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  • Estuary  (8)
  • Alexandrium fundyense  (2)
  • 1
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    Dynamics of Alexandrium fundyense blooms and shellfish toxicity in the Nauset Marsh System of Cape Cod (Massachusetts, USA) (2012)
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © The Author(s), 2011. This is the author's version of the work. It is posted here by permission of Elsevier B.V. for personal use, not for redistribution. The definitive version was published in Harmful Algae 12 (2011): 26–38, doi:10.1016/j.hal.2011.08.009.
    Description: Paralytic Shellfish Poisoning (PSP) toxins are annually recurrent along the Massachusetts coastline (USA), which includes many small embayments and salt ponds. Among these is the Nauset Marsh System (NMS), which has a long history of PSP toxicity. Little is known, however, about the bloom dynamics of the causative organism Alexandrium fundyense within that economically and socially important system. The overall goal of this work was to characterize the distribution and dynamics of A. fundyense blooms within the NMS and adjacent coastal waters by documenting the distribution and abundance of resting cysts and vegetative cells. Cysts were found predominantly in three drowned kettle holes or salt ponds at the distal ends of the NMS - Salt Pond, Mill Pond, and Town Cove. The central region of the NMS had a much lower concentration of cysts. Two types of A. fundyense blooms were observed. One originated entirely within the estuary, seeded by cysts in the three seedbeds. These blooms developed independently of each other and of the A. fundyense population observed in adjacent coastal waters outside the NMS. The temporal development of the blooms was different in the three salt ponds, with initiation differing by as much as 30 days. These differences do not appear to reflect the initial cyst abundances in these locations, and may simply result from higher cell retention and higher nutrient concentrations in Mill Pond, the first site to bloom. Germination of cysts accounted for a small percentage of the peak cell densities in the ponds, so population size was influenced more by the factors affecting growth than by cyst abundance. Subsurface cell aggregation (surface avoidance) limited advection of the vegetative A. fundyense cells out of the salt ponds through the shallow inlet channels. Thus, the upper reaches of the NMS are at the greatest risk for PSP since the highest cyst abundances and cell concentrations were found there. After these localized blooms in the salt ponds peaked and declined, a second, late season bloom occurred within the central portions of the NMS. The timing of this second bloom relative to those within the salt ponds and the coastal circulation patterns at that time strongly suggest that those cells originated from a regional A. fundyense bloom in the Gulf of Maine, delivered to the central marsh from coastal waters outside the NMS through Nauset Inlet. These results will guide policy decisions about water quality as well as shellfish monitoring and utilization within the NMS and highlight the potential for “surgical” closures of shellfish during PSP events, leaving some areas open for harvesting while others are closed.
    Description: This work was supported by NOAA Grant NA06OAR4170021, NPS Grant H238015504 and by the Woods Hole Center for Oceans and Human Health through NSF Grants OCE-0911031 and OCE-0430724 and NIEHS Grant 1P50-ES01274201. B.G.C. was supported by a Xunta de Galicia Ángeles Alvariño fellowship and the Stanley W. Watson Chair for Excellence in Oceanography under a Postdoctoral program at the Woods Hole Oceanographic Institution.
    Keywords: Paralytic shellfish poisoning ; Alexandrium fundyense ; Dinoflagellate cysts ; Bloom dynamics ; Retention mechanism ; Nauset Marsh System
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
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  • 2
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    Hydraulics and mixing in a laterally divergent channel of a highly stratified estuary (2017)
    John Wiley & Sons
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2017. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 122 (2017): 4743–4760, doi:10.1002/2016JC012455.
