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  • 1
    Online Resource
    Online Resource
    Microbiology Society ; 2013
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 63, No. Pt_12 ( 2013-12-01), p. 4744-4749
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 63, No. Pt_12 ( 2013-12-01), p. 4744-4749
    Abstract: A pink-pigmented, chemo-organotrophic bacterium, designated strain 03SUJ4 T , was isolated from the freshwater of Juam reservoir, Republic of Korea (35° 03′ 43′′ N 127° 14′ 15′′ E). Cells were aerobic, Gram-reaction-negative and non-motile rods. Strain 03SUJ4 T grew at pH 6–7 (optimum, pH 6) and at 15–30 °C (optimum, 25 °C). Phylogenetic analysis based on 16S rRNA gene sequences indicated that the isolate belonged to the genus Terriglobus , showing sequence similarities of 97.09 % and 96.82 % to Terriglobus roseus DSM 18391 T and Terriglobus saanensis SP1PR4 T , respectively. Low rpoB gene sequence similarity with members of the genus Terriglobus and different fingerprints with the repetitive primers BOX, ERIC and REP indicated that the isolate represented a novel species of the genus Terriglobus . The major cellular fatty acids were iso-C 15 : 0 , C 16 : 0 , C 20 : 1 ω9 c , C 14 : 0 and summed feature 3 (C 16 : 1 ω7 c /C 16 : 1 ω6 c ). The DNA G+C content of strain 03SUJ4 T was 63.2±0.1 mol% (mean± sd of three determinations). The predominant menaquinone was MK-8. The major polar lipids were phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylglycerol and two unidentified phospholipids. Several phenotypic characteristics served to differentiate the novel isolate from recognized members of the genus Terriglobus . On the basis of the evidence presented in this study, a novel species, Terriglobus aquaticus sp. nov. is proposed for strain 03SUJ4 T ( = KCTC 23332 T  = JCM 17517 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2013
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 2
    Online Resource
    Online Resource
    Microbiology Society ; 2011
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 61, No. 4 ( 2011-04-01), p. 709-715
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 61, No. 4 ( 2011-04-01), p. 709-715
    Abstract: Two non-motile, orange- or yellow-pigmented bacteria, designated strains KYW48 T and KYW147 T , were isolated from seawater collected from the South Sea, Republic of Korea. Cells of both strains were Gram-reaction-negative, aerobic and catalase- and oxidase-positive. The major fatty acids of strain KYW48 T were C 18 : 1 ω7 c (35.3 %), summed feature 3 (iso-C 15 : 0 2-OH and/or C 16 : 1 ω7 c ) (22.7 %), C 17 : 1 ω6 c (19.8 %), C 14 : 0 2-OH (7.4 %) and C 16 : 0 (5.9 %), and those of strain KYW147 T were C 18 : 1 ω7 c (36.0 %), summed feature 3 (18.3 %), C 16 : 0 (14.7 %), 11-methyl C 18 : 1 ω7 c (10.7 %), C 16 : 0 2-OH (9.1 %) and C 18 : 1 ω9 c (8.0 %). The predominant isoprenoid quinone of both strains was ubiquinone 10 (Q-10). The DNA G+C contents of strains KYW48 T and KYW147 T were 63.8 and 67.2 mol%, respectively. A phylogenetic tree based on 16S rRNA gene sequences showed that strains KYW48 T and KYW147 T were grouped with the members of the family Erythrobacteraceae and formed a distinct clade with the members of the genus Altererythrobacter ( 〈 95.7 % sequence similarity). On the basis of the evidence presented in this study, the novel species Altererythrobacter namhicola sp. nov. (type strain KYW48 T  = KCTC 22736 T  = JCM 16345 T ) and Altererythrobacter aestuarii sp. nov. (type strain KYW147 T  = KCTC 22735 T  = JCM 16339 T ) are proposed.
