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  • 1
    Online Resource
    Online Resource
    American Association for the Advancement of Science (AAAS) ; 2019
    In:  Science Vol. 365, No. 6448 ( 2019-07-05), p. 73-75
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 365, No. 6448 ( 2019-07-05), p. 73-75
    Abstract: Lightweight magnesium alloys are attractive as structural materials for improving energy efficiency in applications such as weight reduction of transportation vehicles. One major obstacle for widespread applications is the limited ductility of magnesium, which has been attributed to 〈 c + a 〉 dislocations failing to accommodate plastic strain. We demonstrate, using in situ transmission electron microscope mechanical testing, that 〈 c + a 〉 dislocations of various characters can accommodate considerable plasticity through gliding on pyramidal planes. We found that submicrometer-size magnesium samples exhibit high plasticity that is far greater than for their bulk counterparts. Small crystal size usually brings high stress, which in turn activates more 〈 c + a 〉 dislocations in magnesium to accommodate plasticity, leading to both high strength and good plasticity.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
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    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2019
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  • 2
    Online Resource
    Online Resource
    Proceedings of the National Academy of Sciences ; 2019
    In:  Proceedings of the National Academy of Sciences Vol. 116, No. 27 ( 2019-07-02), p. 13404-13413
    In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 116, No. 27 ( 2019-07-02), p. 13404-13413
    Abstract: BRUCE/Apollon is a membrane-associated inhibitor of apoptosis protein that is essential for viability and has ubiquitin-conjugating activity. On initiation of apoptosis, the ubiquitin ligase Nrdp1/RNF41 promotes proteasomal degradation of BRUCE. Here we demonstrate that BRUCE together with the proteasome activator PA28γ causes proteasomal degradation of LC3-I and thus inhibits autophagy. LC3-I on the phagophore membrane is conjugated to phosphatidylethanolamine to form LC3-II, which is required for the formation of autophagosomes and selective recruitment of substrates. SIP/CacyBP is a ubiquitination-related protein that is highly expressed in neurons and various tumors. Under normal conditions, SIP inhibits the ubiquitination and degradation of BRUCE, probably by blocking the binding of Nrdp1 to BRUCE. On DNA damage by topoisomerase inhibitors, Nrdp1 causes monoubiquitination of SIP and thus promotes apoptosis. However, on starvation, SIP together with Rab8 enhances the translocation of BRUCE into the recycling endosome, formation of autophagosomes, and degradation of BRUCE by optineurin-mediated autophagy. Accordingly, deletion of SIP in cultured cells reduces the autophagic degradation of damaged mitochondria and cytosolic protein aggregates. Thus, by stimulating proteasomal degradation of LC3-I, BRUCE also inhibits autophagy. Conversely, SIP promotes autophagy by blocking BRUCE-dependent degradation of LC3-I and by enhancing autophagosome formation and autophagic destruction of BRUCE. These actions of BRUCE and SIP represent mechanisms that link the regulation of autophagy and apoptosis under different conditions.
    Type of Medium: Online Resource
    ISSN: 0027-8424 , 1091-6490
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    Language: English
    Publisher: Proceedings of the National Academy of Sciences
    Publication Date: 2019
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  • 3
    Online Resource
    Online Resource
    Proceedings of the National Academy of Sciences ; 2011
    In:  Proceedings of the National Academy of Sciences Vol. 108, No. 49 ( 2011-12-06), p. 19605-19610
    In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 108, No. 49 ( 2011-12-06), p. 19605-19610
    Abstract: We report here the identification of the key sites for the beta structure motifs of the islet amyloid polypeptide (IAPP) analogs by using scanning tunneling microscopy (STM). Duplex folding structures in human IAPP 8–37 (hIAPP 8–37 ) assembly were observed featuring a hairpin structure. The multiplicity in rIAPP assembly structures indicates the polydispersity of the rat IAPP 8–37 (rIAPP 8–37 ) beta-like motifs. The bimodal length distribution of beta structure motifs for rIAPP 8–37 R18H indicates the multiple beta segments linked by turns. The IAPP 8–37 analogs share common structure motifs of IAPP 8–17 and IAPP 26–37 with the most probable key sites at positions around Ser 19 /Ser 20 and Gly 24 . These observations reveal the similar amyloid formation tendency in the C and N terminus segments because of the sequence similarity, while the differences in specific amino acids at each key site manifest the effect of sequence variations. The results could be beneficial for studying structural polymorphism of amyloidal peptides with multiple beta structure motifs.
