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  • Microbiology Society  (5)
  • 1
    Online Resource
    Online Resource
    Haloferula luteola sp. nov., an endophytic bacterium isolated from the root of a halophyte, Rosa rugosa, and emended description of the genus Haloferula
    Microbiology Society ; 2011
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 61, No. 8 ( 2011-08-01), p. 1837-1841
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 61, No. 8 ( 2011-08-01), p. 1837-1841
    Abstract: A Gram-negative, non-spore-forming, endophytic bacterium, strain YC6886 T , was isolated from the root of a halophyte, Rosa rugosa , which inhabits coastal areas of Namhae Island off the southern coast of Korea. Cells were non-motile, obligately aerobic rods and formed pale-yellow colonies. The isolate grew at 4–32 °C (optimum 25–28 °C) and at pH 6.5–9.5 (optimum pH 7.5) and grew optimally with 2–3 % (w/v) NaCl, but NaCl was not an absolute requirement for growth. Strain YC6886 T produced yellow carotenoid pigments. Strain YC6886 T exhibited the highest 16S rRNA gene sequence similarity with Haloferula sargassicola MN1-1037 T (97.4 %). Sequence similarities between strain YC6886 T and other members of the genus Haloferula were 93.9–94.7 %. DNA–DNA relatedness between strain YC6886 T and H. sargassicola KCTC 22202 T and Haloferula rosea KCTC 22201 T was 27 and 15 %, respectively. The major fatty acids were iso-C 14 : 0 , C 16 : 0 and C 16 : 1 ω9 c and minor components were C 14 : 0 , C 18 : 0 and anteiso-C 15 : 0 . The major respiratory quinone was menaquinone 9 and the DNA G+C content was 58.5 mol%. The polar lipid profile was composed of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, an unknown phospholipid and an unknown phosphoglycolipid. On the basis of phenotypic, chemotaxonomic, DNA–DNA hybridization and phylogenetic analysis, strain YC6886 T represents a novel species in the genus Haloferula , for which the name Haloferula luteola sp. nov. is proposed. The type strain is YC6886 T ( = KCTC 22447 T  = DSM 21608 T ). An emended description of the genus Haloferula is also presented.
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.022772-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2011
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 2
    Online Resource
    Online Resource
    Chitinophaga eiseniae sp. nov., isolated from vermicompost
    Microbiology Society ; 2011
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 61, No. 10 ( 2011-10-01), p. 2373-2378
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 61, No. 10 ( 2011-10-01), p. 2373-2378
    Abstract: A Gram-negative, rod-shaped bacterial strain, YC6729 T , was isolated from vermicompost collected at Masan, Korea, and its taxonomic position was investigated by a polyphasic taxonomic approach. Strain YC6729 T grew optimally at 30 °C and at pH 6.5–8.5. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain YC6729 T belongs to the genus Chitinophaga in the family Chitinophagaceae . It was related most closely to Chitinophaga terrae KP01 T (96.4 % 16S rRNA gene sequence similarity), Chitinophaga ginsengisegetis Gsoil 040 T (96.1 %), Chitinophaga arvensicola IAM 12650 T (96.1 %) and Chitinophaga pinensis DSM 2588 T (93.3 %). Strain YC6729 T contained MK-7 as the major menaquinone and homospermidine as the major polyamine. The fatty acids of strain YC6729 T were iso-C 15 : 0 , C 16 : 1 ω5 c , iso-C 17 : 0 3-OH, C 16 : 0 , anteiso-C 18 : 0 and/or C 18 : 2 ω6,9 c , iso-C 15 : 0 2-OH and/or C 16 : 1 ω7 c , C 14 : 0 , iso-C 15 : 0 3-OH, iso-C 15 : 1 G, C 18 : 1 ω5 c , iso-C 15 : 1 I and/or C 13 : 0 3-OH, C 13 : 0 2-OH, C 16 : 0 3-OH and unknown fatty acid ECL 13.565. The polar lipid profile contained phosphatidylethanolamine, unknown aminolipids and unknown lipids. The total DNA G+C content of strain YC6729 T was 48.9 mol%. The phenotypic, chemotaxonomic and phylogenetic data showed that strain YC6729 T represents a novel species of the genus Chitinophaga , for which the name Chitinophaga eiseniae sp. nov. is proposed. The type strain is YC6729 T ( = KACC 13774 T  = DSM 22224 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.023028-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2011
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
    Location Call Number Limitation Availability
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  • 3
    Online Resource
    Online Resource
    Nocardioides caricicola sp. nov., an endophytic bacterium isolated from a halophyte, Carex scabrifolia Steud.
