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  • 1
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology ecology 42 (2002), S. 0 
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: The physiological response of bacteria to temperature is critical for the regulation of biogeochemical processes on daily, seasonal, and inter-annual time scales. We investigated the temperature response of the marine sulfate-reducing bacterium Desulfobacterium autotrophicum strain HRM2. Growth experiments in a temperature gradient block demonstrated that D. autotrophicum is psychrotolerant and grows between 0 and 31°C. The normal range of temperature for growth is between 4 and 29°C. The physiological response to temperature changes was studied with three sets of cells that were acclimated at 4, 10, and 28°C, respectively. Sulfate reduction rates were determined in the temperature gradient block with short-term incubations to minimize growth. The rates were similar at the 4 and 10°C acclimation temperature, and exhibited an enhanced response at 28°C. At every acclimation temperature, sulfate reduction rates increased 20-fold from −1.7 to 41°C. The relative proportion of cellular unsaturated fatty acids (e.g. cis16:1) and short-chain fatty acids increased when cells were grown at 4°C compared to 28°C. The proteome of D. autotrophicum strain HRM2 was studied by two-dimensional gel electrophoresis with soluble extracts of cells grown at the three respective acclimation temperatures. Protein patterns were similar with the exception of two proteins showing 5–10-fold lower abundance in the 4°C culture compared to the 28°C culture. In general, D. autotrophicum strain HRM2 responded to low temperatures by reduced metabolic activity rather than by pronounced de novo synthesis of specifically adapted enzymes. Such a strategy agrees well with in situ activities measured in field studies and may reflect a common physiological principle of psychrotolerant marine sulfate-reducing bacteria.
    Type of Medium: Electronic Resource
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  • 2
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] For years, microbiologists characterized the Archaea as obligate extremophiles that thrive in environments too harsh for other organisms. The limited physiological diversity among cultivated Archaea suggested that these organisms were metabolically constrained to a few environmental niches. For ...
    Type of Medium: Electronic Resource
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  • 3
    Publication Date: 2016-10-25
    Description: Membrane lipids of marine planktonic archaea have provided unique insights into archaeal ecology and paleoceanography. However, past studies of archaeal lipids in suspended particulate matter (SPM) and sediments mainly focused on a small class of fully saturated glycerol dibiphytanyl glycerol tetraether (GDGT) homologues identified decades ago. The apparent low structural diversity of GDGTs is in strong contrast to the high diversity of metabolism and taxonomy among planktonic archaea. Furthermore, adaptation of archaeal lipids in the deep ocean remains poorly constrained. We report the archaeal lipidome in SPM from diverse oceanic regimes. We extend the known inventory of planktonic archaeal lipids to include numerous unsaturated archaeal ether lipids (uns-AELs). We further reveal (i) different thermal regulations and polar headgroup compositions of membrane lipids between the epipelagic (≤ 100 m) and deep (〉100 m) populations of archaea, (ii) stratification of unsaturated GDGTs with varying redox conditions, and (iii) enrichment of tetratetraunsaturated archaeol and fully saturated GDGTs in epipelagic and deep oxygenated waters, respectively. Such str atified lipid patterns are consistent with the typical distribution of archaeal phylotypes in marine environments. We, thus, provide an ecological context for GDGT-based paleoclimatology and bring about the potential use of uns-AELs as biomarkers for planktonic Euryarchaeota.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 4
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    WILEY-BLACKWELL PUBLISHING
    In:  EPIC3Environmental Microbiology Reports, WILEY-BLACKWELL PUBLISHING, 12(5), pp. 555-567, ISSN: 1758-2229
    Publication Date: 2020-12-16
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 5
    Publication Date: 2022-05-25
    Description: Author Posting. © The Author(s), 2018. This is the author's version of the work. It is posted here under a nonexclusive, irrevocable, paid-up, worldwide license granted to WHOI. It is made available for personal use, not for redistribution. The definitive version was published in Geochimica et Cosmochimica Acta 237 (2018): 339-356, doi:10.1016/j.gca.2018.06.029.
    Description: The abundance of methane isotopologues with two rare isotopes (e.g., 13CH3D) has been proposed as a tool to estimate the temperature at which methane is formed or thermally equilibrated. It has been shown, however, that microbial methane from surface environments and from laboratory cultures is characterized by low 13CH3D abundance, corresponding to anomalously high apparent 13CH3D equilibrium temperatures. We carried out a series of batch culture experiments to investigate the origin of the non-equilibrium signals in microbial methane by exploring a range of metabolic pathways, growth temperatures, and hydrogen isotope compositions of the media. We found that thermophilic methanogens (Methanocaldococcus jannaschii, Methanothermococcus thermolithotrophicus, and Methanocaldococcus bathoardescens) grown on H2+CO2 at temperatures between 60 and 80°C produced methane with Δ13CH3D values (defined as the deviation from stochastic abundance) of 0.5 to 2.5‰, corresponding to apparent 13CH3D equilibrium temperatures of 200 to 600°C. Mesophilic methanogens (Methanosarcina barkeri and Methanosarcina mazei) grown on H2+CO2, acetate, or methanol produced methane with consistently low Δ13CH3D values, down to -5.2‰. Closed system effects can explain part of the non-equilibrium signals for methane from thermophilic methanogens. Experiments with M. barkeri using D-spiked water or D-labeled acetate (CD3COO-) indicate that 1.6 to 1.9 out of four H atoms in methane originate from water, but Δ13CH3D values of product methane only weakly correlate with the D/H ratio of medium water. Our experimental results demonstrate that low Δ13CH3D values are not specific to the metabolic pathways of methanogenesis, suggesting that they could be produced during enzymatic reactions common in the three methanogenic pathways, such as the reduction of methyl-coenzyme M. Nonetheless C-H bonds inherited from precursor methyl groups may also carry part of non-equilibrium signals.
    Description: Grants from the National Science Foundation (EAR-1250394 to S.O.), N. Braunsdorf and D. Smit of Shell PTI/EG (to S.O.), the Deep Carbon Observatory (to S.O., M.K., K.-U.H., D.S.G.), the Gottfried Wilhelm Leibniz Program of the Deutsche Forschungsgemeinschaft (HI 616-14-1 to K.- U.H.), and the Heisenberg Program (KO3651-3-1 to M.K.) of the Deutsche Forschungsgemeinschaft supported this study. D.S.G. was also supported by a National Science Foundation Graduate Research Fellowship, the Neil and Anna Rasmussen Foundation Fund, the Grayce B. Kerr Fellowship, and a Shell-MIT Energy Initiative Graduate Fellowship. D.T.W. was supported by a National Defense Science and Engineering Graduate Fellowship. L.C.S. was supported by a NASA Earth and Space Science Fellowship (grant NNX11AP78H).
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
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  • 6
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    Wiley Online Library
    In:  EPIC3Environmental Microbiology Reports, Wiley Online Library, 12(5), pp. 555-567
    Publication Date: 2021-10-20
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , peerRev
    Format: application/pdf
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