GLORIA

GEOMAR Library Ocean Research Information Access

Your email was sent successfully. Check your inbox.

An error occurred while sending the email. Please try again.

Proceed reservation?

Export
  • 1
    In: Nature, Springer Science and Business Media LLC, Vol. 513, No. 7517 ( 2014-09-11), p. 195-201
    Type of Medium: Online Resource
    ISSN: 0028-0836 , 1476-4687
    RVK:
    RVK:
    RVK:
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2014
    detail.hit.zdb_id: 120714-3
    detail.hit.zdb_id: 1413423-8
    SSG: 11
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 2
    Online Resource
    Online Resource
    Proceedings of the National Academy of Sciences ; 2013
    In:  Proceedings of the National Academy of Sciences Vol. 110, No. 25 ( 2013-06-18)
    In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 110, No. 25 ( 2013-06-18)
    Abstract: The transposon piggyBac is being used increasingly for genetic studies. Here, we describe modified versions of piggyBac transposase that have potentially wide-ranging applications, such as reversible transgenesis and modified targeting of insertions. piggyBac is distinguished by its ability to excise precisely, restoring the donor site to its pretransposon state. This characteristic makes piggyBac useful for reversible transgenesis, a potentially valuable feature when generating induced pluripotent stem cells without permanent alterations to genomic sequence. To avoid further genome modification following piggyBac excision by reintegration, we generated an excision competent/integration defective (Exc + Int − ) transposase. Our findings also suggest the position of a target DNA–transposase interaction. Another goal of genome engineering is to develop reagents that can guide transgenes to preferred genomic regions. Others have shown that piggyBac transposase can be active when fused to a heterologous DNA-binding domain. An Exc + Int − transposase, the intrinsic targeting of which is defective, might also be a useful intermediate in generating a transposase whose integration activity could be rescued and redirected by fusion to a site-specific DNA-binding domain. We show that fusion to two designed zinc finger proteins rescued the Int − phenotype. Successful guided transgene integration into genomic DNA would have broad applications to gene therapy and molecular genetics. Thus, an Exc + Int − transposase is a potentially useful reagent for genome engineering and provides insight into the mechanism of transposase–target DNA interaction.
    Type of Medium: Online Resource
    ISSN: 0027-8424 , 1091-6490
    RVK:
    RVK:
    Language: English
    Publisher: Proceedings of the National Academy of Sciences
    Publication Date: 2013
    detail.hit.zdb_id: 209104-5
    detail.hit.zdb_id: 1461794-8
    SSG: 11
    SSG: 12
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 3
    In: Gene, Elsevier BV, Vol. 238, No. 1 ( 1999-9), p. 163-170
    Type of Medium: Online Resource
    ISSN: 0378-1119
    RVK:
    Language: English
    Publisher: Elsevier BV
    Publication Date: 1999
    detail.hit.zdb_id: 1491012-3
    SSG: 12
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 4
    Online Resource
    Online Resource
    Proceedings of the National Academy of Sciences ; 2013
    In:  Proceedings of the National Academy of Sciences Vol. 110, No. 29 ( 2013-07-16)
    In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 110, No. 29 ( 2013-07-16)
    Abstract: A codon-optimized mouse LINE-1 element, ORFeus , exhibits dramatically higher retrotransposition frequencies compared with its native long interspersed element 1 counterpart. To establish a retrotransposon-mediated mouse model with regulatable and potent mutagenic capabilities, we generated a tetracycline (tet)-regulated ORFeus element harboring a gene-trap cassette. Here, we show that mice expressing tet- ORFeus broadly exhibit robust retrotransposition in somatic tissues when treated with doxycycline. Consistent with a significant mutagenic burden, we observed a reduced number of double transgenic animals when treated with high-level doxycycline during embryogenesis. Transgene induction in skin resulted in a white spotting phenotype due to somatic ORFeus -mediated mutations that likely disrupt melanocyte development. The data suggest a high level of transposition in melanocyte precursors and consequent mutation of genes important for melanoblast proliferation, differentiation, or migration. These findings reveal the utility of a retrotransposon-based mutagenesis system as an alternative to existing DNA transposon systems. Moreover, breeding these mice to different tet-transactivator/reversible tet-transactivator lines supports broad functionality of tet- ORFeus because of the potential for dose-dependent, tissue-specific, and temporal-specific mutagenesis.
