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  • 1
    In: Blood, American Society of Hematology, Vol. 119, No. 15 ( 2012-04-12), p. 3413-3419
    Abstract: Data on minimal residual disease (MRD) monitoring in acute promyelocytic leukemia (APL) are available only in the context of conventional all-trans retinoic acid plus chemotherapy regimens. It is recognized that the kinetics of leukemia clearance is different with the use of arsenic trioxide (ATO) in the treatment of APL. We undertook a prospective peripheral blood RT-PCR–based MRD monitoring study on patients with APL treated with a single agent ATO regimen. A total of 151 patients were enrolled in this study. A positive RT-PCR reading at the end of induction therapy was significantly associated on a multivariate analysis with an increased risk of relapse (relative risk = 4.9; P = .034). None of the good risk patients who were RT-PCR negative at the end of induction relapsed. The majority of the relapses (91%) happened within 3 years of completion of treatment. After achievement of molecular remission, the current MRD monitoring strategy was able to predict relapse in 60% of cases with an overall sensitivity and specificity of 60% and 93.2%, respectively. High-risk group patients and those that remain RT-PCR positive at the end of induction are likely to benefit from serial MRD monitoring by RT-PCR for a period of 3 years from completion of therapy.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2012
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  • 2
    In: Blood, American Society of Hematology, Vol. 138, No. Supplement 1 ( 2021-11-05), p. 2338-2338
    Abstract: In the setting of clinical trials, high cure rates have been reported for acute promyelocytic leukemia (APL) with the chemotherapy-free combination of arsenic trioxide (ATO) and all-trans retinoic acid (ATRA) for low-intermediate risk disease, and with the addition of gemtuzumab ozogamicin or minimal anthracycline for high-risk disease. Despite clear in-vitro synergy between ATO and ATRA, most clinical trial protocols in APL have not used these drugs concurrently beyond induction. There is limited real world data on the use of chemotherapy-free combination of ATO and ATRA with minimal anthracycline use in the treatment of APL, especially in the high risk group. We did a retrospective analysis of the clinical outcomes of patients with newly diagnosed APL treated at our center from January 2015 to May 2020 using concurrent ATO, ATRA and minimal anthracycline in a risk stratified manner. The data was frozen and analyzed as on 1st June 2021. During the study period, 167 patients were diagnosed to have APL at our hospital. Of these, we excluded 5 patients who had presented with relapsed disease and 28 patients who were treated with single agent ATO. The remaining 134 patients were treated with a uniform protocol as summarized in Figure 1a. Figure 1b shows the KM plot for EFS (2 year: 90.8±2.5%) for these 134 patients. For analysis of regimen safety and efficacy, we excluded patients who wished to pursue treatment elsewhere within the first 1 week of treatment (n=7), and patients who had severe infections or life-threatening bleeding at presentation or before therapy initiation and subsequently died (n=4). Thus, a total of 123 patients with newly diagnosed APL were included for further analysis. The median age was 35 years (IQR: 24 to 45 years). Forty-six (37.4%) were females. The median duration of symptoms prior to admission was 14 days (IQR: 7 to 28 days). Sixty-one (49.6%) had high risk APL while the remaining 62 (50.4%) had low-intermediate risk APL. During induction, 28 (22.7%) patients had major bleeding while 5 (4%) patients developed major thrombosis. Sixty-seven (55%) patients had at least one documented infection during induction therapy. The median number of packed red cell concentrates, fresh frozen plasma, platelet rich concentrates and cryoprecipitates transfused during induction therapy was 5 (IQR: 3 to 6.5), 10 (IQR: 3 to 30), 40 (IQR: 23 to 55) and 6 (IQR: 0 to 18) respectively. Nineteen (15.4%) patients developed differentiation syndrome; all were treated with steroids, 8 required transient cessation of treatment and 6 required intensive care. Eight (6.5%) patients