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  • 1
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 7 (2016): 1731, doi: 10.3389/fmicb.2016.01731.
    Description: The marine ecosystem along the Western Antarctic Peninsula undergoes a dramatic seasonal transition every spring, from almost total darkness to almost continuous sunlight, resulting in a cascade of environmental changes, including phytoplankton blooms that support a highly productive food web. Despite having important implications for the movement of energy and materials through this ecosystem, little is known about how these changes impact bacterial succession in this region. Using 16S rRNA gene amplicon sequencing, we measured changes in free-living bacterial community composition and richness during a 9-month period that spanned winter to the end of summer. Chlorophyll a concentrations were relatively low until summer when a major phytoplankton bloom occurred, followed 3 weeks later by a high peak in bacterial production. Richness in bacterial communities varied between ~1,200 and 1,800 observed operational taxonomic units (OTUs) before the major phytoplankton bloom (out of ~43,000 sequences per sample). During peak bacterial production, OTU richness decreased to ~700 OTUs. The significant decrease in OTU richness only lasted a few weeks, after which time OTU richness increased again as bacterial production declined toward pre-bloom levels. OTU richness was negatively correlated with bacterial production and chlorophyll a concentrations. Unlike the temporal pattern in OTU richness, community composition changed from winter to spring, prior to onset of the summer phytoplankton bloom. Community composition continued to change during the phytoplankton bloom, with increased relative abundance of several taxa associated with phytoplankton blooms, particularly Polaribacter. Bacterial community composition began to revert toward pre-bloom conditions as bacterial production declined. Overall, our findings clearly demonstrate the temporal relationship between phytoplankton blooms and seasonal succession in bacterial growth and community composition. Our study highlights the importance of high-resolution time series sampling, especially during the relatively under-sampled Antarctic winter and spring, which enabled us to discover seasonal changes in bacterial community composition that preceded the summertime phytoplankton bloom.
    Description: CL was partially funded by the Graduate School and the Department of Ecology and Evolutionary Biology at Brown University and the Brown University-Marine Biological Laboratory Joint Graduate Program. This material is based upon work supported by the National Science Foundation under Grant Nos. ANT-1142114 to LA-Z, OPP-0823101 and PLR-1440435 to HD, and ANT-1141993 to JR.
    Keywords: 16S rRNA gene ; Ecological succession ; Antarctica ; Bacterial production ; Bacterial community composition ; Polaribacter ; Pelagibacter ubique (SAR11) ; Rhodobacteraceae
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 2
    Publication Date: 2022-05-25
    Description: Author Posting. © Inter-Research, 2011. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Aquatic Microbial Ecology 64: 205-220, doi:10.3354/ame01519.
    Description: Along the western Antarctic Peninsula, marine bacterioplankton respond to the spring phytoplankton bloom with increases in abundance, production and growth rates, and a seasonal succession in bacterial community composition (BCC). We investigated the response of the bacterial community to experimental additions of glucose and ammonium, alone or in combination, incubated in replicate carboys (each: 50 l) over 10 d in November 2006. Changes in bulk properties (abundance, production rates) in the incubations resembled observations in the nearshore environment over 8 seasons (2001 to 2002 through 2008 to 2009) at Palmer Stn (64.8°S, 64.1°W). Changes in bulk properties and BCC in ammonium-amended carboys were small relative to controls, compared to the glucose-amended treatments. The BCC in Day 0 and Day 10 controls and ammonium treatments were 〉72% similar when assessed by denaturing-gradient gel electrophoresis (DGGE), length heterogeneity polymerase chain reaction (LH-PCR) and capillary electrophoresis single-strand conformation polymorphism (CE-SSCP) fingerprinting techniques. Bacterial abundance increased 2- to 10-fold and leucine incorporation rates increased 2- to 30-fold in the glucose treatments over 6 d. The BCC in carboys receiving glucose (with or without ammonium) remained 〉60% similar to that in Day 0 controls at 6 d and evolved to 〈20% similar to that in Day 0 controls after 10 d incubation. The increases in bacterial production rates, and the changes in BCC, suggest that selection for glucose-utilizing bacteria was slow under the ambient environmental conditions. The results suggest that organic carbon enrichment is a major factor influencing the observed winter-to-summer increase in bacterial abundance and activity. In contrast, the BCC was relatively robust, changing little until after repeated additions of glucose and prolonged (~10 d) incubation.
    Description: H.W.D. and A.E.M. were supported by US NSF grants ANT-0632278 and ANT- 0632389, respectively. This research was partly supported by NSF OPP-0217282 (Palmer LTER). J.F.G. was supported by the Institut Français pour la Recherche et la Technologie Polaires (IFRTP).
    Keywords: Antarctica ; Bacterial community composition ; Bioassay ; Marine bacterioplankton
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 3
    Publication Date: 2022-05-25
    Description: Author Posting. © The Author(s), 2012. This is the author's version of the work. It is posted here by permission of Annual Reviews for personal use, not for redistribution. The definitive version was published in Annual Review of Marine Science 5 (2013):525-533, doi:10.1146/annurev-marine-121211-172331.
