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  • Baltic Sea; BED; Local adaptation; methylation call; population genomics; SNP; three-spined stickleback; Whole genome sequencing  (2)
  • AL594; AL594_0_Underway-1; Alkor (1990); Calculated from internal temperature and conductivity; Conductivity; DAM_Underway; DAM Underway Research Data; DATE/TIME; DEPTH, water; Digital oceanographic thermometer, Sea-Bird, SBE 38; LATITUDE; LONGITUDE; Quality flag, salinity; Quality flag, water temperature; Salinity; SALINO; Salinometer; Seadatanet flag: Data quality control procedures according to SeaDataNet (2010); Temperature, water; Temperature, water, internal; Thermosalinograph; Thermosalinograph (TSG), Sea-Bird, SBE 21 SEACAT; TSG  (1)
Document type
Keywords
Publisher
Years
  • 1
    facet.materialart.
    Unknown
    High quality G-to-A SNPs from the genomes of 96 wild caught three-spine sticklebacks (2019)
    PANGAEA
    Details
    Publication Date: 2023-01-13
    Description: To improve the methylation estimates in our study, we corrected for SNPs, which could have led to a wrong methylation call. The excluded positions were derived with custom written perl scripts from C-to-T and G-to-A-SNPs with genotype quality of 20 and a minimum allele frequency of 0.005 from the 96 wild caught three-spined sticklebacks with a combination of custom written Perl and R-scripts using packages from methylkit and GenomicRanges. This BED-file contains the G-to-A-SNPs, in which the first field is the name of the chromosome; the second describes the start position and the third the end position of the feature in standard chromosomal coordinates.
    Keywords: Baltic Sea; BED; Local adaptation; methylation call; population genomics; SNP; three-spined stickleback; Whole genome sequencing
    Type: Dataset
    Format: application/zip, 5.8 MBytes
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
    DATA PANGAEA
  • 2
    facet.materialart.
    Unknown
    High quality C-to-T SNPs from the genomes of 96 wild caught three-spine sticklebacks (2019)
    PANGAEA
    Details
    Publication Date: 2023-01-13
    Description: To improve the methylation estimates in our study, we corrected for SNPs, which could have led to a wrong methylation call. The excluded positions were derived with custom written perl scripts from C-to-T and G-to-A-SNPs with genotype quality of 20 and a minimum allele frequency of 0.005 from the 96 wild caught three-spined sticklebacks with a combination of custom written Perl and R-scripts using packages from methylkit and GenomicRanges. This BED-file contains the C-to-T SNPs, in which the first field is the name of the chromosome; the second describes the start position and the third the end position of the feature in standard chromosomal coordinates.
    Keywords: Baltic Sea; BED; Local adaptation; methylation call; population genomics; SNP; three-spined stickleback; Whole genome sequencing
    Type: Dataset
    Format: application/zip, 5.8 MBytes
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
    DATA PANGAEA
  • 3
    facet.materialart.
    Unknown
    Continuous thermosalinograph oceanography along RV ALKOR cruise track AL594 (2023)
    PANGAEA
    Details
    Publication Date: 2024-01-26
    Description: Underway temperature and salinity data was collected along the cruise track with a thermosalinograph (TSG) together with a SBE38 Thermometer. Both systems worked throughout the cruise. While temperature is taken at the water inlet in about 4 m depth, salinity is estimated within the interior TSG from conductivity and interior temperature. No temperature calibration was performed. Salinity was calibrated with independent water samples taken at the water inlet. For details to all processing steps see Data Processing Report.
    Keywords: AL594; AL594_0_Underway-1; Alkor (1990); Calculated from internal temperature and conductivity; Conductivity; DAM_Underway; DAM Underway Research Data; DATE/TIME; DEPTH, water; Digital oceanographic thermometer, Sea-Bird, SBE 38; LATITUDE; LONGITUDE; Quality flag, salinity; Quality flag, water temperature; Salinity; SALINO; Salinometer; Seadatanet flag: Data quality control procedures according to SeaDataNet (2010); Temperature, water; Temperature, water, internal; Thermosalinograph; Thermosalinograph (TSG), Sea-Bird, SBE 21 SEACAT; TSG
    Type: Dataset
    Format: text/tab-separated-values, 116579 data points
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
    DATA PANGAEA
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