died during induction. During induction, grade 3 hepatotoxicity was noted in 8 (6.5%) patients, 10 (8.1%) patients had ATRA related headache or benign intracranial hypertension of which 5 required transient cessation of ATRA, while 11 (8.9%) patients had transient QTc prolongation of which 6 required transient cessation of ATO. Seventeen (13.8%) patients developed symptomatic sensory neuropathy requiring treatment. None required permanent discontinuation of therapy. At a median follow up of 854 days, there were 2 (1.6%) hematologic relapses and no deaths beyond induction therapy. The 2-year OS and EFS for the cohort (n=123) are 93.4% ± 2.3% and 91.6% ± 2.6% respectively (Figure 1c). Two (1.6%) patients have developed second malignancies. In a real world setting, concurrently administered ATO and ATRA with minimal anthracycline use results in excellent long term survival, even in the high risk group. Early deaths due to delayed presentation with infections and life threatening bleeding remain an unmet need for future research along with the need for strategies to reduce treatment-related toxicities. Figure 1 Figure 1. Disclosures Mathews: Christian Medical College: Patents & Royalties: US 2020/0345770 A1 - Pub.Date Nov.5, 2020; AML: Other: Co-Inventor.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2021
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  • 3
    In: Blood, American Society of Hematology, Vol. 138, No. Supplement 1 ( 2021-11-05), p. 2187-2187
    Abstract: Objective: Fanconi anaemia is a genotypically heterogeneous disease. A fast and reliable genetic diagnosis method helps is important for the clinical care of these patients. The objective of this study was to establish a strategy for expeditious molecular diagnosis for the Indian FA patients. Methods: Exome sequencing was performed for 119 FA patients on Illumina HiSeq X system and the data was analysed by Sentieon (v201808.01) to identify germline variants. Single nucleotide variants (SNVs) with an allele frequency of & lt;3% in various population databases including the Indian population database were analysed and annotated using an in-house pipeline. Copy number variants (CNVs) were detected using ExomeDepth (v1.1.10). Long amplicon next-generation sequencing was performed for FANCA and FANCG genes. Gene dosage analysis was performed for the deletions identified by WES in the FANCT/UBE2T gene. Sanger sequencing was performed for the selected variants identified by WES. Results: SNVs associated with FA were identified in heterozygous states in 93 (78%) patients. Of the remaining 20 patients, 8 had homozygous deletions, and twelve were compound heterozygous with deletions and SNVs. We detected deletions in 20 patients: 7 with heterozygous and 12 with homozygous deletions in FANCA, and one with a homozygous deletion in FANCT (UBE2T). MLPA confirmed the deletions in the FANCA gene. The homozygous deletion in the FANCT gene was confirmed by the lack of amplification by PCR using the primers binding to the deleted region. By combining the SNVs and deletions, disease-causing genotypes were identified in 113 of 119 (95%) patients. A large number of our patients (81.5 %) were homozygous (Figure) due to the high rate of consanguinity in the population. FANCA was found to be the most frequently mutated gene in (57.5%) while mutations in FANCG gene accounted for 14.2% of our patients. FANCC mutations were found at a very low frequency (1.8%) in our patients. Although mutations in FANCL are rare in all the populations, 24 (21.2%) patients with FANCL mutations were identified in our study. A previously reported synonymous splicing mutation FANCL c.1092G & gt;A;p.K364= was found in homozygous state in 22 (19.5%) patients. Two other FANCL mutations identified includes a missense mutation c.827C & gt;T; p.Pro281Leu in the homozygous state in one patient and a nonsense mutation c.997C & gt;T; p.Gln333Ter in the compound heterozygous state with the common FANCL c.1092G & gt;A;p.K364= mutation in another patient. Mutations in rarely mutated FA genes included 1 patient each in FANCT/UBE2T and FANCI and two each in FANCJ/BRIP1 and FANCF gene. Based on the comprehensive genotype analysis, we could design an algorithm for FA in the Indian population. ~20% of