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2011
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 3
    Online Resource
    Online Resource
    Microbiology Society ; 2013
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 63, No. Pt_7 ( 2013-07-01), p. 2678-2683
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 63, No. Pt_7 ( 2013-07-01), p. 2678-2683
    Abstract: A Gram-staining-negative, non-spore-forming, non-gliding and rod-shaped bacterial strain KYW566 T , was isolated from seawater of the Suncheon Bay, Korea, and its taxonomic position was investigated by using a polyphasic study. The cells contained MK-6 as the only respiratory quinone and contained iso-C 15 : 0 (13.8 %), iso-C 16 : 0 3-OH (13.1 %), anteiso-C 15 : 0 (9.3 %), iso-C 15 : 0 3-OH (8.7 %), iso-C 15 : 1 G (6.3 %) and summed feature 3 (C 16 : 1 ω7 c and/or C 16 : 1 ω6 c ) (6.0 %) as the major fatty acids. The DNA G+C content of strain KYW566 T was 41.6±0.8 mol% (mean± sd of three determinations). A phylogenetic tree based on 16S rRNA gene sequences showed that strain KYW566 T forms an evolutionary lineage within the radiation enclosing the members of the genus Lutibacter with Lutibacter flavus IMCC1507 T as its nearest neighbour (96.7 % sequence similarity). A number of phenotypic characteristics distinguished strain KYW566 T from described members of the genus Lutibacter . On the basis of the evidences presented in this study, strain KYW566 T represents a novel species, for which the name Lutibacter agarilyticus sp. nov. is proposed. The type strain is KYW566 T ( = KCTC 23842 T  = JCM 18281 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2013
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 4
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 63, No. Pt_9 ( 2013-09-01), p. 3494-3500
    Abstract: Two yellow-pigmented, rod-shaped, non-motile, Gram-reaction-negative and aerobic bacterial strains, designated KYW560 T and KYW563 T , were isolated from seawater collected from Gwangyang Bay, Republic of Korea. The isolates required sea salts for growth. Flexirubin-type pigments were absent. The common major cellular fatty acids ( 〉 5 % of total) of the two strains were C 16 : 0 , C 18 : 0 , iso-C 15 : 0 , anteiso-C 15 : 0 , iso-C 15 : 1 G, iso-C 17 : 0 3-OH and summed feature 3 (C 16 : 1 ω6 c and/or C 16 : 1 ω7 c ). Strain KYW560 T also contained iso-C 15 : 0 3-OH and C 20 : 1 ω9 c as major fatty acids. The main polar lipids were phosphatidylethanolamine, an unidentified aminolipid and two unidentified lipids. The predominant isoprenoid quinone was MK-6. The DNA G+C contents of strains KYW560 T and KYW563 T were 41.0±0.7 and 38.3±0.4 mol% (mean± sd of three determinations), respectively. Phylogenetic analysis based on 16S rRNA gene sequences indicated that the isolates belonged to the family Flavobacteriaceae , and were related to the genus Algibacter . Based on data from this taxonomic study using a polyphasic approach, it is proposed that the isolates represent novel species of the genus Algibacter , for which the names Algibacter agarivorans sp. nov. (type strain, KYW560 T  = KCTC 23855 T  = JCM 18285 T ) and Algibacter agarilyticus sp. nov. (type strain, KYW563 T  = KCTC 23857 T  = JCM 18275 T ) are proposed. Reclassification of Marinivirga aestuarii as Algibacter aestuarii comb. nov. and emended description of the genus Algibacter are also proposed.
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2013
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 5
    Online Resource
    Online Resource
    Microbiology Society ; 2015
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 65, No. Pt_11 ( 2015-11-01), p. 4049-4054
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 65, No. Pt_11 ( 2015-11-01), p. 4049-4054
    Abstract: A non-motile, cocobacilli-shaped and pink-pigmented bacterium, designated strain WW53 T , was isolated from wetland freshwater (Woopo wetland, Republic of Korea). Cells were Gram-stain-negative, catalase- and oxidase-positive. The major fatty acids were C 18 : 1 ω7 c /C 18 : 1 ω6 c and C 16 : 0 .The predominant quinone and polyamine were ubiquinone 10 (Q-10) and spermidine, respectively. The DNA G+C content was 71 mol%. The major polar lipids were phosphatidylethanolamine, phosphatidylcholine and an unknown aminolipid. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain WW53 T belongs to the family Acetobacteraceae , and is related to the genus Roseomonas . Strain WW53 T was most closely related to Roseomonas stagni HS-69 T (95.3 % 16S rRNA gene sequence similarity). Results of a polyphasic taxonomy study suggested that the isolate represents a novel species in the genus Roseomonas , for which the name Roseomonas wooponensis sp. nov. is proposed. The type strain is WW53 T ( = KCTC 32534 T = JCM 19527 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2015
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
    Location Call Number Limitation Availability
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  • 6
    Online Resource
    Online Resource
    Microbiology Society ; 2016
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 66, No. 7 ( 2016-07-01), p. 2491-2496
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 66, No. 7 ( 2016-07-01), p. 2491-2496
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2016
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
    Location Call Number Limitation Availability
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  • 7
    Online Resource
    Online Resource
    Microbiology Society ; 2016
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 66, No. 9 ( 2016-09-01), p. 3546-3551
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 66, No. 9 ( 2016-09-01), p. 3546-3551
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2016
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
    Location Call Number Limitation Availability
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  • 8
