GLORIA

GEOMAR Library Ocean Research Information Access

Your email was sent successfully. Check your inbox.

An error occurred while sending the email. Please try again.

Proceed reservation?

Export
  • 1
    Online Resource
    Online Resource
    Elsevier BV ; 2016
    In:  Forensic Science International Vol. 264 ( 2016-07), p. 56-62
    In: Forensic Science International, Elsevier BV, Vol. 264 ( 2016-07), p. 56-62
    Type of Medium: Online Resource
    ISSN: 0379-0738
    RVK:
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2016
    detail.hit.zdb_id: 2006235-7
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 2
    In: Immunologic Research, Springer Science and Business Media LLC, Vol. 64, No. 1 ( 2016-2), p. 55-63
    Type of Medium: Online Resource
    ISSN: 0257-277X , 1559-0755
    RVK:
    RVK:
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2016
    detail.hit.zdb_id: 2079303-0
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 3
    Online Resource
    Online Resource
    Cold Spring Harbor Laboratory ; 2007
    In:  Genome Research Vol. 17, No. 10 ( 2007-10), p. 1414-1419
    In: Genome Research, Cold Spring Harbor Laboratory, Vol. 17, No. 10 ( 2007-10), p. 1414-1419
    Abstract: By surveying a filtered, high-quality set of SNPs in the human genome, we have found that SNPs positioned 1, 2, 4, 6, or 8 bp apart are more frequent than SNPs positioned 3, 5, 7, or 9 bp apart. The observed pattern is not restricted to genomic regions that are known to cause sequencing or alignment errors, for example, transposable elements (SINE, LINE, and LTR), tandem repeats, and large duplicated regions. However, we found that the pattern is almost entirely confined to what we define as “periodic DNA.” Periodic DNA is a genomic region with a high degree of periodicity in nucleotide usage. It turned out that periodic DNA is mainly small regions (average length 16.9 bp), widely distributed in the genome. Furthermore, periodic DNA has a 1.8 times higher SNP density than the rest of the genome and SNPs inside periodic DNA have a significantly higher genotyping error rate than SNPs outside periodic DNA. Our results suggest that not all SNPs in the human genome are created by independent single nucleotide mutations, and that care should be taken in analysis of SNPs from periodic DNA. The latter may have important consequences for SNP and association studies.
    Type of Medium: Online Resource
    ISSN: 1088-9051
    RVK:
    Language: English
    Publisher: Cold Spring Harbor Laboratory
    Publication Date: 2007
    detail.hit.zdb_id: 1483456-X
    SSG: 12
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 4
    In: Blood, American Society of Hematology, Vol. 122, No. 21 ( 2013-11-15), p. 5262-5262
    Abstract: Prior studies have established that ALL can be present at birth. However, such inborn hematological malignancies are rare and contrast to the far more frequent hematological (pre-) malignancies, which are typically found in patients in their sixties or later. Thus, the point mutation V617F in the JAK2 gene in myeloid cells has been found to be a significant player for many chronic myeloproliferations, e.g. polycythemia vera (PCV). In fact, its prevalence in the elderly population is as high as 0.1%. In addition, studies in B-cell derived chronic lymphocytic leukemia (B-CLL) has found that this malignancy is preceded by a clinically silent phase of monoclonal B-cell lymphocytosis (MBL) in the majority of patients. In contrast to leukemic childhood twins, where a high (10-15%) concordance is thought to reflect the inborn initiating mutations, much less is known about the balance between genetics and environment for the pre-leukemic conditions mentioned above. This report relates to a pair of homozygous twins, who came to our attention when they were 73 years old in 2009. Twin A presented at a hematological department for the first time in 2005 at the age of 70 years. He had experienced a 1 h episode of amaurosis fugax and during a neurological workup mild thrombocytopenia (126x109/L), increased hematocrit (0.52) and lymphocytosis (7.95x109/L) without abnormalities in other leukocyte subsets. Immunophenotyping at this time revealed CD5/CD19/CD23+ monoclonal B-cells at the 7-8 109/L levels, but no lymphadenopathy or organomegaly. While no therapy for the latter cells has been instituted, venesectio 3-4 times /year has been deemed necessary to keep the hematocrit below 0.45. Twin B went for a checkup at his GP subsequent to the brother experiencing the above episode. He, too, was diagnosed with lymphocytosis, but his hematocrit was only slightly increased levels. No intervention has been instituted in this twin. While the extent of lymphocytosis in twin A is consistently between 5 and 10 bill/L, that of twin B remains below 5 bill/L. Remarkably, the