    Type of Medium: Online Resource
    ISSN: 0027-8424 , 1091-6490
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    Language: English
    Publisher: Proceedings of the National Academy of Sciences
    Publication Date: 2011
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  • 4
    In: Annals of the New York Academy of Sciences, Wiley, Vol. 1514, No. 1 ( 2022-08), p. 116-131
    Abstract: Experiments have demonstrated the regulation of long noncoding RNA (lncRNA) in tuberculosis (TB), and negative pressure treatment has been associated with the alleviation of TB. Here, we investigated the interaction of negative pressure and the lncRNA X‐inactive specific transcript (XIST) in modulating Mycobacterium tuberculosis (MTB) infection. Initially, we established an in vitro cell model of MTB infection and an in vivo mouse model of MTB infection, followed by treatment with negative pressure. Then, we examined the expression of XIST, followed by analysis of the downstream miRNA of XIST. XIST was overexpressed or underexpressed through cell transfection to examine its effects on macrophage polarization via the miR–125b–5p/A2 axis. The MTB models were characterized by upregulated XIST and downregulated miR‐125b‐5p. XIST bound to miR‐125b‐5p, leading to its downregulation, and thus causing higher MTB survival in an ESAT‐6–dependent manner. Additionally, negative pressure treatment decreased MTB‐driven XIST expression through downregulation of A20 (an NF‐κB repressor) via miR‐125b‐5 expression, promoting the M1 polarization program in macrophages through activation of the NF‐κB pathway. In summary, negative pressure treatment after MTB infection can promote the polarization of macrophages to the proinflammatory M1 phenotype by regulating the XIST/miR–125b–5p/A20/NF–κB axis.
    Type of Medium: Online Resource
    ISSN: 0077-8923 , 1749-6632
    URL: Issue
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    Language: English
    Publisher: Wiley
    Publication Date: 2022
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  • 5
    In: Nature, Springer Science and Business Media LLC, Vol. 500, No. 7462 ( 2013-8), p. 345-349
    Type of Medium: Online Resource
    ISSN: 0028-0836 , 1476-4687
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    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2013
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  • 6
    Online Resource
    Online Resource
    Proceedings of the National Academy of Sciences ; 2017
    In:  Proceedings of the National Academy of Sciences Vol. 114, No. 10 ( 2017-03-07)
    In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 114, No. 10 ( 2017-03-07)
    Abstract: Human Mas-related G protein-coupled receptor X1 (MRGPRX1) is a promising target for pain inhibition, mainly because of its restricted expression in nociceptors within the peripheral nervous system. However, constrained by species differences across Mrgprs , drug candidates that activate MRGPRX1 do not activate rodent receptors, leaving no responsive animal model to test the effect on pain in vivo. Here, we generated a transgenic mouse line in which we replaced mouse Mrgprs with human MrgprX1 . This humanized mouse allowed us to characterize an agonist [bovine adrenal medulla 8–22 (BAM8–22)] and a positive allosteric modulator (PAM), ML382, of MRGPRX1. Cellular studies suggested that ML382 enhances the ability of BAM8–22 to inhibit high-voltage-activated Ca 2+ channels and attenuate spinal nociceptive transmission. Importantly, both BAM8–22 and ML382 effectively attenuated evoked, persistent, and spontaneous pain without causing obvious side effects. Notably, ML382 by itself attenuated both evoked pain hypersensitivity and spontaneous pain in MrgprX1 mice after nerve injury without acquiring coadministration of an exogenous agonist. Our findings suggest that humanized MrgprX1 mice provide a promising preclinical model and that activating MRGPRX1 is an effective way to treat persistent pain.