    Microbiology Society ; 2011
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 61, No. 1 ( 2011-01-01), p. 105-109
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 61, No. 1 ( 2011-01-01), p. 105-109
    Abstract: A Gram-staining-positive, coccoid to rod-shaped bacterium, designated strain YC6903 T , was isolated from a halophytic plant ( Carex scabrifolia Steud.) collected from sand dunes at Namhae Island, Korea, and its taxonomic position was investigated by using a polyphasic approach. Strain YC6903 T grew optimally at 30 °C and at pH 8.0. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain YC6903 T belongs to the genus Nocardioides in the family Nocardioidaceae . Strain YC6903 T was related most closely to Nocardioides pyridinolyticus OS4 T (97.0 % 16S rRNA gene sequence similarity), Nocardioides dokdonensis FR1436 T (96.6 %), Nocardioides aquiterrae GW-9 T (96.6 %) and Nocardioides hankookensis DS-30 T (96.6 %). The cell-wall peptidoglycan contained ll -diaminopimelic acid and MK-8(H 4 ) was the major respiratory quinone. The mean (± sd ) level of DNA–DNA relatedness between strain YC6903 T and N. pyridinolyticus OS4 T was 53.5±5.5 %. The predominant cellular fatty acid of strain YC6903 T was iso-C 16 : 0 (28.9 %). The DNA G+C content was 71.7 mol%. Phenotypic, phylogenetic and chemotaxonomic data indicated that strain YC6903 T represents a novel species of the genus Nocardioides , for which the name Nocardioides caricicola sp. nov. is proposed. The type strain is YC6903 T (=KACC 13778 T =DSM 22177 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.019919-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2011
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
    Location Call Number Limitation Availability
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  • 4
    Online Resource
    Online Resource
    Nibricoccus aquaticus gen. nov., sp. nov., a new genus of the family Opitutaceae isolated from hyporheic freshwater
    Microbiology Society ; 2019
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 69, No. 2 ( 2019-02-01), p. 552-557
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 69, No. 2 ( 2019-02-01), p. 552-557
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijsem.0.003198
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2019
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
    Location Call Number Limitation Availability
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  • 5
    Online Resource
    Online Resource
    Sphingomonas oryziterrae sp. nov. and Sphingomonas jinjuensis sp. nov. isolated from rhizosphere soil of rice (Oryza sativa L.)
    Microbiology Society ; 2011
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 61, No. 10 ( 2011-10-01), p. 2389-2394
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 61, No. 10 ( 2011-10-01), p. 2389-2394
    Abstract: Two Gram-reaction-negative, yellow–orange-pigmented, rod-shaped bacterial strains, designated YC6722 T and YC6723 T , were isolated from rhizosphere soil samples collected from rice fields in Jinju, Korea. Strains YC6722 T and YC6723 T grew optimally at 25–30 °C and at pH 7.0–8.5. Phylogenetic analyses of 16S rRNA gene sequences showed that strain YC6722 T was most closely related to Sphingomonas jaspsi TDMA-16 T (96.6 % sequence similarity) and strain YC6723 T was related most closely to Sphingomonas aquatilis JSS7 T (96.9 %). The two strains contained ubiquinone-10 (Q-10) as the major respiratory quinone system and sym -homospermidine as the major polyamine. The G+C contents of the genomic DNA of strains YC6722 T and YC6723 T were 63.3 and 61.0 mol%, respectively. The major fatty acid was C 18 : 1 ω7 c . The polar lipids detected in the two strains were phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, sphingoglycolipid, phosphatidyldimethylethanolamine and other unknown lipids. On the basis of their phylogenetic positions, and their biochemical and phenotypic characteristics, strains YC6722 T and YC6723 T represent two novel species of the genus Sphingomonas , for which the names Sphingomonas oryziterrae sp. nov. ( = KCTC 22476 T  = DSM 21455 T ) and Sphingomonas jinjuensis sp. nov. (KCTC 22477 T  = DSM 21457 T ) are proposed.
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.023846-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2011
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
    Location Call Number Limitation Availability
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