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  • 1
    In: Molecular Ecology, Wiley, Vol. 28, No. 11 ( 2019-06), p. 2831-2845
    Abstract: To explore landscape genomics at the range limit of an obligate mutualism, we use genotyping‐by‐sequencing (ddRADseq) to quantify population structure and the effect of host–symbiont interactions between the northernmost fungus‐farming leafcutter ant Atta texana and its two main types of cultivated fungus. Genome‐wide differentiation between ants associated with either of the two fungal types is of the same order of magnitude as differentiation associated with temperature and precipitation across the ant's entire range, suggesting that specific ant–fungus genome–genome combinations may have been favoured by selection. For the ant hosts, we found a broad cline of genetic structure across the range, and a reduction of genetic diversity along the axis of range expansion towards the range margin. This population‐genetic structure was concordant between the ants and one cultivar type (M‐fungi, concordant clines) but discordant for the other cultivar type (T‐fungi). Discordance in population‐genetic structures between ant hosts and a fungal symbiont is surprising because the ant farmers codisperse with their vertically transmitted fungal symbionts. Discordance implies that (a) the fungi disperse also through between‐nest horizontal transfer or other unknown mechanisms, and (b) genetic drift and gene flow can differ in magnitude between each partner and between different ant–fungus combinations. Together, these findings imply that variation in the strength of drift and gene flow experienced by each mutualistic partner affects adaptation to environmental stress at the range margin, and genome–genome interactions between host and symbiont influence adaptive genetic differentiation of the host during range evolution in this obligate mutualism.
    Type of Medium: Online Resource
    ISSN: 0962-1083 , 1365-294X
    URL: Issue
    RVK:
    Language: English
    Publisher: Wiley
    Publication Date: 2019
    detail.hit.zdb_id: 2020749-9
    detail.hit.zdb_id: 1126687-9
    SSG: 12
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  • 2
    Online Resource
    Online Resource
    Public Library of Science (PLoS) ; 2008
    In:  PLoS Biology Vol. 6, No. 2 ( 2008-2-26), p. e36-
    In: PLoS Biology, Public Library of Science (PLoS), Vol. 6, No. 2 ( 2008-2-26), p. e36-
    Type of Medium: Online Resource
    ISSN: 1545-7885
    Language: English
    Publisher: Public Library of Science (PLoS)
    Publication Date: 2008
    detail.hit.zdb_id: 2126773-X
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  • 3
    Online Resource
    Online Resource
    Public Library of Science (PLoS) ; 2007
    In:  PLoS Biology Vol. 5, No. 9 ( 2007-8-14), p. e219-
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  • 4
    Online Resource
    Online Resource
    Wiley ; 2016
    In:  Molecular Ecology Resources Vol. 16, No. 6 ( 2016-11), p. 1315-1321
    In: Molecular Ecology Resources, Wiley, Vol. 16, No. 6 ( 2016-11), p. 1315-1321
    Abstract: RNA seq is a relatively new tool for ecological genetics that offers researchers insight into changes in gene expression in response to a myriad of natural or experimental conditions. However, standard RNA seq methods (e.g., Illumina TruSeq ® or NEBN ext ® ) can be cost prohibitive, especially when study designs require large sample sizes. Consequently, RNA seq is often underused as a method, or is applied to small sample sizes that confer poor statistical power. Low cost RNA seq methods could therefore enable far greater and more powerful applications of transcriptomics in ecological genetics and beyond. Standard mRNA seq is costly partly because one sequences portions of the full length of all transcripts. Such whole‐ mRNA data are redundant for estimates of relative gene expression. TagSeq is an alternative method that focuses sequencing effort on mRNA s’ 3’ end, reducing the necessary sequencing depth per sample, and thus cost. We present a revised TagSeq library construction procedure, and compare its performance against NEBN ext ® , the ‘gold‐standard’ whole mRNA seq method. We built both TagSeq and NEBN ext ® libraries from the same biological samples, each spiked with control RNA s. We found that TagSeq measured the control RNA distribution more accurately than NEBN ext ® , for a fraction of the cost per sample (~10%). The higher accuracy of TagSeq was particularly apparent for transcripts of moderate to low abundance. Technical replicates of TagSeq libraries are highly correlated, and were correlated with NEBN ext ® results. Overall, we show that our modified TagSeq protocol is an efficient alternative to traditional whole mRNA seq, offering researchers comparable data at greatly reduced cost.
