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Individual codes, GenBank accession numbers and GenBank accession links for Mediterranean sponges (2015)

Horn, Hannes ; Cheng, Cheng ; Edrada-Ebel, RuAngelie ; [et al.]

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In: Supplement to: Horn, Hannes; Cheng, Cheng; Edrada-Ebel, RuAngelie; Hentschel, Ute; Abdelmohsen, Usama Ramadan (2015): Draft genome sequences of three chemically rich actinomycetes isolated from Mediterranean sponges. Marine Genomics, https://doi.org/10.1016/j.margen.2015.10.003

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Publication Date: 2023-01-13

Description: Metabolomic analysis has shown the chemical richness of the sponge-associated actinomycetes Streptomyces sp. SBT349, Nonomureae sp. SBT364, and Nocardiopsis sp. SBT366. The genomes of these actinomycetes were sequenced and the genomic potential for secondary metabolism was evaluated. Their draft genomes have sizes of 8.0, 10, and 5.8Mb having 687, 367, and 179 contigs with a GC content of 71.6, 70.7, and 72.7%, respectively. Moreover, antiSMASH 3.0 predicted 108, 149, and 75 secondary metabolite gene clusters, respectively which highlight the metabolic capacity of the three actinomycete species to produce diverse classes of natural products.

Keywords: Accession number; Accession number, link; Area/locality; Date/Time of event; Depth, bottom/max; Depth, top/min; DIVER; Latitude of event; Longitude of event; Milos_052013; Sample code/label; Sampling by diver; Species code; Sponge Milos Collection

Type: Dataset

Format: text/tab-separated-values, 21 data points

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Individual codes, GenBank accession numbers and GenBank accession links for Mediterranean marine sponge associated actinomycetes (2015)

Cheng, Cheng ; MacIntyre, Lynsey ; Abdelmohsen, Usama Ramadan ; [et al.]

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Publication Date: 2023-01-13

Keywords: Accession number; Accession number, link; Area/locality; Crete_112013; Date/Time of event; Depth, bottom/max; Depth, top/min; DIVER; Event label; Latitude of event; Longitude of event; Milos_052013; Sampling by diver; Species code; Sponge Crete Collection; Sponge Milos Collection

Type: Dataset

Format: text/tab-separated-values, 276 data points

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Metadata and NCBI-Accession numbers of Vazella pourtalesii metagenomes from the Scotian Shelf (Canada) in summer 2017 (2020)

Bayer, Kristina ; Busch, Kathrin ; Kenchington, Ellen L ; [et al.]

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Publication Date: 2024-03-06

Description: Until now few studies have explored the microbiomes of glass sponges (Hexactinellida). Vazella pourtalesii forms globally unique, monospecific sponge grounds under low-oxygen conditions on the Scotian Shelf. Using metagenomic binning we performed detailed analyses of the metabolic functional capacities of four V. pourtalesii-associated microbial taxa (SAR324, Patescibacteria, Nanoarchaeota, and Crenarchaeota).

Keywords: Accession number, genetics; Analytical method; Area/locality; Campaign; CTD/Rosette; CTD-RO; DATE/TIME; Deep-sea Sponge Grounds Ecosystems of the North Atlantic; DEPTH, water; Device type; Event label; glass sponge; Hexactinellida; Identification; LATITUDE; LONGITUDE; Martha L. Black; metagenomic binning; microbial metabolism; microbiome; MLB2017001; MLB2017001_006; MLB2017001_015; MLB2017001_017; MOOR; Mooring; OTNMoor_275; Porifera; Remote operated platform for oceanography; ROPOS; ROPOS 2030; Sample code/label; Sample comment; Sample type; South Atlantic Ocean; SponGES; Station label; symbiosis; Well-known text

Type: Dataset

Format: text/tab-separated-values, 168 data points

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Transcriptome expression in Periphylla periphylla exposed to sediment plumes and increasing temperatures (2023)

Stenvers, Vanessa ; Hauss, Helena ; Schmittmann, Lara ; [et al.]

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Publication Date: 2024-06-25

Description: This dataset comprises gene expression data in the deep pelagic jellyfish Periphylla periphylla exposed to anthropogenic disturbance. Specifically, we tested the effects of ocean warming and sediment plumes from deep-sea mining during ex situ experiments, using Periphylla collected in the Lurefjord and Sognefjord, Norway, in 2021. Gene expression is given in normalised counts for each expressed transcript (for both the temperature and suspended sediment separately). Moreover, this dataset lists all significantly expressed transcripts and their summary statistics (e.g. log2 fold change), as identified with Likelihood Ratio Tests (LRT) in DESeq2 (Love et al. 2014), in addition to transcript annotations performed with Trinotate v3.2.1 searching the Blastx, Blastp, Pfam, UniProt-SwissProt, GO, eggNOG and KEGG databases (Bryant et al. 2017).

Keywords: BC; Binary Object; Binary Object (File Size); Binary Object (Media Type); Box corer; Cnidaria; Deep-sea mining; File content; GPF 20‐3_089H, NAPTRAM; iAtlantic; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; Jellyfish; Lurefjord_Norway_Periphylla_Sampling_1; Norwegian fjord; ocean warming; Periphylla periphylla; SO279; SO279_8-1; Sognefjord_Norway_Periphylla_Sampling_2; Sonne_2; South Atlantic Ocean; Transcriptomic analysis; Transcriptomics

Type: Dataset

Format: text/tab-separated-values, 2 data points

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