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  • Climate - Biogeochemistry Interactions in the Tropical Ocean; SFB754  (2)
  • Acid-base regulation; Alkalinity, total; Alkalinity, total, standard deviation; Animalia; Aragonite saturation state; Aragonite saturation state, standard deviation; Automated CO2 analyzer (CIBA-Corning 965, UK); Baltic Sea; Benthic animals; Benthos; Bicarbonate; Bicarbonate ion; BIOACID; Biological Impacts of Ocean Acidification; Biomass/Abundance/Elemental composition; Boron/Calcium ratio; Boron/Calcium ratio, standard deviation; Bottles or small containers/Aquaria (〈20 L); Calcification/Dissolution; Calcite saturation state; Calcite saturation state, standard deviation; Calculated, see reference(s); Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbon dioxide; Carbon dioxide, partial pressure, standard deviation; Coast and continental shelf; Conductivity meter (WTW, Weilheim, Gemany); EPOCA; EUR-OCEANS; European network of excellence for Ocean Ecosystems Analysis; European Project on Ocean Acidification; Experimental treatment; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Growth/Morphology; ICP-OES, Inductively coupled plasma - optical emission spectrometry; Identification; Laboratory experiment; Magnesium/Calcium ratio; Magnesium/Calcium ratio, standard deviation; Measured; Mollusca; Mytilus edulis; Mytilus edulis, extrapallial fluid, boron/calcium ratio; Mytilus edulis, extrapallial fluid, boron/calcium ratio, standard deviation; Mytilus edulis, extrapallial fluid, magnesium/calcium ratio; Mytilus edulis, extrapallial fluid, magnesium/calcium ratio, standard deviation; Mytilus edulis, extrapallial fluid, strontium/calcium ratio; Mytilus edulis, extrapallial fluid, strontium/calcium ratio, standard deviation; Mytilus edulis, extrapallial fluid bicarbonate; Mytilus edulis, extrapallial fluid bicarbonate, standard deviation; Mytilus edulis, extrapallial fluid carbonate ion; Mytilus edulis, extrapallial fluid carbonate ion, standard deviation; Mytilus edulis, extrapallial fluid partial pressure of carbon dioxide; Mytilus edulis, extrapallial fluid partial pressure of carbon dioxide, standard deviation; Mytilus edulis, extrapallial fluid pH; Mytilus edulis, extrapallial fluid pH, standard deviation; Mytilus edulis, extrapallial fluid total carbon; Mytilus edulis, extrapallial fluid total carbon, standard deviation; Mytilus edulis, haemolymph, bicarbonate ion; Mytilus edulis, haemolymph, bicarbonate ion, standard deviation; Mytilus edulis, haemolymph, carbonate ion; Mytilus edulis, haemolymph, carbonate ion, standard deviation; Mytilus edulis, haemolymph, partial pressure of carbon dioxide; Mytilus edulis, haemolymph, partial pressure of carbon dioxide, standard deviation; Mytilus edulis, haemolymph, pH; Mytilus edulis, haemolymph, pH, standard deviation; Mytilus edulis, haemolymph, total dissolved inorganic carbon; Mytilus edulis, haemolymph, total dissolved inorganic carbon, standard deviation; Mytilus edulis, shell, δ11B; Mytilus edulis, shell, δ11B, standard deviation; Mytilus edulis, shell length; Mytilus edulis, shell length, standard deviation; Mytilus edulis, shell mass growth; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; pH, standard deviation; Replicates; Salinity; Salinity, standard deviation; Single species; Strontium/Calcium ratio; Strontium/Calcium ratio, standard deviation; Temperate; Temperature, standard deviation; Temperature, water  (1)
  • Acid-base regulation; Alkalinity, total; Animalia; Aragonite saturation state; Aragonite saturation state, standard deviation; Bicarbonate ion; BIOACID; Biological Impacts of Ocean Acidification; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calcite saturation state, standard deviation; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Coast and continental shelf; Echinodermata; Figure; Fluorescence; Fluorescence, standard deviation; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Laboratory experiment; Molecular mass; North Atlantic; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; pH, extracellular; pH, intracellular; pH, standard deviation; Ratio; Recovery; Replicate; Salinity; Salinity, standard deviation; Single species; Slope inclination; Species; Strongylocentrotus droebachiensis; Temperate; Temperature, water; Temperature, water, standard deviation; Time in minutes; Time in seconds; Treatment; Zooplankton  (1)
Document type
Keywords
Publisher
Years
  • 1
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    Unknown
    PANGAEA
    In:  Supplement to: Kiko, Rainer; Hauss, Helena; Dengler, Marcus; Sommer, Stefan; Melzner, Frank (2015): The squat lobster Pleuroncodes monodon tolerates anoxic “dead zone” conditions off Peru. Marine Biology, 162(9), 1913-1921, https://doi.org/10.1007/s00227-015-2709-6
    Publication Date: 2023-10-28
    Description: Sampling was conducted during RV Meteor cruise M93 in austral summer 2013 in an area from 11ºS to 14ºS and approximately 120 km offshore to within 10 km of the Peruvian coast. Specimens were collected using a Hydrobios Multinet Maxi (0.5 m2 mouth opening, 330 µm mesh size, 9 nets) and a WP-2 net (Hydrobios, 0.26 m2 mouth opening, 200 µm mesh size). P. monodon were identified according to http://researchdata.museum.vic.gov.au/squatlobster/delta/deltakey.html. Specimens were transferred into filtered, well-oxygenated seawater immediately after the catch and maintained for 4 to 16 hours prior to physiological experiments. Maintenance and physiological experiments were conducted at 13°C as the temperature observed at 100 to 200 m depth in the OMZ ranged from 13.7 to 12.7°C.
