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  • 1
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    Castellaniella daejeonensis sp. nov., isolated from soil
    Microbiology Society ; 2010
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 60, No. 9 ( 2010-09-01), p. 2056-2060
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 60, No. 9 ( 2010-09-01), p. 2056-2060
    Abstract: A Gram-negative, non-spore-forming, motile, facultatively anaerobic bacterium, designated strain MJ06 T , was isolated from oil-contaminated soil and was characterized taxonomically by using a polyphasic approach. Strain MJ06 T contained ubiquinone Q-8 as the major respiratory lipoquinone, putrescine as the predominant polyamine and phosphatidylethanolamine, diphosphatidylglycerol and phosphatidylglycerol as major polar lipids. The G+C content of the genomic DNA of strain MJ06 T was 66.2 mol%. The major fatty acids were summed feature 4 (C 16 : 1 ω 7 c and/or iso-C 15 : 0 2-OH; 32.5 %), C 16 : 0 (22.8 %) and summed feature 7 (one or more of C 18 : 1 ω 7 c , C 18 : 1 ω 9 t and C 18 : 1 ω 12 t ; 14.9 %). Comparative 16S rRNA gene sequence analysis showed that strain MJ06 T belonged to the family Alcaligenaceae , class Betaproteobacteria , and joined the evolutionary radiation enclosed by the genus Castellaniella . Levels of 16S rRNA gene sequence similarity between strain MJ06 T and its phylogenetically closest relatives, Castellaniella denitrificans NKNTAU T , Castellaniella defragrans 54Pin T , Castellaniella ginsengisoli DCY36 T and Castellaniella caeni Ho-11 T , were 98.6, 98.3, 97.8 and 97.3 %, respectively. Levels of similarity between strain MJ06 T and the type strains of all other recognized species in the family Alcaligenaceae were below 95.0 %. Strain MJ06 T exhibited relatively low levels of DNA–DNA relatedness with respect to C. defragrans DSM 12141 T (52 %), C. denitrificans DSM 11046 T (31 %), C. ginsengisoli KCTC 22398 T (18 %) and C. caeni KCTC 12197 T (15 %). On the basis of its phenotypic and genotypic properties together with phylogenetic distinctiveness, strain MJ06 T is considered to represent a novel species of the genus Castellaniella , for which the name Castellaniella daejeonensis sp. nov. is proposed. The type strain is MJ06 T (=KCTC 22454 T =JCM 16240 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.018887-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2010
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 2
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    Dyadobacter soli sp. nov., a starch-degrading bacterium isolated from farm soil
    Microbiology Society ; 2010
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 60, No. 11 ( 2010-11-01), p. 2577-2582
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 60, No. 11 ( 2010-11-01), p. 2577-2582
    Abstract: A Gram-negative, non-motile, aerobic bacterial strain, designated MJ20 T , was isolated from farm soil near Daejeon (South Korea) and was characterized taxonomically by using a polyphasic approach. Comparative 16S rRNA gene sequence analysis showed that strain MJ20 T belongs to the family Cytophagaceae , class Sphingobacteria , and was related most closely to Dyadobacter fermentans DSM 18053 T (98.9 % sequence similarity), Dyadobacter beijingensis JCM 14200 T (98.0 %) and Dyadobacter ginsengisoli KCTC 12589 T (96.4 %). The G+C content of the genomic DNA of strain MJ20 T was 48.5 mol%. The detection of MK-7 as the predominant menaquinone and a fatty acid profile with summed feature 4 (C 16 : 1 ω 7 c and/or iso-C 15 : 0 2-OH), iso-C 15 : 0 , C 16 : 0 and C 16 : 1 ω 5 c as major components supported the affiliation of strain MJ20 T to the genus Dyadobacter . The new isolate exhibited relatively low levels of DNA–DNA relatedness with respect to D. fermentans DSM 18053 T (mean± sd of three determinations, 47±7 %) and D. beijingensis JCM 14200 T (38±8 %). On the basis of its phenotypic and genotypic properties together with phylogenetic distinctiveness, strain MJ20 T (=KCTC 22481 T =JCM 16232 T ) should be classified in the genus Dyadobacter as the type strain of a novel species, for which the name Dyadobacter soli sp. nov. is proposed.