    Type of Medium: Online Resource
    ISSN: 0027-8424 , 1091-6490
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    Language: English
    Publisher: Proceedings of the National Academy of Sciences
    Publication Date: 2017
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  • 7
    Online Resource
    Online Resource
    Proceedings of the National Academy of Sciences ; 2008
    In:  Proceedings of the National Academy of Sciences Vol. 105, No. 37 ( 2008-09-16), p. 14157-14162
    In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 105, No. 37 ( 2008-09-16), p. 14157-14162
    Abstract: New neurons are continuously generated in restricted regions of the adult mammalian brain. Although these adult-born neurons have been shown to receive synaptic inputs, little is known about their synaptic outputs. Using retrovirus-mediated birth-dating and labeling in combination with serial section electron microscopic reconstruction, we report that mossy fiber en passant boutons of adult-born dentate granule cells form initial synaptic contacts with CA3 pyramidal cells within 2 weeks after their birth and reach morphologic maturity within 8 weeks in the adult hippocampus. Knockdown of Disrupted-in-Schizophrenia-1 (DISC1) in newborn granule cells leads to defects in axonal targeting and development of synaptic outputs in the adult brain. Together with previous reports of synaptic inputs, these results demonstrate that adult-born neurons are fully integrated into the existing neuronal circuitry. Our results also indicate a role for DISC1 in presynaptic development and may have implications for the etiology of schizophrenia and related mental disorders.
    Type of Medium: Online Resource
    ISSN: 0027-8424 , 1091-6490
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    Language: English
    Publisher: Proceedings of the National Academy of Sciences
    Publication Date: 2008
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  • 8
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 378, No. 6616 ( 2022-10-14)
    Abstract: Pyroptosis is a proinflammatory form of programmed cell death characterized by membrane pore formation that allows the release of intracellular inflammatory mediators, a process that is elicited by the inflammasome-mediated cleavage and activation of gasdermin D (GSDMD). Growing evidence supports a critical role for pyroptosis in the control of infections by mammalian hosts, but how pathogens evade this immune response remains largely unexplored. RATIONALE Mycobacterium tuberculosis (Mtb), an ancient pathogen that causes tuberculosis (TB), has developed numerous intracellular survival strategies to evade host immunity and to drive the occurrence and development of TB. One notable feature evolved by Mtb is a set of eukaryotic-like effectors, but their host targets and regulatory roles in pathogen–host interactions remain largely unclear. In this study, we sought to identify the key pathogenic regulators of inflammasome-pyroptosis pathways from Mtb eukaryotic-like effectors, information that could improve our understanding of TB pathogenesis and provide potential targets for novel anti-TB treatment. RESULTS We examined the whole genome of Mtb to predict its secreted eukaryotic-like proteins possessing eukaryotic-like motifs or domains that might target host factors directly. These Mtb effector proteins were then subjected to further experimental analyses using an inflammasome reconstitution system for screening inhibitors of inflammasome-pyroptosis pathways. Out of 201 predicted Mtb-secreted eukaryotic proteins, six Mtb proteins (Rv0153c, Rv0561c, Rv0824c, Rv0861c, Rv1515c, and Rv1679) exhibited strong inhibitory effects on both NOD-like receptor protein 3 (NLRP3) and absent in melanoma 2 (AIM2) inflammasome pathways. Among these proteins, PtpB (i.e., Rv0153c) was most abundantly secreted by Mtb during infection. We thus focused on PtpB and further confirmed its inhibitory effect on AIM2 or NLRP3 inflammasome-mediated interleukin-1β (IL-1β) secretion. Subsequent experiments demonstrated that PtpB inhibited gasdermin D (GSDMD)–dependent cytokine release and pyroptosis to promote Mtb intracellular survival in macrophages. Mechanistically, Mtb-secreted PtpB could target and dephosphorylate host plasma membrane