the FA patients who have FANCL c.1092G & gt;A;p.K364= mutation can be diagnosed by Sanger sequencing. MLPA can detect FANCA deletions (16.5% of the overall mutations). The results from these two tests can be obtained in 48 hours. For those who are negative for the mutations by these two methods, LA-NGS can detect SNVs in the FANCA and FANCG genes, which constitute & gt;55% of the FA mutations in the population. We have tested this algorithm for expedited molecular diagnosis in 27 FA patients and found that the disease genotypes could be established in 94% of the patients in less than two weeks. Conclusion/Clinical applicability: Exome sequencing identified several novel mutations in the FA pathway genes in the FA patients. A cost-effective and time-saving algorithm was explicitly established for molecular diagnosis of FA in the Indian population. Figure 1 Figure 1. Disclosures No relevant conflicts of interest to declare.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2021
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  • 4
    In: British Journal of Haematology, Wiley, Vol. 192, No. 2 ( 2021-01), p. 292-299
    Abstract: The standard of care for patients with acute promyelocytic leukaemia (APL) relapsing after front‐line treatment with arsenic trioxide (ATO)‐based regimens remains to be defined. A total of 67 patients who relapsed after receiving ATO‐based up‐front therapy and were also salvaged using an ATO‐based regimen were evaluated. The median (range) age of patients was 28 (4–54) years. While 63/67 (94%) achieved a second molecular remission (MR) after salvage therapy, three (4·5%) died during salvage therapy. An autologous stem cell transplant (auto‐SCT) was offered to all patients who achieved MR, 35/63 (55·6%) opted for auto‐SCT the rest were administered an ATO + all‐ trans retinoic acid maintenance regimen. The mean (SD) 5‐year Kaplan–Meier estimate of overall survival and event‐free survival of those who received auto‐SCT versus those who did not was 90·3 (5·3)% versus 58·6 (10·4)% ( P  = 0·004), and 87·1 (6·0)% versus 47·7 (10·3)% ( P  = 0·001) respectively. On multivariate analysis, failure to consolidate MR with an auto‐SCT was associated with a significantly increased risk of relapse [hazard ratio (HR) 4·91, 95% confidence interval (CI) 1·56–15·41; P  = 0·006]. MR induction with ATO‐based regimens followed by an auto‐SCT in children and young adults with relapsed APL who were treated with front‐line ATO‐based regimens was associated with excellent long‐term survival.
    Type of Medium: Online Resource
    ISSN: 0007-1048 , 1365-2141
    URL: Issue
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    Language: English
    Publisher: Wiley
    Publication Date: 2021
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  • 5
    In: British Journal of Haematology, Wiley, Vol. 189, No. 2 ( 2020-04), p. 269-278
    Abstract: Arsenic trioxide (ATO)‐based regimens are the standard of care for treating acute promyelocytic leukaemia (APL) and have replaced chemotherapy‐based approaches. However, the cost of “patented” ATO is prohibitive because of patent rights. “Generic” ATO has been used in a few countries, but its implications for health resource utilization (HRU) and cost of treatment are unknown. We hypothesized that treating APL patients using generic ATO (APL‐ATO) will be cost effective compared to the chemotherapy‐based regimen (APL‐CT). In a single‐centre retrospective study, we used a bottom‐up costing method to compare the direct medical cost of treatment and HRU between APL‐ATO and APL‐CT. These costs and the survival and relapse probabilities were imputed in a three‐state Markov decision model to estimate the cost effectiveness of APL‐ATO compared to APL‐CT. The mean cost of treatment for APL‐ATO ( n  = 30, $8500 ± 2078) was significantly less than for APL‐CT ( n  = 30, $22 600 ± 5528) ( P   〈  0·001). APL‐ATO reduced hospitalization, antibiotic and antifungal usage ( P   〈  0·001). In the Markov model, five‐year treatment costs were significantly lower for APL‐ATO ($11 131) than for APL‐CT ($17 926) ( P   〈  0·001). Treatment cost and health resource utilization were significantly lower for generic ATO‐treated APL patients compared to the chemotherapy‐based regimen.