    Description: Estuarine mixing is often intensified in regions where topographic forcing leads to hydraulic transitions. Observations in the salt-wedge estuary of the Connecticut River indicate that intense mixing occurs during the ebb tide in regions of supercritical flow that is accelerated by lateral expansion of the channel. The zones of mixing are readily identifiable based on echo-sounding images of large-amplitude shear instabilities. The gradient Richardson number (Ri) averaged across the mixing layer decreases to a value very close to 0.25 during most of the active mixing phase. The along-estuary variation in internal Froude number and interface elevation are roughly consistent with a steady, inviscid, two-layer hydraulic representation, and the fit is improved when a parameterization for interfacial stress is included. The analysis indicates that the mixing results from lateral straining of the shear layer, and that the rapid development of instabilities maintains the overall flow near the mixing threshold value of Ri = 0.25, even with continuous, active mixing. The entrainment coefficient can be estimated from salt conservation within the interfacial layer, based on the finding that the mixing maintains Ri = 0.25. This approach leads to a scaling estimate for the interfacial mixing coefficient based on the lateral spreading rate and the aspect ratio of the flow, yielding estimates of turbulent dissipation within the pycnocline that are consistent with estimates based on turbulence-resolving measurements.
    Description: NSF Grant Number: OCE 0926427; Devonshire Scholars program
    Description: 2017-12-12
    Keywords: Internal hydraulics ; Mixing ; Gradient Richardson number ; Estuary
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 3
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    Turbulent and numerical mixing in a salt wedge estuary : dependence on grid resolution, bottom roughness, and turbulence closure (2017)
    John Wiley & Sons
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2017. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 122 (2017): 692–712, doi:10.1002/2016JC011738.
    Description: The Connecticut River is a tidal salt wedge estuary, where advection of sharp salinity gradients through channel constrictions and over steeply sloping bathymetry leads to spatially heterogeneous stratification and mixing. A 3-D unstructured grid finite-volume hydrodynamic model (FVCOM) was evaluated against shipboard and moored observations, and mixing by both the turbulent closure and numerical diffusion were calculated. Excessive numerical mixing in regions with strong velocities, sharp salinity gradients, and steep bathymetry reduced model skill for salinity. Model calibration was improved by optimizing both the bottom roughness (z0), based on comparison with the barotropic tidal propagation, and the mixing threshold in the turbulence closure (steady state Richardson number, Rist), based on comparison with salinity. Whereas a large body of evidence supports a value of Rist ∼ 0.25, model skill for salinity improved with Rist ∼ 0.1. With Rist = 0.25, numerical mixing contributed about 1/2 the total mixing, while with Rist = 0.10 it accounted for ∼2/3, but salinity structure was more accurately reproduced. The combined contributions of numerical and turbulent mixing were quantitatively consistent with high-resolution measurements of turbulent mixing. A coarser grid had increased numerical mixing, requiring further reductions in turbulent mixing and greater bed friction to optimize skill. The optimal Rist for the fine grid case was closer to 0.25 than for the coarse grid, suggesting that additional grid refinement might correspond with Rist approaching the theoretical limit. Numerical mixing is rarely assessed in realistic models, but comparisons with high-resolution observations in this study suggest it is an important factor.
    Description: NSF Grant Number: OCE 0926427; ONR Grant Number: N00014-08-1-1115
    Description: 2017-07-28
    Keywords: Estuary ; Salt wedge ; Numerical mixing ; Turbulence closure ; Numerical model
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 4
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    Temperature and residence time controls on an estuarine harmful algal bloom : modeling hydrodynamics and Alexandrium fundyense in Nauset estuary (2015)
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © The Author(s), 2015. This is the author's version of the work. It is posted here by permission of Springer for personal use, not for redistribution. The definitive version was published in Estuaries and Coasts 38 (2015): 2240-2258, doi:10.1007/s12237-015-9949-z.