phosphatidylinositol-4-monophosphate (PI4P) and phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P 2 ] to inhibit the membrane localization of the N-terminal cleavage fragment of GSDMD (GSDMD-N), thus preventing GSDMD-mediated immune responses. This phosphoinositide phosphatase activity requires binding of PtpB to ubiquitin. Accordingly, disrupting phospholipid phosphatase activity or the unusual ubiquitin-interacting motif (UIM)–like domain of PtpB markedly enhanced host innate immune responses and reduced intracellular pathogen survival in mice in a GSDMD-dependent manner. CONCLUSION We demonstrate that GSDMD-mediated pyroptosis and inflammatory cytokine release play a critical role in host anti-infection immunity, which is counteracted by Mtb effector protein PtpB. Our data reveal a role of the pathogen-derived phospholipid phosphatase in the regulation of GSDMD-dependent pyroptosis and cytokine releases, extending our understanding of the elaborate regulatory mechanism of cellular inflammasome-pyroptosis signaling pathways during pathogen infection. The present study also presents a strategy by which pathogens hijack ubiquitin to inhibit host pyroptosis by altering the phospholipid composition of the host membrane. Our discovery of the PtpB UIM-like domain, which is not homologous to any human protein, may provide potential selectivity for the development of anti-TB therapies. M. tuberculosis PtpB hijacks host ubiquitin to inhibit pyroptosis through altering host membrane phospholipid composition. M. tuberculosis –secreted phospholipid phosphatase PtpB is activated by interacting with host ubiquitin through a UIM-like domain, by which it dephosphorylates host plasma membrane phosphoinositides PI4P and PI(4,5)P 2 to inhibit the membrane targeting of GSDMD-N, thus disrupting the inflammatory cytokine release and pyroptosis upon activation of M. tuberculosis infection–triggered inflammasome activation in macrophages.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
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    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2022
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  • 9
    In: Nature, Springer Science and Business Media LLC, Vol. 583, No. 7818 ( 2020-07-30), p. 699-710
    Abstract: The human and mouse genomes contain instructions that specify RNAs and proteins and govern the timing, magnitude, and cellular context of their production. To better delineate these elements, phase III of the Encyclopedia of DNA Elements (ENCODE) Project has expanded analysis of the cell and tissue repertoires of RNA transcription, chromatin structure and modification, DNA methylation, chromatin looping, and occupancy by transcription factors and RNA-binding proteins. Here we summarize these efforts, which have produced 5,992 new experimental datasets, including systematic determinations across mouse fetal development. All data are available through the ENCODE data portal ( https://www.encodeproject.org ), including phase II ENCODE 1 and Roadmap Epigenomics 2 data. We have developed a registry of 926,535 human and 339,815 mouse candidate cis -regulatory elements, covering 7.9 and 3.4% of their respective genomes, by integrating selected datatypes associated with gene regulation, and constructed a web-based server (SCREEN; http://screen.encodeproject.org ) to provide flexible, user-defined access to this resource. Collectively, the ENCODE data and registry provide an expansive resource for the scientific community to build a better understanding of the organization and function of the human and mouse genomes.
    Type of Medium: Online Resource
    ISSN: 0028-0836 , 1476-4687
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    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2020
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  • 10
    In: Nature, Springer Science and Business Media LLC, Vol. 605, No. 7909 ( 2022-05-12), p. E3-E3
    Type of Medium: Online Resource
    ISSN: 0028-0836 , 1476-4687
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    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2022
    detail.hit.zdb_id: 120714-3
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    SSG: 11
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