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.019653-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2010
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 3
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    Protaetiibacter larvae sp. nov. and Agromyces intestinalis sp. nov., isolated from the gut of larvae of Protaetia brevitarsis seulensis, reclassification of Lysinimonas yzui as Pseudolysinimonas yzui comb. nov. and emended description of the genus Pseudolysinimonas
    Microbiology Society ; 2021
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 71, No. 4 ( 2021-04-29)
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 71, No. 4 ( 2021-04-29)
    Abstract: Two bacterial strains, FWR-8 T and CFWR-9 T , were isolated from the gut of larvae of Protaetia brevitarsis seulensis that were raised at the National Institute of Agricultural Sciences, Wanju-gun, Republic of Korea. Both strains were strictly aerobic, Gram-stain-positive and non-motile. Strain FWR-8 T possessed the highest sequence similarity (98.7 %) to that of Protaetiibacter intestinalis 2DFWR-13 T and the phylogenetic tree revealed that strain FWR-8 T formed a cluster with Ptb. intestinalis 2DFWR-13 T . Pseudolysinimonas kribbensis MSL-13 T and Lysinimonas yzui N7XX-4 T shared a high 16S rRNA gene sequence similarity (97.8 %) and formed a cluster adjacent to the cluster that included Ptb. intestinalis 2DFWR-13 T . The 16S rRNA gene sequence of strain CFWR-9 T exhibited the highest similarity (97.7 %) to that of Agromyces binzhouensis OAct353 T and the phylogenetic tree indicated that strain CFWR-9 T formed one independent cluster with A. binzhouensis OAct353 T that was within the radius of the genus Agromyces . The peptidoglycan type, major fatty acids, major menaquinones and total polar lipids of strain FWR-8 T were characterized as type B1, iso-C 16 : 0 , anteiso-C 15 : 0 and anteiso-C 17 : 0 , MK-15, MK-16 and MK-14, and diphosphatidylglycerol, phosphatidylglycerol, two unidentified glycolipids and one unidentified lipid, respectively. Those from strain CFWR-9 T were type B1, iso-C 16 : 0 , anteiso-C 15 : 0 and anteiso-C 17 : 0 , MK-11, MK-12 and MK-10, and diphosphatidylglycerol, phosphatidylglycerol, two unidentified glycolipids and one unidentified lipid, respectively. Based on the phenotypic and genotypic data, strains FWR-8 T and CFWR-9 T each represent a novel species within the genera Protaetiibacter and Agromyces , respectively. For these species, the names Protaetiibacter larvae sp. nov. and Agromyces intestinalis sp. nov. have been proposed, with the type strains FWR-8 T (=KACC 19322 T =NBRC 113051 T ) and CFWR-9 T (=KACC 19306 T =NBRC 113046 T ), respectively. Our results also justify a reclassification of Lysinimonas yzui as Pseudolysinimonas yzui comb. nov. and an emended description of the genus Pseudolysinimonas isprovided.
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijsem.0.004669
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2021
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
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  • 4
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    Bacillus oryzaecorticis sp. nov., a moderately halophilic bacterium isolated from rice husks
    Microbiology Society ; 2014
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 64, No. Pt_8 ( 2014-08-01), p. 2786-2791
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 64, No. Pt_8 ( 2014-08-01), p. 2786-2791
    Abstract: A Gram-stain-positive, aerobic, endospore-forming, moderately halophilic rod, designated strain R1 T , was isolated from rice husks and subjected to a taxonomic study using a polyphasic approach. Strain R1 T produced spherical or ellipsoidal endospores at a subterminal position in swollen sporangia, and was catalase- and oxidase-positive. The isolate grew optimally at 37 °C and pH 6.0–7.0, and could grow in the presence of up to 9 % (w/v) NaCl. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain R1 T belongs to the genus Bacillus . The closest relatives of strain R1 T were Bacillus subtilis subsp . subtilis NCIB 3610 T , Bacillus aquimaris TF-12 T , and Bacillus marisflavi TF-11 T , with 16S rRNA gene sequence similarities of 96.0 %, 98.4 %, and 98.7 %, respectively. DNA–DNA relatedness values between the isolate and the reference strains were ≤42±3 %. The predominant menaquinones were MK-5 (50 %) and MK-7 (50 %). The major polar lipids were phosphatidylglycerol, diphosphatidylglycerol, and phosphatidylethanolamine. The major cellular fatty acids were iso-C 15 : 0 (48.6 %) and anteiso-C 15 : 0 (20.6 %), and the cell-wall diamino acid was meso -diaminopimelic acid. On the basis of 16S rRNA gene sequence analyses and chemotaxonomic and phenotypic characteristics, it is concluded that strain R1 T represents a novel species of the genus Bacillus , for which we propose the name Bacillus oryzaecorticis sp. nov. The type strain is R1 T ( = KACC 17217 T  = KCCM 90231 T  = JCM 19602 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.058768-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2014
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
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  • 5
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    Parapedobacter lycopersici sp. nov., isolated from the rhizosphere soil of tomato plants (Solanum lycopersicum L.)