    Type of Medium: Online Resource
    ISSN: 1755-098X , 1755-0998
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2016
    detail.hit.zdb_id: 2406833-0
    SSG: 12
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  • 5
    Online Resource
    Online Resource
    Proceedings of the National Academy of Sciences ; 2017
    In:  Proceedings of the National Academy of Sciences Vol. 114, No. 25 ( 2017-06-20), p. 6575-6580
    In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 114, No. 25 ( 2017-06-20), p. 6575-6580
    Abstract: Parasites can be a major cause of natural selection on hosts, which consequently evolve a variety of strategies to avoid, eliminate, or tolerate infection. When ecologically similar host populations present disparate infection loads, this natural variation can reveal immunological strategies underlying adaptation to infection and population divergence. For instance, the tapeworm Schistocephalus solidus persistently infects 0–80% of threespine stickleback ( Gasterosteus aculeatus ) in lakes on Vancouver Island. To test whether these heterogeneous infection rates result from evolved differences in immunity, we experimentally exposed laboratory-reared fish from ecologically similar high-infection and no-infection populations to controlled doses of Schistocephalus . We observed heritable between-population differences in several immune traits: Fish from the naturally uninfected population initiated a stronger granulocyte response to Schistocephalus infection, and their granulocytes constitutively generate threefold more reactive oxygen species in cell culture. Despite these immunological differences, Schistocephalus was equally successful at establishing initial infections in both host populations. However, the no-infection fish dramatically suppressed tapeworm growth relative to high-infection fish, and parasite size was intermediate in F1 hybrid hosts. Our results show that stickleback recently evolved heritable variation in their capacity to suppress helminth growth by two orders of magnitude. Data from many natural populations indicate that growth suppression is widespread but not universal and, when present, is associated with reduced infection prevalence. Host suppression of helminth somatic growth may be an important immune strategy that aids in parasite clearance or in mitigating the fitness costs of persistent infection.
    Type of Medium: Online Resource
    ISSN: 0027-8424 , 1091-6490
    RVK:
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    Language: English
    Publisher: Proceedings of the National Academy of Sciences
    Publication Date: 2017
    detail.hit.zdb_id: 209104-5
    detail.hit.zdb_id: 1461794-8
    SSG: 11
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  • 6
    Online Resource
    Online Resource
    Oxford University Press (OUP) ; 2022
    In:  Evolution Letters Vol. 6, No. 4 ( 2022-08-01), p. 330-340
    In: Evolution Letters, Oxford University Press (OUP), Vol. 6, No. 4 ( 2022-08-01), p. 330-340
    Abstract: Animals often adjust their behavior according to social context, but the capacity for such behavioral flexibility can vary among species. Here, we test for interspecific variation in behavioral flexibility by comparing burrowing behavior across three species of deer mice (genus Peromyscus) with divergent social systems, ranging from promiscuous (Peromyscus leucopus and Peromyscus maniculatus) to monogamous (Peromyscus polionotus). First, we compared the burrows built by individual mice to those built by pairs of mice in all three species. Although burrow length did not differ in P. leucopus or P. maniculatus, we found that P. polionotus pairs cooperatively constructed burrows that were nearly twice as long as those built by individuals and that opposite-sex pairs dug longer burrows than same-sex pairs. Second, to directly observe cooperative digging behavior in P. polionotus, we designed a burrowing assay in which we could video-record active digging in narrow, transparent enclosures. Using this novel assay, we found, unexpectedly, that neither males nor females spent more time digging with an opposite-sex partner. Rather, we demonstrate that opposite-sex pairs are more socially cohesive and thus more efficient digging partners than same-sex pairs. Together, our study demonstrates how social context can modulate innate behavior and offers insight into how differences in behavioral flexibility may evolve among closely related species.