    Keywords: Climate - Biogeochemistry Interactions in the Tropical Ocean; SFB754
    Type: Dataset
    Format: application/zip, 2 datasets
    Location Call Number Limitation Availability
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  • 2
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    PANGAEA
    In:  Supplement to: Kiko, Rainer; Hauss, Helena; Buchholz, Friedrich; Melzner, Frank (2016): Ammonium excretion and oxygen respiration of tropical copepods and euphausiids exposed to oxygen minimum zone conditions. Biogeosciences, 13(8), 2241-2255, https://doi.org/10.5194/bg-13-2241-2016
    Publication Date: 2023-10-28
    Description: Respiration and ammonium excretion rates at different oxygen partial pressure were measured for calanoid copepods and euphausiids from the Eastern Tropical South Pacific and the Eastern Tropical North Atlantic. All specimens used for experiments were caught in the upper 400 m of the water column and only animals appearing unharmed and fit were used for experiments. Specimens were sorted, identified and transferred into aquaria with filtered, well-oxygenated seawater immediately after the catch and maintained for 1 to 13 hours prior to physiological experiments at the respective experimental temperature. Maintenance and physiological experiments were conducted in darkness in temperature-controlled incubators at 11, 13 or 23 degree C (±1). Before and during experiments, animals were not fed. Respiration and ammonium excretion rate measurements (both in µmol h-1 gDW-1) at varying oxygen concentrations were conducted in 12 to 60 mL gas-tight glass bottles. These were equipped with oxygen microsensors (ø 3 mm, PreSens Precision Sensing GmbH, Regensburg, Germany) attached to the inner wall of the bottles to monitor oxygen concentrations non-invasively. Read-out of oxygen concentrations was conducted using multi-channel fiber optic oxygen transmitters (Oxy-4 and Oxy-10 mini, PreSens Precision Sensing GmbH, Regensburg, Germany) that were connected via optical fibers to the outside of the bottles directly above the oxygen microsensor spots. Measurements were started at pre-adjusted oxygen and carbon dioxide levels. For this, seawater stocks with adjusted pO2 and pCO2 were prepared by equilibrating 3 to 4 L of filtered (0.2 µm filter Whatman GFF filter) and UV - sterilized (Aqua Cristal UV C 5 Watt, JBL GmbH & Co. KG, Neuhofen, Germany) water with premixed gases (certified gas mixtures from Air Liquide) for 4 hours at the respective experimental temperature. pCO2 levels were chosen to mimic the environmental pCO2 in the ETSP OMZ or the ETNA OMZ. Experimental runs were conducted with 11 to 15 trial incubations (1 or 2 animals per incubation bottle and three different treatment levels) and three animal-free control incubations (one per experimental treatment). During each run, experimental treatments comprised 100% air saturation as well as one reduced air saturation level with and without CO2. Oxygen concentrations in the incubation bottles were recorded every 5 min using the fiber-optic microsensor system and data recording for respiration rate determination was started immediately after all animals were transferred. Respiration rates were calculated from the slope of oxygen decrease over selected time intervals. Chosen time intervals were 20 to 105 min long. No respiration rate was calculated for the first 20 to 60 min after animal transfer to avoid the impact of enhanced activity of the animal or changes in the bottle water temperature during initial handling on the respiration rates and oxygen readings. Respiration rates were obtained over a maximum of 16 hours incubation time and slopes were linear at normoxia to mild hypoxia. Respiration rates in animal-free control bottles were used to correct for microbial activity. These rates were 〈 2% of animal respiration rates at normoxia. Samples for the measurement of ammonium concentrations were taken after 2 to 10 hours incubation time. Ammonium concentration was determined fluorimetrically (Holmes et al., 1999). Ammonium excretion was calculated as the concentration difference between incubation and animal-free control bottles. Some specimens died during the respiration and excretion rate measurements, as indicated by a cessation of respiration. No excretion rate measurements were conducted in this case, but the oxygen level at which the animal died was noted.