    Type of Medium: Online Resource
    ISSN: 0027-8424 , 1091-6490
    RVK:
    RVK:
    Language: English
    Publisher: Proceedings of the National Academy of Sciences
    Publication Date: 2013
    detail.hit.zdb_id: 209104-5
    detail.hit.zdb_id: 1461794-8
    SSG: 11
    SSG: 12
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 5
    Online Resource
    Online Resource
    Proceedings of the National Academy of Sciences ; 2010
    In:  Proceedings of the National Academy of Sciences Vol. 107, No. 51 ( 2010-12-21), p. 21966-21972
    In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 107, No. 51 ( 2010-12-21), p. 21966-21972
    Abstract: Transposons are mobile genetic elements that are an important source of genetic variation and are useful tools for genome engineering, mutagenesis screens, and vectors for transgenesis including gene therapy. We have used second-generation sequencing to analyze ≈2 × 10 5 unique de novo transposon insertion sites of the transposon Hermes in the Saccharomyces cerevisiae genome from both in vitro transposition reactions by using purified yeast genomic DNA, to better characterize intrinsic sequence specificity, and sites recovered from in vivo transposition events, to characterize the effect of intracellular factors such as chromatin on target site selection. We find that Hermes transposon targeting in vivo is profoundly affected by chromatin structure: The subset of genome-wide target sites used in vivo is strongly associated ( P 〈 2 e -16 by Fisher's exact test) with nucleosome-free chromatin. Our characterization of the insertion site preferences of Hermes not only assists in the future use of this transposon as a molecular biology tool but also establishes methods to more fully determine targeting mechanisms of other transposons. We have also discovered a long-range sequence motif that defines S. cerevisiae nucleosome-free regions.
    Type of Medium: Online Resource
    ISSN: 0027-8424 , 1091-6490
    RVK:
    RVK:
    Language: English
    Publisher: Proceedings of the National Academy of Sciences
    Publication Date: 2010
    detail.hit.zdb_id: 209104-5
    detail.hit.zdb_id: 1461794-8
    SSG: 11
    SSG: 12
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 6
    In: Cell, Elsevier BV, Vol. 141, No. 7 ( 2010-06), p. 1171-1182
    Type of Medium: Online Resource
    ISSN: 0092-8674
    RVK:
    RVK:
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2010
    detail.hit.zdb_id: 187009-9
    detail.hit.zdb_id: 2001951-8
    SSG: 12
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 7
    Online Resource
    Online Resource
    Proceedings of the National Academy of Sciences ; 2006
    In:  Proceedings of the National Academy of Sciences Vol. 103, No. 47 ( 2006-11-21), p. 17632-17637
    In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 103, No. 47 ( 2006-11-21), p. 17632-17637
    Abstract: Mobile elements are important components of our genomes, with diverse and significant effects on phenotype. Not only can transposons inactivate genes by direct disruption and shuffle the genome through recombination, they can also alter gene expression subtly or powerfully. Currently active transposons are highly polymorphic in host populations, including, among hundreds of others, L1 and Alu elements in humans and Ty1 elements in yeast. For this reason, we wished to develop a simple genome-wide method for identifying all transposons in any given sample. We have designed a transposon insertion site profiling chip (TIP-chip), a microarray intended for use as a high-throughput technique for mapping transposon insertions. By selectively amplifying transposon flanking regions and hybridizing them to the array, we can locate all transposons present in a sample. We have tested the TIP-chip extensively to map Ty1 retrotransposon insertions in yeast and have achieved excellent results in two laboratory strains as well as in evolved Ty1 high-copy strains. We are able to identify all of the theoretically detectable transposons in the FY2 lab strain, with essentially no false positives. In addition, we mapped many new transposon copies in the high-copy Ty1 strain and determined its Ty1 insertion pattern.