    Online Resource
    Online Resource
    Microbiology Society ; 2007
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 57, No. 12 ( 2007-12-01), p. 2870-2873
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 57, No. 12 ( 2007-12-01), p. 2870-2873
    Abstract: A Gram-negative, yellow-pigmented bacterium capable of gliding motility, designated strain WPCB118 T , was isolated from fresh water collected from the Woopo wetland (Republic of Korea). Cells were rod-shaped and sometimes filamentous. The major fatty acids were iso-C 15 : 0 2-OH and/or C 16 : 1 ω 7 c (45.6 %), C 16 : 1 ω 5 c (18.5 %), iso-C 15 : 0 (9.5 %) and C 16 : 0 (8.8 %). The predominant menaquinone and polar lipid were MK-7 and phosphatidylethanolamine, respectively. The DNA G+C content was 53.3 mol%. A phylogenetic tree based on 16S rRNA gene sequences showed that strain WPCB118 T had an evolutionary lineage within the radiation encompassing the members of the family ‘ Flexibacteraceae ’, its closest neighbour being Spirosoma linguale LMG 10896 T (93.7 % gene sequence similarity). Data from this polyphasic study indicated that strain WPCB118 T could not be assigned to any recognized species. Strain WPCB118 T represents a novel species of the genus Spirosoma , for which the name Spirosoma rigui sp. nov. is proposed. The type strain is WPCB118 T (=KCTC 12531 T =NBRC 101117 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2007
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 9
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 62, No. Pt_10 ( 2012-10-01), p. 2495-2504
    Abstract: We have carried out a polyphasic taxonomic characterization of Bacillus beijingensis DSM 19037 T and Bacillus ginsengi DSM 19038 T , which are closely related phylogenetically to Bhargavaea cecembensis LMG 24411 T . All three strains are Gram-stain-positive, non-motile, moderately halotolerant and non-spore-forming. 16S rRNA gene sequence analyses showed that the strains constituted a coherent cluster, with sequence similarities between 99.7 and 98.7 %. The percentage similarity on the basis of amino acid sequences deduced from partial gyrB gene nucleotide sequences of these three type strains was 96.1–92.7 %. Phylogenetic trees based on the 16S rRNA gene and GyrB amino acid sequences, obtained by using three different algorithms, were consistent and showed that these three species constituted a deeply rooted cluster separated from the clades represented by the genera Bacillus , Planococcus , Planomicrobium , Sporosarcina , Lysinibacillus , Viridibacillus , Kurthia and Geobacillus , supporting their placement in the genus Bhargavaea . All three type strains have menaquinone MK-8 as the major respiratory quinone and showed similar fatty acid profiles. The main polar lipids present in the three type strains were diphosphatidylglycerol and phosphatidylglycerol, and the three strains showed peptidoglycan type A4α with l -lysine as the diagnostic diamino acid. The DNA G + C contents of Bacillus beijingensis DSM 19037 T , Bacillus ginsengi DSM 19038 T and Bhargavaea cecembensis LMG 24411 T were 53.1, 50.2 and 53.7 mol%, respectively. The level of DNA–DNA hybridization among the three strains was 57–39 %, indicating that they are members of different species of the genus Bhargavaea . The phenotypic data are consistent with the placement of these three species in a single genus and support their differentiation at the species level. On the basis of these data, we have emended the description of the genus Bhargavaea and propose the reclassification of Bacillus beijingensis and Bacillus ginsengi to the genus Bhargavaea , as Bhargavaea beijingensis comb. nov. (type strain ge10 T  = DSM 19037 T  = CGMCC 1.6762 T ) and Bhargavaea ginsengi comb. nov. (type strain ge14 T  = DSM 19038 T  = CGMCC 1.6763 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2012
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
    Location Call Number Limitation Availability
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  • 10
    Online Resource
    Online Resource
    Microbiology Society ; 2013
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 63, No. Pt_4 ( 2013-04-01), p. 1297-1303
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 63, No. Pt_4 ( 2013-04-01), p. 1297-1303
    Abstract: Two yellow-pigmented, Gram-reaction-negative strains, designated 01SU5-P T and 03SU3-P T , were isolated from the freshwater of Woopo wetland, Republic of Korea. Both strains were aerobic, non-motile and catalase-negative. Phylogenetic analysis based on 16S rRNA gene sequences indicated that the two isolates belong to the genus Sphingopyxis , showing the highest level of sequence similarity with respect to Sphingopyxis witflariensis W-50 T (95.4–95.7 %). The two novel isolates shared 99.4 % sequence similarity. DNA–DNA hybridization between the isolates and the type strain of S. witflariensis clearly suggested that strains 01SU5-P T and 03SU3-P T represent two separate novel species in the genus Sphingopyxis . The two strains displayed different fingerprints after PCR analysis using the repetitive primers BOX, ERIC and REP. Several phenotypic characteristics served to differentiate these two isolates from recognized members of the genus Sphingopyxis . The data from the polyphasic study presented here indicated that strains 01SU5-P T and 03SU3-P T should be classified as representing novel species in the genus Sphingopyxis , for which the names Sphingopyxis rigui sp. nov. and Sphingopyxis wooponensis sp. nov., respectively, are proposed. The type strain of Sphingopyxis rigui sp. nov. is 01SU5-P T ( = KCTC 23326 T  = JCM 17509 T ) and the type strain of Sphingopyxis wooponensis sp. nov. is 03SU3-P T ( = KCTC 23340 T  = JCM 17547 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2013
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
    Location Call Number Limitation Availability
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