    Description: A highly resolved, 3-d model of hydrodynamics and Alexandrium fundyense in an estuarine embayment has been developed to investigate the physical and biological controls on a recurrent harmful algal bloom. Nauset estuary on Cape Cod (MA, USA) consists of three salt ponds connected to the ocean through a shallow marsh and network of tidal channels. The model is evaluated using quantitative skill metrics against observations of physical and biological conditions during three spring blooms. The A. fundyense model is based on prior model applications for the nearby Gulf of Maine, but notable modifications were made to be consistent with the Nauset observations. The dominant factors controlling the A. fundyense bloom in Nauset were the water temperature, which regulates organism growth rates, and the efficient retention of cells due to bathymetric constraints, stratification, and cell behavior (diel vertical migration). Spring-neap variability in exchange altered residence times, but for cell retention to be substantially longer than the cell doubling time required both active vertical migration and stratification that inhibits mixing of cells into the surface layer by wind and tidal currents. Unlike in the Gulf of Maine, the model results were relatively insensitive to cyst distributions or germination rates. Instead, in Nauset, high apparent rates of vegetative cell division by retained populations dictated bloom development. Cyst germination occurred earlier in the year than in the Gulf of Maine, suggesting that Nauset cysts have different controls on germination timing. The model results were relatively insensitive to nutrient concentrations, due to eutrophic conditions in the highly impacted estuary or due to limitations in the spatial and temporal resolution of nutrient sampling. Cell loss rates were inferred to be extremely low during the growth phase of the bloom, but increased rapidly during the final phase due to processes that remain uncertain. The validated model allows a quantitative assessment of the factors that contribute to the development of a recurrent harmful algal bloom and provides a framework for assessing similarly impacted coastal systems.
    Description: This work was supported by the National Science Foundation (OCE-0430724, OCE-0911031, and OCE-1314642) and National Institutes of Health (NIEHS-1P50-ES021923-01) through the Woods Hole Center for Oceans and Human Health, and by National Park Service (NPS) Cooperative Agreement H238015504.
    Description: 2016-03-17
    Keywords: Harmful algal bloom ; Hydrodynamic-biological model ; Alexandrium fundyense ; Residence time ; Cyst germination ; Growing degree day
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
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  • 5
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    Data and numerical methods for determining the dynamics and kinematics of Newark Bay, NJ (2019)
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    Publication Date: 2022-10-21
    Description: These observational data and numerical methods were used to investigate the subtidal salt balance of Newark Bay, a sub-estuarine network connected to the Hudson River estuary through New York Harbor. The moored data were collected in 2008 by Chant and Sommerfield, and in 2016 by Corlett, Geyer, and Ralston. Corlett devised the included numerical methods. Shipboard measurements of the vertical salinity profile near each mooring were used to reconstruct the tidally-varying vertical salinity profile from near-bed and near-surface salinity measurements at each mooring. The effects of tidal processes, such as frontal advection, on the exchange flow were investigated by applying the isohaline total exchange flow (TEF) framework to the mooring-based observations in multiple reaches of the estuarine network. In addition, a TEF-based salt balance was derived for the purpose of directly comparing the TEF framework with the standard Eulerian framework.
    Description: NSF Coastal SEES Grant #OCE-1325136 and Hudson River Foundation Grants #008/07A and #GF/01/17
    Keywords: Newark Bay ; Estuary ; Salt balance ; Exchange flow ; TEF
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 6
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    Bigger tides, less flooding: Effects of dredging on barotropic dynamics in a highly modified estuary. (2019)
    American Geophysical Union
    Details
    Publication Date: 2022-10-20
    Description: Author Posting. © American Geophysical Union, 2019. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research-Oceans 124 (2019): 196-211, doi:10.1029/2018JC014313.
    Description: Since the late nineteenth century, channel depths have more than doubled in parts of New York Harbor and the tidal Hudson River, wetlands have been reclaimed and navigational channels widened, and river flow has been regulated. To quantify the effects of these modifications, observations and numerical simulations using historical and modern bathymetry are used to analyze changes in the barotropic dynamics. Model results and water level records for Albany (1868 to present) and New York Harbor (1844 to present) recovered from archives show that the tidal amplitude has more than doubled near the head of tides, whereas increases in the lower estuary have been slight (〈10%). Channel deepening has reduced the effective drag in the upper tidal river, shifting the system from hyposynchronous (tide decaying landward) to hypersynchronous (tide amplifying). Similarly, modeling shows that coastal storm effects propagate farther landward, with a 20% increase in amplitude for a major event. In contrast, the decrease in friction with channel deepening has lowered the tidally averaged water level during discharge events, more than compensating for increased surge amplitude. Combined with river regulation that reduced peak discharges, the overall risk of extreme water levels in the upper tidal river decreased after channel construction, reducing the water level for the 10‐year recurrence interval event by almost 3 m. Mean water level decreased sharply with channel modifications around 1930, and subsequent decadal variability has depended both on river discharge and sea level rise. Channel construction has only slightly altered tidal and storm surge amplitudes in the lower estuary.
