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  • Accession number; Accession number, link; Area/locality; Date/Time of event; Depth, bottom/max; Depth, top/min; DIVER; Latitude of event; Longitude of event; Milos_052013; Sample code/label; Sampling by diver; Species code; Sponge Milos Collection  (1)
  • Accession number; Accession number, link; Area/locality; Date/Time of event; Depth, bottom/max; Depth, top/min; DIVER; Latitude of event; Longitude of event; Rovinj_082008; Sampling by diver; Species; Species code  (1)
  • 1
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    Unknown
    Individual codes, GenBank accession numbers and GenBank accession links for Mediterranean sponges (2015)
    PANGAEA
    In:  Supplement to: Horn, Hannes; Cheng, Cheng; Edrada-Ebel, RuAngelie; Hentschel, Ute; Abdelmohsen, Usama Ramadan (2015): Draft genome sequences of three chemically rich actinomycetes isolated from Mediterranean sponges. Marine Genomics, https://doi.org/10.1016/j.margen.2015.10.003
    Details
    Publication Date: 2023-01-13
    Description: Metabolomic analysis has shown the chemical richness of the sponge-associated actinomycetes Streptomyces sp. SBT349, Nonomureae sp. SBT364, and Nocardiopsis sp. SBT366. The genomes of these actinomycetes were sequenced and the genomic potential for secondary metabolism was evaluated. Their draft genomes have sizes of 8.0, 10, and 5.8Mb having 687, 367, and 179 contigs with a GC content of 71.6, 70.7, and 72.7%, respectively. Moreover, antiSMASH 3.0 predicted 108, 149, and 75 secondary metabolite gene clusters, respectively which highlight the metabolic capacity of the three actinomycete species to produce diverse classes of natural products.
    Keywords: Accession number; Accession number, link; Area/locality; Date/Time of event; Depth, bottom/max; Depth, top/min; DIVER; Latitude of event; Longitude of event; Milos_052013; Sample code/label; Sampling by diver; Species code; Sponge Milos Collection
    Type: Dataset
    Format: text/tab-separated-values, 21 data points
    Location Call Number Limitation Availability
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    DATA PANGAEA
  • 2
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    Unknown
    Individual codes, GenBank accession numbers and GenBank accession links for sponge-associated actinobacterial isolates (2015)
    PANGAEA
    In:  Supplement to: Horn, Hannes; Hentschel, Ute; Abdelmohsen, Usama Ramadan (2015): Mining Genomes of Three Marine Sponge-Associated Actinobacterial Isolates for Secondary Metabolism. Genome Announcements, 3(5), e01106-15, https://doi.org/10.1128/genomeA.01106-15
    Details
    Publication Date: 2023-01-13
    Description: Here, we report the draft genome sequences of three actinobacterial isolates, Micromonospora sp. RV43, Rubrobacter sp. RV113, and Nocardiopsis sp. RV163 that had previously been isolated from Mediterranean sponges. The draft genomes were analyzed for the presence of gene clusters indicative of secondary metabolism using antiSMASH 3.0 and NapDos pipelines. Our findings demonstrated the chemical richness of sponge-associated actinomycetes and the efficacy of genome mining in exploring the genomic potential of sponge-derived actinomycetes.
    Keywords: Accession number; Accession number, link; Area/locality; Date/Time of event; Depth, bottom/max; Depth, top/min; DIVER; Latitude of event; Longitude of event; Rovinj_082008; Sampling by diver; Species; Species code
    Type: Dataset
    Format: text/tab-separated-values, 21 data points
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
    DATA PANGAEA
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