B-cell light chain expression differed between these identical twins, with twin A being kappa- and twin B lambda positive. High-resolution arrayCGH on blood sample revealed that twin A had microdeletions on chromosome 2p11.2 involving the Ig kappa gene cluster, on chromosome 7p11.2 involving the processed pseudogene ENST00000448242, chromosome 13 involving the RB gene, and on chromosome 17 involving the azacytidine induced gene. In contrast, twin B exhibited no clear aberrations by arrayCGH. For both twins, we have performed whole exome sequencing using FACS purified T-lymphocytes as surrogate germline cells and compared to whole the BM MNC exome in order to identify mutated genes. This analysis revealed (Figure) that twin A predominantly displayed mutations, which have been related to myeloid cells in the literature, while twin B mainly exhibited alterations in genes linked to lymphoid cells. In fact, only the three genes, NTSR2, ATP2C2 and ACOX3, were altered in the BM cells and present on both twins, neither of these readily explaining the shared monoclonal B-cell disorders. Interestingly, mutations in the genes TET2 and RUNX1, which have been closely related to myeloid cells, were solely found in twin A. In conclusion, we have described a pair of homozygous twins who in their seventies were diagnosed with benign monoclonal B-cell lymphocytosis (MBL) with different B-cell light chain expression. Additionally, one twin, but not the other, was found to be JAK2+ with clear polycythemia vera (PCV) features requiring frequent phlebotomies. Extensive molecular analyses including whole exome sequencing have revealed that while both twins harbored point mutation in NTSR2, ATP2C2 and ACOX3, the mutations displayed in twin A with PCV were predominantly genetic abnormalities that have been associated with the myeloid cells underlining that extensive alterations in myelopoiesis have taken place postnatally in this twin. Thus, for these two pre-leukemic conditions, while predisposition to MBL seems to be prenatal, that related to JAK2 is postnatal. Ongoing studies are aimed at discovering a link between the 3 shared genes and B-cell development in an effort to link them to BML development. Disclosures: No relevant conflicts of interest to declare.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
    RVK:
    RVK:
    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2013
    detail.hit.zdb_id: 1468538-3
    detail.hit.zdb_id: 80069-7
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 5
    In: Genome Research, Cold Spring Harbor Laboratory, Vol. 27, No. 9 ( 2017-09), p. 1597-1607
    Abstract: Genes in the major histocompatibility complex (MHC, also known as HLA) play a critical role in the immune response and variation within the extended 4-Mb region shows association with major risks of many diseases. Yet, deciphering the underlying causes of these associations is difficult because the MHC is the most polymorphic region of the genome with a complex linkage disequilibrium structure. Here, we reconstruct full MHC haplotypes from de novo assembled trios without relying on a reference genome and perform evolutionary analyses. We report 100 full MHC haplotypes and call a large set of structural variants in the regions for future use in imputation with GWAS data. We also present the first complete analysis of the recombination landscape in the entire region and show how balancing selection at classical genes have linked effects on the frequency of variants throughout the region.
    Type of Medium: Online Resource
    ISSN: 1088-9051 , 1549-5469
    RVK:
    Language: English
    Publisher: Cold Spring Harbor Laboratory
    Publication Date: 2017
    detail.hit.zdb_id: 1483456-X
    SSG: 12
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 6
    Online Resource
    Online Resource
    Wiley ; 2020
    In:  Journal of Forensic Sciences Vol. 65, No. 3 ( 2020-05), p. 833-839
    In: Journal of Forensic Sciences, Wiley, Vol. 65, No. 3 ( 2020-05), p. 833-839
    Abstract: Sharp force trauma is a common homicide method. The weapon is typically a knife, which is easily accessible and does not require special skills. We have analyzed all 471 sharp force homicides in Denmark during 1992–2016 with special focus on aspects that are relevant to forensic pathologists, including the distribution of wounds and organ injuries. Most homicides were committed inside with a kitchen knife. The front left thorax was the most common area to be affected by sharp force trauma. In 18.9% of the victims, there was only one sharp injury, the majority on the thorax. The most common trajectory for stab wounds was directly posterior with no deviation to the sides or up/down followed by directly anterior. The heart (including pericardium) and lungs (including hemo‐ and pneumothorax) had injuries in more than 75% of the victims. 