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  • Acid-base regulation; Alkalinity, total; Animalia; Aragonite saturation state; Benthic animals; Benthos; Bicarbonate ion; Boron/Calcium ratio; Calcification/Dissolution; Calcification rate of calcium carbonate; Calcifying fluid, aragonite saturation state; Calcifying fluid, carbonate ion; Calcifying fluid, dissolved inorganic carbon; Calcifying fluid, pH; Calcite saturation state; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Cnidaria; Coast and continental shelf; Event label; EXP; Experiment; Experiment duration; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Identification; Kaneohe_Bay; Laboratory experiment; Montipora capitata; North Pacific; OA-ICC; Ocean Acidification International Coordination Centre; Other studied parameter or process; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; pH change; Porites compressa; Ratio; Registration number of species; Salinity; Single species; Site; Species; Temperature; Temperature, water; Tropical; Type; Uniform resource locator/link to reference; Waimanalo_bay; δ11B  (1)
  • Australia; BIO; Biology; DATE/TIME; DEPTH, water; Rottnest_Is; Temperature, water  (1)
  • Bleach  (1)
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  • 1
    Publication Date: 2022-05-25
    Description: Author Posting. © The Author(s), 2015. This is the author's version of the work. It is posted here by permission of Elsevier for personal use, not for redistribution. The definitive version was published in Chemical Geology 398 (2015): 11-21, doi:10.1016/j.chemgeo.2015.01.019.
    Description: In preparing calcium carbonate samples for the measurement of various geochemical proxies, it is often necessary to remove contaminating phases while leaving the phase of interest altered as little as possible. Here we evaluate the effects of some common cleaning protocols (rinsing (H2O), bleach (~3% NaOCl), hydrogen peroxide (30%), sodium hydroxide (0.006 – 0.1 M NaOH), and acid leaching (0.05 N HNO3)) on the elemental (Li, B, Na, Mg, Sr, Ba, Pb, and U) and boron isotope composition of both biogenic and synthetic calcium carbonates formed in marine environments. In untreated samples, the presence of elevated concentrations of Na and Mg, the most abundant cations in seawater, can be reduced with minimal cleaning (e.g. rinsing). Cleaning protocols that cause partial dissolution are problematic, especially for samples that are compositionally heterogeneous because the remaining sample may be biased towards particular phases with distinctive elemental or isotopic compositions. We show that the use of either acid or unbuffered hydrogen peroxide can lead to partial dissolution which was associated with an increase in the U/Ca ratio of the remaining sample. Bleaching or rinsing with water did not result in significant sample dissolution, suggesting these cleaning techniques may be safely used on heterogeneous samples. Cleaning treatments, other than those resulting in significant dissolution of heterogeneous samples, had no significant effect on δ11B, suggesting that boron isotopes are generally robust to the effects of sample pre-treatment.
    Description: Research conducted at the University of Western Australia was supported by the Australian Research Council (ARC) Centre of Excellence for Coral Reef Studies. Research conducted at WHOI was supported by NSF grant OCE- 1338320. M.H. was supported by an ARC Super Science Fellowship (at UWA) and a NSF International Research Fellowship (at CSM). T.D. was supported by a NSF Graduate Research Fellowship. M.M. was supported by a Western Australian Premiers Fellowship and an ARC Laureate Fellowship. This study was financially supported in part by Strategic Young Researcher Overseas Visits Program for Accelerating Brain Circulation (G2301, the Japan Society of the Promotion of Science awarded to KT).
    Keywords: Coral ; Boron ; Bleach ; Cleaning ; Peroxide ; Aragonite
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
    Format: application/vnd.ms-excel
    Format: application/pdf
    Location Call Number Limitation Availability
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  • 2
    Publication Date: 2023-01-13
    Keywords: Australia; BIO; Biology; DATE/TIME; DEPTH, water; Rottnest_Is; Temperature, water
    Type: Dataset
    Format: text/tab-separated-values, 17242 data points
    Location Call Number Limitation Availability
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  • 3
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    PANGAEA
    In:  Supplement to: Schoepf, Verena; Jury, Christopher P; Toonen, Robert J; McCulloch, Malcolm T (2017): Coral calcification mechanisms facilitate adaptive responses to ocean acidification. Proceedings of the Royal Society B-Biological Sciences, 284(1868), 20172117, https://doi.org/10.1098/rspb.2017.2117
    Publication Date: 2024-03-15
    Description: Ocean acidification (OA) is a pressing threat to reef-building corals, but it remains poorly understood how coral calcification is inhibited by OA and whether corals could acclimatize and/or adapt to OA. Using a novel geochemical approach, we reconstructed the carbonate chemistry of the calcifying fluid in two coral species using both a pH and dissolved inorganic carbon (DIC) proxy (delta 11B and B/Ca, respectively). To address the potential for adaptive responses, both species were collected from two sites spanning a natural gradient in seawater pH and temperature, and then subjected to three pHT levels (8.04, 7.88, 7.71) crossed by two temperatures (control, +1.5°C) for 14 weeks. Corals from the site with naturally lower seawater pH calcified faster and maintained growth better under simulated OA than corals from the higher-pH site. This ability was consistently linked to higher pH yet lower DIC values in the calcifying fluid, suggesting that these differences are the result of long-term acclimatization and/or local adaptation to naturally lower seawater pH. Nevertheless, all corals elevated both pH and DIC significantly over seawater values, even under OA. This implies that high pH upregulation combined with moderate levels of DIC upregulation promote resistance and adaptive responses of coral calcification to OA.
    Keywords: Acid-base regulation; Alkalinity, total; Animalia; Aragonite saturation state; Benthic animals; Benthos; Bicarbonate ion; Boron/Calcium ratio; Calcification/Dissolution; Calcification rate of calcium carbonate; Calcifying fluid, aragonite saturation state; Calcifying fluid, carbonate ion; Calcifying fluid, dissolved inorganic carbon; Calcifying fluid, pH; Calcite saturation state; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Cnidaria; Coast and continental shelf; Event label; EXP; Experiment; Experiment duration; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Identification; Kaneohe_Bay; Laboratory experiment; Montipora capitata; North Pacific; OA-ICC; Ocean Acidification International Coordination Centre; Other studied parameter or process; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; pH change; Porites compressa; Ratio; Registration number of species; Salinity; Single species; Site; Species; Temperature; Temperature, water; Tropical; Type; Uniform resource locator/link to reference; Waimanalo_bay; δ11B
    Type: Dataset
    Format: text/tab-separated-values, 8102 data points
    Location Call Number Limitation Availability
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