    Keywords: Climate - Biogeochemistry Interactions in the Tropical Ocean; SFB754
    Type: Dataset
    Format: application/zip, 2 datasets
    Location Call Number Limitation Availability
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  • 3
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    PANGAEA
    In:  Supplement to: Heinemann, Agnes; Fietzke, Jan; Melzner, Frank; Böhm, Florian; Thomsen, Jörn; Garbe-Schönberg, Dieter; Eisenhauer, Anton (2012): Conditions of Mytilus edulis extracellular body fluids and shell composition in a pH-treatment experiment: Acid-base status, trace elements and d11B. Geochemistry, Geophysics, Geosystems, 13, Q01005, https://doi.org/10.1029/2011GC003790
    Publication Date: 2024-03-15
    Description: Mytilus edulis were cultured for 3 months under six different seawater pCO2 levels ranging from 380 to 4000 µatm. Specimen were taken from Kiel Fjord (Western Baltic Sea, Germany) which is a habitat with high and variable seawater pCO2 and related shifts in carbonate system speciation (e.g., low pH and low CaCO3 saturation state). Hemolymph (HL) and extrapallial fluid (EPF) samples were analyzed for pH and total dissolved inorganic carbon (CT) to calculate pCO2 and [HCO3]. A second experiment was conducted for 2 months with three different pCO2 levels (380, 1400 and 4000 µatm). Boron isotopes (delta11B) were investigated by LA-MC-ICP-MS (Laser Ablation-Multicollector-Inductively Coupled Plasma-Mass Spectrometry) in shell portions precipitated during experimental treatment time. Additionally, elemental ratios (B/Ca, Mg/Ca and Sr/Ca) in the EPF of specimen from the second experiment were measured via ICP-OES (Inductively Coupled Plasma-Optical Emission Spectrometry). Extracellular pH was not significantly different in HL and EPF but systematically lower than ambient water pH. This is due to high extracellular pCO2 values, a prerequisite for metabolic CO2 excretion. No accumulation of extracellular [HCO3] was measured. Elemental ratios (B/Ca, Mg/Ca and Sr/Ca) in the EPF increased slightly with pH which is in accordance with increasing growth and calcification rates at higher seawater pH values. Boron isotope ratios were highly variable between different individuals but also within single shells. This corresponds to a high individual variability in fluid B/Ca ratios and may be due to high boron concentrations in the organic parts of the shell. The mean delta11B value shows no trend with pH but appears to represent internal pH (EPF) rather than ambient water pH.
    Keywords: Acid-base regulation; Alkalinity, total; Alkalinity, total, standard deviation; Animalia; Aragonite saturation state; Aragonite saturation state, standard deviation; Automated CO2 analyzer (CIBA-Corning 965, UK); Baltic Sea; Benthic animals; Benthos; Bicarbonate; Bicarbonate ion; BIOACID; Biological Impacts of Ocean Acidification; Biomass/Abundance/Elemental composition; Boron/Calcium ratio; Boron/Calcium ratio, standard deviation; Bottles or small containers/Aquaria (〈20 L); Calcification/Dissolution; Calcite saturation state; Calcite saturation state, standard deviation; Calculated, see reference(s); Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbon dioxide; Carbon dioxide, partial pressure, standard deviation; Coast and continental shelf; Conductivity meter (WTW, Weilheim, Gemany); EPOCA; EUR-OCEANS; European network of excellence for Ocean Ecosystems Analysis; European Project on Ocean Acidification; Experimental treatment; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Growth/Morphology; ICP-OES, Inductively coupled plasma - optical emission spectrometry; Identification; Laboratory experiment; Magnesium/Calcium ratio; Magnesium/Calcium ratio, standard deviation; Measured; Mollusca; Mytilus edulis; Mytilus edulis, extrapallial fluid, boron/calcium ratio; Mytilus edulis, extrapallial fluid, boron/calcium ratio, standard deviation; Mytilus edulis, extrapallial fluid, magnesium/calcium ratio; Mytilus edulis, extrapallial fluid, magnesium/calcium ratio, standard deviation; Mytilus edulis, extrapallial fluid, strontium/calcium ratio; Mytilus edulis, extrapallial fluid, strontium/calcium ratio, standard deviation; Mytilus edulis, extrapallial fluid bicarbonate; Mytilus edulis, extrapallial fluid bicarbonate, standard deviation; Mytilus edulis, extrapallial fluid carbonate ion; Mytilus edulis, extrapallial fluid carbonate ion, standard deviation; Mytilus edulis, extrapallial fluid partial pressure of carbon dioxide; Mytilus edulis, extrapallial fluid partial pressure of carbon dioxide, standard deviation; Mytilus edulis, extrapallial fluid pH; Mytilus edulis, extrapallial fluid pH, standard deviation; Mytilus edulis, extrapallial fluid total carbon; Mytilus