    Description: Funding for D. K. R., W. R. G., and C. K. S. was provided by NSF Coastal SEES awards OCE-1325136 and OCE-1325102. Funding for S.T. and H. Z. was provided by the U.S. Army Corps of Engineers (award W1927 N-14-2-0015), and NSF (Career Award 1455350). Data supporting this study are posted to Zenodo (https://doi.org/10.5281/zenodo.1298636).
    Description: 2019-06-11
    Keywords: Barotropic tides ; Flood frequency ; Storm surge ; Dredging ; Estuary ; Tidal river
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 7
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    Shifting sediment dynamics in the Coos Bay Estuary in response to 150 years of modification (2021)
    American Geophysical Union
    Details
    Publication Date: 2022-10-20
    Description: Author Posting. © American Geophysical Union, 2021. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 126(1), (2021): e2020JC016771, https://doi.org/10.1029/2020JC016771.
    Description: Estuaries worldwide have experienced modifications including channel deepening and intertidal reclamation over several centuries, resulting in altered fine sediment routing. Estuaries respond differently based on preexisting geometries, freshwater and sediment supplies, and extents and types of modification. The Coos Bay Estuary in Oregon is a relatively small estuary with complex geometry that has been extensively modified since 1865. A sediment transport model calibrated to modern conditions is used to assess the corresponding changes in sediment dynamics. Over ∼150 years, channel deepening (from ∼6.7 to 11 m), a 12% increase in area, and a 21% increase in volume have led to greater tidal amplitudes, salinity intrusion, and estuarine exchange flow. These changes have reduced current magnitudes, reduced bed stresses, and increased stratification, especially during rainy periods. Historically, fluvially derived sediment was dispersed across broad, deltaic‐style flats and through small tidal channels. Now, river water and sediments are diverted into a dredged navigation channel where an estuarine turbidity maximum (ETM) forms, with modeled concentrations 〉50 mg/L and measured concentrations 〉100 mg/L during discharge events. This “new” ETM supplies sediment to proximal embayments in the middle estuary and the shallow flats. Overall, sediment trapping during winter (and high river discharges) has increased more than two‐fold, owing to increased accommodation space, altered pathways of supply, and altered bed stresses and tidal asymmetries. In contrast to funnel‐shaped estuaries with simpler geometries and river‐channel transitions, these results highlight the importance of channel routing together with dredging in enhancing sediment retention and shifting pathways of sediment delivery.
    Description: The Science Collaborative is funded by the National Oceanic and Atmospheric Administration and managed by the University of Michigan Water Center (NAI4NOS4190145).
    Description: 2021-06-14
    Keywords: Dredging ; Estuarine turbidity maximum ; Estuary ; Modification ; Sediment
    Repository Name: Woods Hole Open Access Server
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  • 8
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    Sediment transport due to extreme events : the Hudson River estuary after tropical storms Irene and Lee (2014)
    John Wiley & Sons
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Geophysical Union, 2013. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 40 (2013): 5451–5455, doi:10.1002/2013GL057906.
    Description: Tropical Storms Irene and Lee in 2011 produced intense precipitation and flooding in the U.S. Northeast, including the Hudson River watershed. Sediment input to the Hudson River was approximately 2.7 megaton, about 5 times the long-term annual average. Rather than the common assumption that sediment is predominantly trapped in the estuary, observations and model results indicate that approximately two thirds of the new sediment remained trapped in the tidal freshwater river more than 1 month after the storms and only about one fifth of the new sediment reached the saline estuary. High sediment concentrations were observed in the estuary, but the model results suggest that this was predominantly due to remobilization of bed sediment. Spatially localized deposits of new and remobilized sediment were consistent with longer term depositional records. The results indicate that tidal rivers can intercept (at least temporarily) delivery of terrigenous sediment to the marine environment during major flow events.