    Type of Medium: Online Resource
    ISSN: 2056-3744
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2022
    detail.hit.zdb_id: 2894293-0
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  • 7
    In: Ecology and Evolution, Wiley, Vol. 14, No. 6 ( 2024-06)
    Abstract: Eco‐evolutionary experiments are typically conducted in semi‐unnatural controlled settings, such as mesocosms; yet inferences about how evolution and ecology interact in the real world would surely benefit from experiments in natural uncontrolled settings. Opportunities for such experiments are rare but do arise in the context of restoration ecology—where different “types” of a given species can be introduced into different “replicate” locations. Designing such experiments requires wrestling with consequential questions. (Q1) Which specific “types” of a focal species should be introduced to the restoration location? (Q2) How many sources of each type should be used—and should they be mixed together? (Q3) Which specific source populations should be used? (Q4) Which type(s) or population(s) should be introduced into which restoration sites? We recently grappled with these questions when designing an eco‐evolutionary experiment with threespine stickleback ( Gasterosteus aculeatus ) introduced into nine small lakes and ponds on the Kenai Peninsula in Alaska that required restoration. After considering the options at length, we decided to use benthic versus limnetic ecotypes (Q1) to create a mixed group of colonists from four source populations of each ecotype (Q2), where ecotypes were identified based on trophic morphology (Q3), and were then introduced into nine restoration lakes scaled by lake size (Q4). We hope that outlining the alternatives and resulting choices will make the rationales clear for future studies leveraging our experiment, while also proving useful for investigators considering similar experiments in the future.
    Type of Medium: Online Resource
    ISSN: 2045-7758 , 2045-7758
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2024
    detail.hit.zdb_id: 2635675-2
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  • 8
    Online Resource
    Online Resource
    Springer Science and Business Media LLC ; 2023
    In:  Evolutionary Ecology Vol. 37, No. 1 ( 2023-02), p. 203-214
    In: Evolutionary Ecology, Springer Science and Business Media LLC, Vol. 37, No. 1 ( 2023-02), p. 203-214
    Type of Medium: Online Resource
    ISSN: 0269-7653 , 1573-8477
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2023
    detail.hit.zdb_id: 1497820-9
    SSG: 12
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  • 9
    Online Resource
    Online Resource
    Wiley ; 2014
    In:  Molecular Ecology Vol. 23, No. 24 ( 2014-12), p. 5937-5942
    In: Molecular Ecology, Wiley, Vol. 23, No. 24 ( 2014-12), p. 5937-5942
    Abstract: We are writing in response to the population and phylogenomics meeting review by Andrews & Luikart ( ) entitled ‘Recent novel approaches for population genomics data analysis’. Restriction‐site‐associated DNA ( RAD ) sequencing has become a powerful and useful approach in molecular ecology, with several different published methods now available to molecular ecologists, none of which can be considered the best option in all situations. A & L report that the original RAD protocol of Miller et al . ( ) and Baird et al . ( ) is superior to all other RAD variants because putative PCR duplicates can be identified (see Baxter et al . ), thereby reducing the impact of PCR artefacts on allele frequency estimates (Andrews & Luikart ). In response, we (i) challenge the assertion that the original RAD protocol minimizes the impact of PCR artefacts relative to that of other RAD protocols, (ii) present additional biases in RAD seq that are at least as important as PCR artefacts in selecting a RAD protocol and (iii) highlight the strengths and weaknesses of four different approaches to RAD seq which are a representative sample of all RAD variants: the original RAD protocol (mb RAD , Miller et al . ; Baird et al . ), double digest RAD (dd RAD , Peterson et al . ), ez RAD (Toonen et al . ) and 2b RAD (Wang et al . ). With an understanding of the strengths and weaknesses of different RAD protocols, researchers can make a more informed decision when selecting a RAD protocol.
    Type of Medium: Online Resource
    ISSN: 0962-1083 , 1365-294X
    URL: Issue
    RVK:
    Language: English
    Publisher: Wiley
    Publication Date: 2014
    detail.hit.zdb_id: 2020749-9
    detail.hit.zdb_id: 1126687-9
    SSG: 12
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  • 10
    Online Resource
    Online Resource
    American Association for the Advancement of Science (AAAS) ; 2019
    In:  Science Vol. 364, No. 6443 ( 2019-05-31), p. 831-832
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 364, No. 6443 ( 2019-05-31), p. 831-832
    Abstract: When organisms evolve to occupy new environments, what adaptations are necessary for the transitions, and how predictable are these solutions when the transitions occur repeatedly? On page 886 of this issue, Ishikawa et al. ( 1 ) describe a refreshingly precise and thorough example of how a single adaptive genetic innovation has repeatedly allowed marine fish to colonize and diversify in freshwater. Whereas previous studies on evolutionary transitions and subsequent radiations to new ecological niches have largely focused on morphology ( 2 , 3 ), the new study neatly links ecology, physiology, and genetics through a dietary adaptation.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
    RVK:
    RVK:
    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2019
    detail.hit.zdb_id: 128410-1
    detail.hit.zdb_id: 2066996-3
    detail.hit.zdb_id: 2060783-0
    SSG: 11
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