edulis, extrapallial fluid total carbon, standard deviation; Mytilus edulis, haemolymph, bicarbonate ion; Mytilus edulis, haemolymph, bicarbonate ion, standard deviation; Mytilus edulis, haemolymph, carbonate ion; Mytilus edulis, haemolymph, carbonate ion, standard deviation; Mytilus edulis, haemolymph, partial pressure of carbon dioxide; Mytilus edulis, haemolymph, partial pressure of carbon dioxide, standard deviation; Mytilus edulis, haemolymph, pH; Mytilus edulis, haemolymph, pH, standard deviation; Mytilus edulis, haemolymph, total dissolved inorganic carbon; Mytilus edulis, haemolymph, total dissolved inorganic carbon, standard deviation; Mytilus edulis, shell, δ11B; Mytilus edulis, shell, δ11B, standard deviation; Mytilus edulis, shell length; Mytilus edulis, shell length, standard deviation; Mytilus edulis, shell mass growth; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; pH, standard deviation; Replicates; Salinity; Salinity, standard deviation; Single species; Strontium/Calcium ratio; Strontium/Calcium ratio, standard deviation; Temperate; Temperature, standard deviation; Temperature, water
    Type: Dataset
    Format: text/tab-separated-values, 531 data points
    Location Call Number Limitation Availability
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  • 4
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    Unknown
    PANGAEA
    In:  Supplement to: Stumpp, Meike; Hu, Marian Y; Melzner, Frank; Gutowska, Magdalena A; Dorey, Narimane; Himmerkus, Nina; Holtmann, Wiebke C; Dupont, Sam; Thorndyke, Mike; Bleich, Markus (2012): Acidified seawater impacts sea urchin larvae pH regulatory systems relevant for calcification. Proceedings of the National Academy of Sciences, 109(44), 18192-18197, https://doi.org/10.1073/pnas.1209174109
    Publication Date: 2024-03-15
    Description: Calcifying echinoid larvae respond to changes in seawater carbonate chemistry with reduced growth and developmental delay. To date, no information exists on how ocean acidification acts on pH homeostasis in echinoderm larvae. Understanding acid-base regulatory capacities is important because intracellular formation and maintenance of the calcium carbonate skeleton is dependent on pH homeostasis. Using H(+)-selective microelectrodes and the pH-sensitive fluorescent dye BCECF, we conducted in vivo measurements of extracellular and intracellular pH (pH(e) and pH(i)) in echinoderm larvae. We exposed pluteus larvae to a range of seawater CO(2) conditions and demonstrated that the extracellular compartment surrounding the calcifying primary mesenchyme cells (PMCs) conforms to the surrounding seawater with respect to pH during exposure to elevated seawater pCO(2). Using FITC dextran conjugates, we demonstrate that sea urchin larvae have a leaky integument. PMCs and spicules are therefore directly exposed to strong changes in pH(e) whenever seawater pH changes. However, measurements of pH(i) demonstrated that PMCs are able to fully compensate an induced intracellular acidosis. This was highly dependent on Na(+) and HCO(3)(-), suggesting a bicarbonate buffer mechanism involving secondary active Na(+)-dependent membrane transport proteins. We suggest that, under ocean acidification, maintained pH(i) enables calcification to proceed despite decreased pH(e). However, this probably causes enhanced costs. Increased costs for calcification or cellular homeostasis can be one of the main factors leading to modifications in energy partitioning, which then impacts growth and, ultimately, results in increased mortality of echinoid larvae during the pelagic life stage.
    Keywords: Acid-base regulation; Alkalinity, total; Animalia; Aragonite saturation state; Aragonite saturation state, standard deviation; Bicarbonate ion; BIOACID; Biological Impacts of Ocean Acidification; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calcite saturation state, standard deviation; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Coast and continental shelf; Echinodermata; Figure; Fluorescence; Fluorescence, standard deviation; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Laboratory experiment; Molecular mass; North Atlantic; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; pH, extracellular; pH, intracellular; pH, standard deviation; Ratio; Recovery; Replicate; Salinity; Salinity, standard deviation; Single species; Slope inclination; Species; Strongylocentrotus droebachiensis; Temperate; Temperature, water; Temperature, water, standard deviation; Time in minutes; Time in seconds; Treatment; Zooplankton
    Type: Dataset
    Format: text/tab-separated-values, 41045 data points
    Location Call Number Limitation Availability
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