67% of victims were males. Female victims had more sharp force injuries and defense wounds than male victims. Most females were killed in domestic homicides (73.7%), most commonly in partner killings (56.4%). In contrast, many male victims were killed in a setting of nightlife/intoxication (34.0%) most by a friend/acquaintance delivering a few stab wounds. The results clearly show strong sex differences in both victims and offenders. This could be useful for shaping policies and public opinion, and as a route for understanding the developments in interpersonal violence. In the narrow setting of death investigation, our results will provide an evidence‐based approach to understanding the injury patterns in sharp force homicide.
    Type of Medium: Online Resource
    ISSN: 0022-1198 , 1556-4029
    URL: Issue
    RVK:
    Language: English
    Publisher: Wiley
    Publication Date: 2020
    detail.hit.zdb_id: 2026357-0
    SSG: 2,1
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 7
    Online Resource
    Online Resource
    Elsevier BV ; 2016
    In:  Forensic Science International Vol. 269 ( 2016-12), p. 42-49
    In: Forensic Science International, Elsevier BV, Vol. 269 ( 2016-12), p. 42-49
    Type of Medium: Online Resource
    ISSN: 0379-0738
    RVK:
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2016
    detail.hit.zdb_id: 2006235-7
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 8
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 76, No. 19 ( 2016-10-01), p. 5894-5906
    Abstract: Greater knowledge concerning tumor heterogeneity and clonality is needed to determine the impact of targeted treatment in the setting of bladder cancer. In this study, we performed whole-exome, transcriptome, and deep-focused sequencing of metachronous tumors from 29 patients initially diagnosed with early-stage bladder tumors (14 with nonprogressive disease and 15 with progressive disease). Tumors from patients with progressive disease showed a higher variance of the intrapatient mutational spectrum and a higher frequency of APOBEC-related mutations. Allele-specific expression was also higher in these patients, particularly in tumor suppressor genes. Phylogenetic analysis revealed a common origin of the metachronous tumors, with a higher proportion of clonal mutations in the ancestral branch; however, 19 potential therapeutic targets were identified as both ancestral and tumor-specific alterations. Few subclones were present based on PyClone analysis. Our results illuminate tumor evolution and identify candidate therapeutic targets in bladder cancer. Cancer Res; 76(19); 5894–906. ©2016 AACR.
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
    RVK:
    RVK:
    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2016
    detail.hit.zdb_id: 2036785-5
    detail.hit.zdb_id: 1432-1
    detail.hit.zdb_id: 410466-3
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 9
    In: Journal of Clinical Microbiology, American Society for Microbiology, Vol. 56, No. 7 ( 2018-07)
    Abstract: Aggregatibacter species are commensal bacteria of human mucosal surfaces that are sometimes involved in serious invasive infections. During the investigation of strains cultured from various clinical specimens, we encountered a coherent group of 10 isolates that could not be allocated to any validly named species by phenotype, mass spectrometry, or partial 16S rRNA gene sequencing. Whole-genome sequencing revealed a phylogenetic cluster related to but separate from Aggregatibacter aphrophilus . The mean in silico DNA hybridization value for strains of the new cluster versus A. aphrophilus was 56% (range, 53.7 to 58.0%), whereas the average nucleotide identity was 94.4% (range, 93.9 to 94.8%). The new cluster exhibited aggregative properties typical of the genus Aggregatibacter . Key phenotypic tests for discrimination of the new cluster from validly named Aggregatibacter species are alanine-phenylalanine-proline arylamidase, N -acetylglucosamine, and β-galactosidase. The name Aggregatibacter kilianii is proposed, with PN_528 (CCUG 70536 T or DSM 105094 T ) as the type strain.
    Type of Medium: Online Resource
    ISSN: 0095-1137 , 1098-660X
    RVK:
    Language: English
    Publisher: American Society for Microbiology
    Publication Date: 2018
    detail.hit.zdb_id: 1498353-9
    SSG: 12
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 10
    In: Genomics, Elsevier BV, Vol. 86, No. 6 ( 2005-12), p. 685-691
    Type of Medium: Online Resource
    ISSN: 0888-7543
    RVK:
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2005
    detail.hit.zdb_id: 1468023-3
    SSG: 12
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
Close ⊗
This website uses cookies and the analysis tool Matomo. More information can be found here...