    Type of Medium: Online Resource
    ISSN: 0007-1048 , 1365-2141
    URL: Issue
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    Language: English
    Publisher: Wiley
    Publication Date: 2020
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  • 6
    In: Blood, American Society of Hematology, Vol. 124, No. 21 ( 2014-12-06), p. 2938-2938
    Abstract: Fanconi anemia (FA) is an inherited bone marrow failure syndrome caused by a defect in one of the DNA repair pathways. FA exhibits a high degree of clinical heterogeneity and the exact molecular basis of the difference in the phenotypes has not been well understood. Study of this disease in geographic regions with high consanguinity will provide valuable insights in genotype-phenotype correlation and the genetic and environmental modifiers of this disease. We carried out a comprehensive clinical and molecular analysis in 101 patients with pancytopenia, with age 〈 20 years, seen at the department of Haematology, Christian Medical College, India between 2009 and 2014. Seventy six patients had characteristic physical abnormalities of FA, of which perioral hyperpigmentation (42%) was the most common in these patients. We also included 25 patients with aplastic anemia as controls. The median age at diagnosis was 11 years (range 4-30) and sex ratio between males to females was 3:2. Chromosome breakage analysis (CBA) was performed on peripheral blood samples at diagnosis. Forty metaphases each from patient and normal control were assessed for sensitivity to Mitomycin C as per the protocol published in Mayo Clinic Proceedings (1997). CBA score greater than the cut off value of 40 was seen in 63% (n=48/76) of the patients. However, 23% (n=18/76) had ambiguous or borderline score (score 30-40; n= 12, score 20-30; n=4, score 〈 10-20; n=2) and 13% (n=10/76) of patients were not sensitive to Mitomycin C. The control group did not display sensitivity or had mild degree of breakage (CBA score: 4.1-20). FANCD2 ubiquitination analysis of these patients with physical abnormalities in peripheral blood and fibroblasts showed absence of ubiquitination in 69 (90%) of the patients while the control group had normal ubiquitination pattern. To evaluate mosaicism, both peripheral blood and fibroblast samples were analyzed in 59 patients and FANCD2 ubiquitination was defective in both tissues in 55 (93%) patients. In 3 patients, FANCD2 ubiquitination was defective in fibroblasts, but not in peripheral blood indicative of mosaicism of this disease in these patients. Three patients had a normal ubiquitination pattern but had high CBA score and this might be due to mutations in any of the genes that function in the pathway downstream of FANCD2 ubiquitination and requires further evaluation. Four patients who had physical features suggestive of FA were negative by both CBA and FANCD2 western blot. In the control group, both peripheral blood and fibroblast samples were available in 19 patients all of which showed normal FANCD2 ubiquitination. In order to further characterize the FA subtypes, we generated lentiviral vectors to express FANCA, FANCC and FANCG genes for complementation assay. Fibroblasts from 20 patients were transduced with lentiviral FANCA and in 17 (85%) FANCD2 ubiquitination could be restored suggesting a high frequency of FANCA defects in Indian population. Mutation screening of FANCA in a subset of patients showed large deletions in five of which three are novel (ex 10_37 del,ex 6_14 del and ex 1_4 del). There was a deletion of two nucleotides resulting in a frameshift mutation in one patient (c.3760_3761delGA) and a missense mutation (c.2786A 〉 C) in another. Our data suggests that FANCD2 ubiquitination analysis in conjunction with CBA is useful for the diagnosis of FA and detection of mosaicism and the complementation analysis shows high frequency of FANCA defects in patients with FA in Indian population. Disclosures No relevant conflicts of interest to declare.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2014
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  • 7
    In: Blood, American Society of Hematology, Vol. 120, No. 21 ( 2012-11-16), p. 1390-1390
    Abstract: Abstract 1390 We undertook a comprehensive prospective study to compare the clinical, cellular and molecular differences between newly diagnosed (ND) and relapsed (Rel) acute promyelocytic leukemia (APL) patients. 98 ND cases and 28 Rel cases (5 second relapses) were enrolled in this study. 