    Type of Medium: Online Resource
    ISSN: 0027-8424 , 1091-6490
    RVK:
    RVK:
    Language: English
    Publisher: Proceedings of the National Academy of Sciences
    Publication Date: 2006
    detail.hit.zdb_id: 209104-5
    detail.hit.zdb_id: 1461794-8
    SSG: 11
    SSG: 12
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 8
    Online Resource
    Online Resource
    Rockefeller University Press ; 2015
    In:  Journal of Cell Biology Vol. 208, No. 1 ( 2015-01-05), p. 33-52
    In: Journal of Cell Biology, Rockefeller University Press, Vol. 208, No. 1 ( 2015-01-05), p. 33-52
    Abstract: Nuclear organization has been implicated in regulating gene activity. Recently, large developmentally regulated regions of the genome dynamically associated with the nuclear lamina have been identified. However, little is known about how these lamina-associated domains (LADs) are directed to the nuclear lamina. We use our tagged chromosomal insertion site system to identify small sequences from borders of fibroblast-specific variable LADs that are sufficient to target these ectopic sites to the nuclear periphery. We identify YY1 (Ying-Yang1) binding sites as enriched in relocating sequences. Knockdown of YY1 or lamin A/C, but not lamin A, led to a loss of lamina association. In addition, targeted recruitment of YY1 proteins facilitated ectopic LAD formation dependent on histone H3 lysine 27 trimethylation and histone H3 lysine di- and trimethylation. Our results also reveal that endogenous loci appear to be dependent on lamin A/C, YY1, H3K27me3, and H3K9me2/3 for maintenance of lamina-proximal positioning.
    Type of Medium: Online Resource
    ISSN: 1540-8140 , 0021-9525
    RVK:
    Language: English
    Publisher: Rockefeller University Press
    Publication Date: 2015
    detail.hit.zdb_id: 1421310-2
    SSG: 12
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 9
    Online Resource
    Online Resource
    Proceedings of the National Academy of Sciences ; 2006
    In:  Proceedings of the National Academy of Sciences Vol. 103, No. 49 ( 2006-12-05), p. 18662-18667
    In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 103, No. 49 ( 2006-12-05), p. 18662-18667
    Abstract: Long interspersed element type 1 (L1) retrotransposons are ubiquitous mammalian mobile elements and potential tools for in vivo mutagenesis; however, native L1 elements are relatively inactive in mice when introduced as transgenes. We have previously described a synthetic L1 element, ORFeus , containing two synonymously recoded ORFs relative to mouse L1. It is significantly more active for retrotransposition in cell culture than all native L1 elements tested. To study its activity in vivo , we developed a transgenic mouse model in which ORFeus expression was controlled by a constitutive heterologous promoter, and we established definitive evidence for ORFeus retrotransposition activity both in germ line and somatic tissues. Germ line retrotransposition frequencies resulting in 0.33 insertions per animal are seen among progeny of ORFeus donor element heterozygotes derived from a single founder, representing a 〉 20-fold increase over native L1 elements. We observe somatic transposition events in 100% of the ORFeus donor-containing animals, and an average of 17 different insertions are easily recovered from each animal; modeling suggests that the number of somatic insertions per animal exceeds this number by perhaps several orders of magnitude. Nearly 200 insertions were precisely mapped, and their distribution in the mouse genome appears random relative to transcription units and guanine-cytosine content. The results suggest that ORFeus may be developed into useful tools for in vivo mutagenesis.
    Type of Medium: Online Resource
    ISSN: 0027-8424 , 1091-6490
    RVK:
    RVK:
    Language: English
    Publisher: Proceedings of the National Academy of Sciences
    Publication Date: 2006
    detail.hit.zdb_id: 209104-5
    detail.hit.zdb_id: 1461794-8
    SSG: 11
    SSG: 12
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 10
    In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 109, No. 21 ( 2012-05-22)
    Abstract: The role of Ncoa2 in regulating glucose metabolism may play a role in its antitumorigenic activity. Mice lacking Ncoa2 develop glycogen storage disease type 1 (Von Gierke’s disease) and exhibit decreased activity of G6pase. Similarly, a genetic deficiency of G6PC leads to Von Gierke’s disease in humans and in mice. Patients who have Von Gierke’s disease and G6Pase −/− mice develop liver adenomas and are at high risk of progression to HCC. Moreover, inhibition of hexokinase, which has the same functional effect as increasing G6Pase activity, is antitumorigenic. Based on these findings, loss of Ncoa2 may promote liver tumorigenesis at least in part through a subsequent reduction in G6Pase activity, which would be expected to increase glycolytic flux by increasing levels of glucose-6-phosphate. Thus, reduction