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  • Oxford University Press (OUP)  (2)
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  • Oxford University Press (OUP)  (2)
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  • 1
    In: GigaScience, Oxford University Press (OUP), Vol. 9, No. 11 ( 2020-11-10)
    Abstract: Cephalopods represent a rich system for investigating the genetic basis underlying organismal novelties. This diverse group of specialized predators has evolved many adaptations including proteinaceous venom. Of particular interest is the blue-ringed octopus genus (Hapalochlaena), which are the only octopods known to store large quantities of the potent neurotoxin, tetrodotoxin, within their tissues and venom gland. Findings To reveal genomic correlates of organismal novelties, we conducted a comparative study of 3 octopod genomes, including the Southern blue-ringed octopus (Hapalochlaena maculosa). We present the genome of this species and reveal highly dynamic evolutionary patterns at both non-coding and coding organizational levels. Gene family expansions previously reported in Octopus bimaculoides (e.g., zinc finger and cadherins, both associated with neural functions), as well as formation of novel gene families, dominate the genomic landscape in all octopods. Examination of tissue-specific genes in the posterior salivary gland revealed that expression was dominated by serine proteases in non–tetrodotoxin-bearing octopods, while this family was a minor component in H. maculosa. Moreover, voltage-gated sodium channels in H. maculosa contain a resistance mutation found in pufferfish and garter snakes, which is exclusive to the genus. Analysis of the posterior salivary gland microbiome revealed a diverse array of bacterial species, including genera that can produce tetrodotoxin, suggestive of a possible production source. Conclusions We present the first tetrodotoxin-bearing octopod genome H. maculosa, which displays lineage-specific adaptations to tetrodotoxin acquisition. This genome, along with other recently published cephalopod genomes, represents a valuable resource from which future work could advance our understanding of the evolution of genomic novelty in this family.
    Type of Medium: Online Resource
    ISSN: 2047-217X
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2020
    detail.hit.zdb_id: 2708999-X
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  • 2
    Online Resource
    Online Resource
    Oxford University Press (OUP) ; 2016
    In:  Journal of the Royal Statistical Society Series A: Statistics in Society Vol. 179, No. 2 ( 2016-02-01), p. 481-511
    In: Journal of the Royal Statistical Society Series A: Statistics in Society, Oxford University Press (OUP), Vol. 179, No. 2 ( 2016-02-01), p. 481-511
    Abstract: This is a comparative study of the multiple ways of measuring dissimilarities between state sequences. The originality of the study is the focus put on the differences between sequences that are sociologically important when studying life courses such as family life trajectories or professional careers. These differences essentially concern the sequencing (the order in which successive states appear), the timing and the duration of the spells in successive states. The study examines the sensitivity of the measures to these three aspects analytically and empirically by means of simulations. Even if some distance measures underperform, the study shows that there is no universally optimal distance index, and that the choice of a measure depends on which aspect we want to focus on. From the review and simulation results, the paper derives guidelines to help the end user to choose the right dissimilarity measure for her or his research objectives. This study also introduces novel ways of measuring dissimilarities that overcome some flaws in existing measures.
    Type of Medium: Online Resource
    ISSN: 0964-1998 , 1467-985X
    RVK:
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2016
    detail.hit.zdb_id: 204794-9
    detail.hit.zdb_id: 1490715-X
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