85 (86.7%) of the ND cases were treated with a single agent arsenic trioxide (ATO) regimen. Five (17.8%) Rel cases were discharged against medical advice, the rest were treated with a combination of ATO, ATRA and chemotherapy and advised a SCT in molecular remission. Table 1 summarizes the major clinical differences between ND and Rel cases. Rel patients had a significantly lower WBC counts and higher platelet counts at diagnosis. Coagulopathy was less prominent in Rel cases as evident by the significantly lower number of cases with IC bleeds in this group and the significantly lower platelet rich concentrate requirement in induction (Table 1). Immunophenotyping of the malignant promyelocytes and blasts revealed a significantly increased CD34 expression and significantly reduced CD13 and CD38 expression in Rel cases (Figure 1A). Cytogenetic (CTG) analysis revealed that relapsed patients had a trend to greater proportion of cases with additional karyotypic abnormalities (Table 1). Evaluation of the malignant promyelocytes and blasts' capacity to concentrate ATO intracellularly as shown in Figure 1B (level of ATO in 107 cells after 24 hour culture with 0.5μM ATO was measured using Atomic Absorption Spectrometry) was not significantly different. Similarly an in-vitro assay of cytotoxicity of ATO (IC-50 measured using standard MTT cell viability assay) was not significantly different between ND and Rel cases (median IC-50= 5.64 ± 3.8 vs. 4.59±4.5 μM; P= 0.28). We had previously noted a protective effect of stromal cell co-culture on the apoptotic action of ATO on malignant promyelocytes. We compared this effect in newly diagnosed and relapsed cases and noted that this protective effect was seen in both groups and was not significantly different (Figure 1C). A microarray expression profile on 8 randomly selected ND and 8 Rel cases was done. Total RNA extracted from BMMNCs with 90% promyelocytes + blasts and above (enriched when required) was used and microarray was performed with a standard one color Agilent–44K array platform. Differentially regulated genes were clustered using hierarchical clustering based on Pearson coefficient correlation, and 1744 genes were 2 fold and above differentially expressed between at relapse and at diagnosis (Figure 1D). 26 differentially expressed genes were validated by RQ-PCR using ABI Taqman assay system (data not shown). Differential gene list were classified based on functional category and pathways using Biointerpreter Software. The most prominent differentially regulated pathways were cell adhesion, cell survival, cell cycle, immune regulation, stem cell regulation, ubiquitinproteasome degradation system and ion transporters. The heat map of the one such prominent pathway (adhesion) is shown in the figure 1E. In conclusion, the Rel cases have significant clinical, immunophenotypic and molecular differences when compared to the newly diagnosed cases. The potential reason for relapse and poor prognosis in the Rel group appears to be multi-factorial. Exploring the pathways and genes differentially regulated between these two groups may provide insights in identifying potentially novel therapeutic targets. Preliminary in-vitro data from our centre, consistent with these observations, has shown that stromal cell adhesion mediates resistance to ATO and that inhibition of this by drugs such as bortezomib can overcome it. Table 1. Comparison of the baseline demographic data of newly diagnosed and relapsed acute promyelocytic leukemia patients Demographic Parameters Newly Diagnosed N=98 N (%)/Median (Range) Relapsed N=28 N (%)/Median (Range) P-value Age (years) 28 (2-60) 31 (8-54) 0.997 Sex: Male 48 (49) 25 (89.3) 0.000 WBC x 109/Lt 14.5 (0.5-290) 3.5 (0.5-24.90) 0.000 Platelet x 109/Lt 17 (3-85) 31.5 (6-248) 0.006 RT-PCR: bcr1 59 (60.2) 21 (75) bcr2 2 (2) 0 0.311 bcr3 37 (37.8) 7 (25) Lactate dehydrogenase (IU/Lt)) 748 (291-2700) 554 (284-1155) 0.006 Fibrinogen mg% 161 (25-689) 163 (70-1122) 0.975 Additional Cytogenetic finding 34 (36.6) 11 (61.1) 0.068 IC Bleed in induction: Yes 16 (16.3) 0 (0%) 0.022 Platelet rich concentrates in induction (units) 24 (0-85) 16 (0-48) 0.027 Disclosures: No relevant conflicts of interest to declare.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2012
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  • 8
    In: Nature Genetics, Springer Science and Business Media LLC, Vol. 54, No. 4 ( 2022-04), p. 412-436
    Abstract: Characterization of the genetic landscape of Alzheimer’s disease (AD) and related dementias (ADD) provides a unique opportunity for a better understanding of the associated pathophysiological processes. We performed a two-stage genome-wide association study totaling 111,326 clinically diagnosed/‘proxy’ AD cases and 677,663 controls. We found 75 risk loci, of which 42 were new at the time of analysis. Pathway enrichment analyses confirmed the involvement of amyloid/tau pathways and highlighted microglia implication. Gene prioritization in the new loci identified 31 genes that were suggestive of new genetically associated processes, including the tumor necrosis factor alpha pathway through the linear ubiquitin chain assembly complex. We also built a new genetic risk score associated with the risk of future AD/dementia or progression from mild cognitive impairment to AD/dementia. The improvement in prediction led to a 1.6- to 1.9-fold increase in AD risk from the lowest to the highest decile, in addition to effects of age and the APOE ε4 allele.
    Type of Medium: Online Resource
    ISSN: 1061-4036 , 1546-1718
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    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2022
    detail.hit.zdb_id: 1494946-5
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