men in our region. E. Coli was the most frequently encountered bacteria. A large number of Candida species were segregated in immunocompromised critically ill ICU admitted patients. Keywords: Urinary tract infection, culture, pathogens, E.Coli, Candida.
    Type of Medium: Online Resource
    URL: Issue
    Language: Unknown
    Publisher: Lahore Medical and Dental College
    Publication Date: 2021
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