    Description: For more than a decade there has been controversy in oceanography regarding the metabolic state of the oligotrophic gyres of the open sea. Here we review background on this controversy, commenting on several issues to set the context for a moderated debate between two groups of scientists. In a companion paper, Williams et al (2013) take the view that the oligotrophic subtropical gyres of the global ocean exhibit a state of net autotrophy, that is, the gross primary production (GPP) exceeds community respiration (R), when averaged over some suitably extensive region and over a long duration. Duarte et al (2013) take the opposite view, that the oligotrophic subtropical gyres are net heterotrophic, with R exceeding the GPP. This idea -- that large, remote areas of the upper ocean could be net heterotrophic raises of host of fundamental scientific questions about the metabolic processes of photosynthesis and respiration that underlie ocean ecology and global biogeochemistry. The question remains unresolved, in part, because the net state is finely balanced between large opposing fluxes and most current measurements have large uncertainties. This challenging question must be studied against the background of large, anthropogenically-driven changes in ocean ecology and biogeochemistry Current trends of anthropogenic change make it an urgent problem to solve and also greatly complicate finding that solution.
    Description: The authors acknowledge support from the U.S. National Science Foundation through the Center for Microbial Oceanography Research and Education (C-MORE), an NSF Science and Technology Center (EF-0424599), and NSF award OPP 0823101 (Palmer LTER) from the Antarctic Organisms and Ecosystems Program.
    Keywords: Net heterotrophy ; Net autotrophy ; Net community production ; Oligotrophic gyres ; Oxygen
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
    Format: application/pdf
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  • 4
    Publication Date: 2022-05-26
    Description: Author Posting. © American Geophysical Union, 2014. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 41 (2014): 6803–6810, doi:10.1002/2014GL061266.
    Description: We use autonomous gas measurements to examine the metabolic balance (photosynthesis minus respiration) of coastal Antarctic waters during the spring/summer growth season. Our observations capture the development of a massive phytoplankton bloom and reveal striking variability in pCO2 and biological oxygen saturation (ΔO2/Ar) resulting from large shifts in community metabolism on time scales ranging from hours to weeks. Diel oscillations in surface gases are used to derive a high-resolution time series of net community production (NCP) that is consistent with 14C-based primary productivity estimates and with the observed seasonal evolution of phytoplankton biomass. A combination of physical mixing, grazing, and light availability appears to drive variability in coastal Antarctic NCP, leading to strong shifts between net autotrophy and heterotrophy on various time scales. Our approach provides insight into the metabolic responses of polar ocean ecosystems to environmental forcing and could be employed to autonomously detect climate-dependent changes in marine primary productivity.
    Description: This study was supported by funds from the U.S. National Science Foundation (OPP awards ANT-0823101, ANT-1043559, ANT-1043593, and ANT-1043532) as well as support for PDT and ECA from the National Science and Engineering Research Council of Canada.
    Description: 2015-04-03
    Keywords: Photosynthesis ; Respiration ; Net community production ; DO2/Ar ; CO2 ; Antarctica
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 5
    Publication Date: 2022-05-26
    Description: Author Posting. © American Geophysical Union, 2012. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Global Biogeochemical Cycles 26 (2012): GB2005, doi:10.1029/2010GB004028.
    Description: In connection with the Palmer LTER program, mixed layer water samples were collected during the cruise of the L.M. Gould in Jan., 2008 at 49 stations on a 20 × 100 km grid in the West Antarctica Peninsula (WAP) region of the Southern Ocean. In this study, [O2]/[Ar] ratios and the triple isotope composition of dissolved O2 were measured, and were used to estimate net community O2 production (NCP) and gross primary O2 production (GPP), respectively. These estimates are further converted to carbon export production, primary production and the f-ratio. Our measurements give NCP ranging from −3 to 76 mmol O2 m−2 day−1 (−25 to 650 mg C m−2 day−1), and GPP from 40 to 220 mmol O2 m−2 day−1 (180 to 1010 mg C m−2 day−1). The O2 NCP/GPP ratios range from −0.04 to 0.43, corresponding to f-ratios of −0.08 to 0.83. NCP and the NCP/GPP ratio are highest in the northern coastal areas, and decrease to lower values toward the southern coastal area and the open ocean. The inshore-offshore gradient appears to be regulated primarily by iron availability, as supported by the positive correlation between NCP and Fv/Fm ratios (r2 = 0.22, p 〈 0.05). Mixed layer depth (MLD) is inversely correlated with NCP (r2 = 0.21, p 〈 0.002) and NCP/GPP (r2 = 0.21, p 〈 0.02), and highest NCP occurred in the fresh water lenses probably formed from melted coastal glaciers. These results suggest that export production and the f-ratio increase where water stratification is intensified by input of fresh meltwater, and that mixed layer stratification is the major factor regulating NCP in the inner-shelf and coastal regions. Along-shelf variability of phytoplankton community composition is highly correlated with NCP, i.e., NCP increases when the diatom-dominated community in the south transitions to the cryptophyte-dominated one in the north. A high correlation is also observed between NCP and the logarithm of the surface chlorophyll concentration (r2 = 0.72, p 〈 0.0001) , which makes it possible to estimate carbon export as a function of Chl a concentration in this region.
    Description: This research was supported by NSF-OPP grant 0823101 to Ducklow and NASA Earth and Space Sciences Fellowship to Huang.
    Description: 2012-10-24
    Keywords: Southern Ocean ; Chlorophyll ; Gross primary production ; Net community production ; Oxygen isotopes ; Phytoplankton
    Repository Name: Woods Hole Open Access Server
    Type: Article
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