    Description: This research was supported by grants from the Hudson Research Foundation (002/07A) and the National Science Foundation (1232928).
    Description: 2014-04-18
    Keywords: Sediment transport ; Tidal river ; Estuary ; Sediment trapping
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 9
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    Sediment transport time scales and trapping efficiency in a tidal river (2018)
    John Wiley & Sons
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Geophysical Union, 2017. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Earth Surface 122 (2017): 2042–2063, doi:10.1002/2017JF004337.
    Description: Observations and a numerical model are used to characterize sediment transport in the tidal Hudson River. A sediment budget over 11 years including major discharge events indicates the tidal fresh region traps about 40% of the sediment input from the watershed. Sediment input scales with the river discharge cubed, while seaward transport in the tidal river scales linearly, so the tidal river accumulates sediment during the highest discharge events. Sediment pulses associated with discharge events dissipate moving seaward and lag the advection speed of the river by a factor of 1.5 to 3. Idealized model simulations with a range of discharge and settling velocity were used to evaluate the trapping efficiency, transport rate, and mean age of sediment input from the watershed. The seaward transport of suspended sediment scales linearly with discharge but lags the river velocity by a factor that is linear with settling velocity. The lag factor is 30–40 times the settling velocity (mm s−1), so transport speeds vary by orders of magnitude from clay (0.01 mm s−1) to coarse silt (1 mm s−1). Deposition along the tidal river depends strongly on settling velocity, and a simple advection-reaction equation represents the loss due to settling on depositional shoals. The long-term discharge record is used to represent statistically the distribution of transport times, and time scales for settling velocities of 0.1 mm s−1 and 1 mm s−1 range from several months to several years for transport through the tidal river and several years to several decades through the estuary.
    Description: Hudson River Foundation Grant Number: 004/13A; National Science Foundation Grant Number: 1325136
    Description: 2018-05-02
    Keywords: Tidal river ; Sediment age ; Trapping efficiency ; Estuary ; Sediment transport
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 10
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    Salt wedge dynamics lead to enhanced sediment trapping within side embayments in high-energy estuaries (2017)
    John Wiley & Sons
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Geophysical Union, 2017. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 122 (2017): 2226–2242, doi:10.1002/2016JC012595.
    Description: Off-river coves and embayments provide accommodation space for sediment accumulation, particularly for sandy estuaries where high energy in the main channel prevents significant long-term storage of fine-grained material. Seasonal sediment inputs to Hamburg Cove in the Connecticut River estuary (USA) were monitored to understand the timing and mechanisms for sediment storage there. Unlike in freshwater tidal coves, sediment was primarily trapped here during periods of low discharge, when the salinity intrusion extended upriver to the cove entrance. During periods of low discharge and high sediment accumulation, deposited sediment displayed geochemical signatures consistent with a marine source. Numerical simulations reveal that low discharge conditions provide several important characteristics that maximize sediment trapping. First, these conditions allow the estuarine turbidity maximum (ETM) to be located in the vicinity of the cove entrance, which increases sediment concentrations during flood tide. Second, the saltier water in the main channel can enter the cove as a density current, enhancing near-bed velocities and resuspending sediment, providing an efficient delivery mechanism. Finally, higher salinity water accumulates in the deep basin of the cove, creating a stratified region that becomes decoupled from ebb currents, promoting retention of sediment in the cove. This process of estuarine-enhanced sediment accumulation in off-river coves will likely extend upriver during future sea level rise.
    Description: NSF Grant Numbers: EAR-1148244 , OCE-0926427
    Description: 2017-09-17
    Keywords: Sediment storage ; Estuary ; Estuarine turbidity maximum
    Repository Name: Woods Hole Open Access Server
    Type: Article
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