    Microbiology Society ; 2017
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 67, No. 10 ( 2017-10-01), p. 3728-3732
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 67, No. 10 ( 2017-10-01), p. 3728-3732
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijsem.0.002162
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2017
    detail.hit.zdb_id: 215062-1
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  • 6
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    Cohnella herbarum sp. nov., isolated from wild grass fermentation broth
    Microbiology Society ; 2022
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 72, No. 8 ( 2022-08-12)
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 72, No. 8 ( 2022-08-12)
    Abstract: A novel strictly aerobic, Gram-stain-positive, rod-shaped, motile, endospore-forming, white-coloured bacterium, designated strain MFER-1 T , was isolated from a fermented liquor of wild grasses sampled in the Republic of Korea. The respiratory quinone of strain MFER-1 T was menaquinone-7 and its major cellular fatty acids were anteiso-C 15 : 0 (55.3 %), iso-C 16 : 0 (17.5 %) and C 16 : 0 (12.1 %). The polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, four unidentified aminophospholipids and an unidentified phospholipid. The 16S rRNA gene sequence of strain MFER-1 T showed similarity of 98.1 % to ‘ Cohnella cholangitidis ’ 1 605-214 T and below 98.0 % sequence similarity to the other Cohnella species. The phylogenomic tree indicated that strain MFER-1 T formed a reliable cluster with several Cohnella species. The estimated genome size of strain MFER-1 T was 8.52 Mb. Genomic DNA G+C content was 50.7mol%. The orthologous average nucleotide identity, digital DNA–DNA hybridization and amino acid identity values of strain MFER-1 T with the most closely related species ‘ Cohnella cholangitidis ’ 1 605-214 T were 78.7, 23.0 and 79.6 %, respectively. Based on the phenotypic, chemotaxonomic and phylogenetic results, strain MFER-1 T should represent a novel species of the genus Cohnella , for which the name Cohnella herbarum sp. nov. is proposed, with strain MFER-1 T (=KACC 21 257 T =NBRC 114 628 T ) as the type strain.
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijsem.0.005485
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2022
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
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  • 7
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    Arthrobacter silviterrae sp. nov., isolated from forest soil
    Microbiology Society ; 2017
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 67, No. 11 ( 2017-11-01), p. 4546-4551
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 67, No. 11 ( 2017-11-01), p. 4546-4551
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijsem.0.002329
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2017
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
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  • 8
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    Arachidicoccus soli sp. nov., a bacterium isolated from soil
    Microbiology Society ; 2021
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 71, No. 1 ( 2021-01-01)
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 71, No. 1 ( 2021-01-01)
    Abstract: A Gram-stain-negative, aerobic, non-motile and rod-shaped bacterium, designated KIS59-12 T , was isolated from a soil sample collected on Hodo island, Boryeong, Republic of Korea. The strain grew at 10–33 °C, pH 6.0–7.5 and with 0–4 % NaCl (w/v). Results of phylogenetic analysis based on 16S rRNA gene sequences showed that strain KIS59-12 T was in the same clade as Arachidicoccus rhizosphaerae Vu-144 T and Arachidicoccus ginsenosidivorans Gsoil809 T with 97.5 and 97.2 % sequence similarity, respectively. Comparative genome analysis between strain KIS59-12 T and A. rhizosphaerae Vu-144 T showed that average nucleotide identity value was 69.4 % and the digital DNA–DNA hybridization value was 19.1 %. The major respiratory quinone was menaquinone-7. The major polar lipids were phosphatidylethanolamine and an unknown polar lipid. The predominant cellular fatty acids were iso-C 15 : 0 , iso-C 15 : 1 G and iso-C 17 : 0 3-OH, which supported the affiliation of strain KIS59-12 T with the genus Arachidicoccus . The major polyamines were homospermidine and putrescine. The genomic DNA G+C content was 36.4 mol%. On the basis of phylogenetic, physiological and chemotaxonomic characteristics, strain KIS59-12 T represents a novel species of the genus Arachidicoccus , for which the name Arachidicoccus soli sp. nov. is proposed. The type strain of Arachidicoccus soli is KIS59-12 T (=KACC 17340 T =NBRC 113161 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijsem.0.004566
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2021
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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