of Ncoa2 and G6Pase may contribute to the metabolic reprogramming of cancer cells and fuel tumor growth. However, Ncoa2 loss of function also leads to broader dysregulation of gene expression in liver ( 5 ), including the altered expression of genes involved in signal transduction and cell death. Therefore, Ncoa2 likely functions as a tumor suppressor by controlling the activity of multiple pathways and targets relevant to hepatocarcinogenesis. Future studies will focus on the detailed mechanistic dissection of NCOA2-mediated tumor suppression. Among the genes identified in our screen, Ncoa2 was of particular interest. Ncoa2 is a member of the p160 family of transcriptional coactivators that activates expression of Glucose 6 phosphatase ( G6Pase ) and other important genes by acting in concert with nuclear receptors such as RORα. G6Pase is a rate-limiting enzyme that dephosphorylates glucose-6-phosphate, the initial substrate for glycolysis. Analysis of gene-expression data from human HCC revealed that low expression of NCOA2 and its target G6PC are associated with poor patient survival. Furthermore, we documented that genetic ablation of Ncoa2/Src-2 in mice promotes liver tumorigenesis in a carcinogen-induced hepatocarcinogenesis model. These findings establish a tumor-suppressor role for Ncoa2 in HCC and demonstrate that transposon-mediated mutagenesis screens in mice can identify clinically relevant genes that participate in the pathogenesis of human cancer. We next validated that the genes identified in the SB screen contribute to tumor initiation and/or progression using in vitro and in vivo cancer model systems. First, we used liver progenitor cells that form tumors only after sustaining additional genetic alterations. Candidate gene function was inhibited using shRNAs, and cells were transplanted into recipient mice to assess tumor-forming potential. These experiments validated the tumor-suppressor activity of several genes, including Nuclear receptor coactivator 2 ( Ncoa2/Src-2 ), Zinc finger transcription factor ( Zfx ) , and Beta-Dystrobrevin ( Dtnb ). Next, we compared our SB hit list with an expression-profiling dataset from a large cohort of human liver tumors to determine the relevance of the CISs to human liver cancer pathogenesis. We found that several of the genes identified in our screen exhibit dysregulated expression in human hepatocellular carcinoma (HCC). In this study, we sought to identify genes that, when mutated, contribute to accelerated liver tumor development ( Fig. P1 ). Specifically, a screening approach was designed to recover mutations that cooperate with MYC , one of the most commonly dysregulated genes in human malignancy. We bred mice containing an active SB transposon to mice that develop MYC-induced liver cancer. A cohort of mice containing the SB transposon, a transposase, and the MYC oncogene expressed specifically in liver cells was generated. Control mice expressed MYC but lacked an active SB transposon. A significantly higher percentage of animals harboring the active SB element developed liver tumors compared with controls. We used high-throughput sequencing to characterize transposon insertion sites in tumors and to identify regions of the genome that harbored insertions at a statistically significantly greater frequency than expected by chance. These common insertion sites (CISs) mark genes that are likely to accelerate tumorigenesis when their functions are altered. This approach identified at least 16 genes/loci that contribute to liver tumor development. Emerging data from cancer genome-sequencing studies have demonstrated that human tumors exhibit tremendous complexity and heterogeneity in the number and nature of identified mutations ( 1 ). Based on these findings, there is an increasing need for in vivo validation of genes whose altered function contributes to cancer pathogenesis. Transposons are DNA sequences that can insert themselves into new locations within the genome and thereby serve as powerful mutagens. Sleeping Beauty ( SB ), a member of the Tc1/mariner superfamily of DNA transposons, is highly active in mammalian cells ( 2 ). A growing body of evidence has revealed that the SB system is an efficient tool for cancer gene discovery ( 3 , 4 ). We have performed a forward genetic screen using the SB system to identify genes that accelerate liver tumorigenesis in mice. Our findings reveal genes and pathways that participate in tumorigenesis and therefore may provide targets for liver cancer therapy.
    Type of Medium: Online Resource
    ISSN: 0027-8424 , 1091-6490
    RVK:
    RVK:
    Language: English
    Publisher: Proceedings of the National Academy of Sciences
    Publication Date: 2012
    detail.hit.zdb_id: 209104-5
    detail.hit.zdb_id: 1461794-8
    SSG: 11
    SSG: 12
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
Close ⊗
This website uses cookies and the analysis tool Matomo. More information can be found here...