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  • 1
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    Ureibacillus suwonensis sp. nov., isolated from cotton waste composts
    Microbiology Society ; 2006
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 56, No. 3 ( 2006-03-01), p. 663-666
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 56, No. 3 ( 2006-03-01), p. 663-666
    Abstract: The taxonomic position of two spore-forming strains 6T19 T and 6T29, isolated from cotton composts for the cultivation of oyster mushroom ( Pleurotus ostreatus ), was investigated by a polyphasic approach. Cells of strains 6T19 T and 6T29 were rod-shaped, Gram-negative and strictly aerobic. Sequencing and comparative analyses for the 16S rRNA genes of these strains clearly showed their phylogenetic affiliation to the genus Ureibacillus . Their closest relatives Ureibacillus thermosphaericus and Ureibacillus terrenus have sequence similarity of 96·9 and 97·5 %, respectively. The isoprenoid quinones of isolate 6T19 T were MK-9, MK-8, MK-7, MK-10 and MK-6 (45 : 27 : 18 : 5 : 4 %), the peptidoglycan type was l -lys← d -Asp and the main cellular fatty acid was i-C 16 : 0 . DNA–DNA hybridization experiments resulted in relatedness values of 37 % between 6T19 T and U. thermosphaericus DSM 10633 T and 41 % between 6T19 T and U. terrenus DSM 12654 T . Based on the polyphasic data, strains 6T19 T and 6T29 can be described as members of a novel species of the genus Ureibacillu s, for which the name Ureibacillus suwonenesis sp. nov. is proposed. The type strain is 6T19 T (=KACC 11287 T =DSM 16752 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.63703-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2006
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
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  • 2
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    Leadbetterella byssophila gen. nov., sp. nov., isolated from cotton-waste composts for the cultivation of oyster mushroom
    Microbiology Society ; 2005
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 55, No. 6 ( 2005-11-01), p. 2297-2302
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 55, No. 6 ( 2005-11-01), p. 2297-2302
    Abstract: A bacterial strain, designated 4M15 T , was isolated from cotton-waste composts used as mushroom cultivation in South Korea. Properties of this isolate were studied on the basis of physiological and biochemical characteristics, fatty acid profile, isoprenoid quinone, DNA G+C content and phylogenetic position based on 16S rRNA gene sequence analysis. The strain was found to form a distinct phylogenetic lineage related to the family ‘ Flexibacteraceae ’ within the phylum ‘ Bacteroidetes ’. No recognized species showed 〉 85 % 16S rRNA gene sequence similarity to strain 4M15 T . The fatty acid profile of strain 4M15 T included C 16 : 1 ω 7 c /iso-C 15 : 0 2-OH (30·5 %), iso-C 15 : 0 (24·2 %), iso-C 15 : 0 2-OH/C 16 : 1 ω 7 c (15·9), iso-C 17 : 0 3-OH (10·5 %) and C 16 : 0 (5·6 %). The major isoprenoid quinone was menaquinone MK-7. The DNA G+C content was 33·0 mol%. Cells were Gram-negative, strictly aerobic, rod-shaped, non-motile, catalase-positive, oxidase-positive and flexirubin-positive. The strain hydrolysed aesculin, gelatin, starch and tyrosine. Several phenotypic tests could be used to differentiate strain 4M15 T from other members of the family ‘ Flexibacteraceae ’. On the basis of the data presented, strain 4M15 T should be assigned to the phylum ‘ Bacteroidetes ’ as a novel genus and species, for which the name Leadbetterella byssophila gen. nov., sp. nov. is proposed. The type strain is 4M15 T (=KACC 11308 T =DSM 17132 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.63741-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2005
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
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  • 3
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    Flavobacterium daejeonense sp. nov. and Flavobacterium suncheonense sp. nov., isolated from greenhouse soils in Korea
    Microbiology Society ; 2006
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 56, No. 7 ( 2006-07-01), p. 1645-1649
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 56, No. 7 ( 2006-07-01), p. 1645-1649
    Abstract: Two yellow-pigmented, Gram-negative, rod-shaped bacterial strains, GH1-10 T and GH29-5 T , were isolated from greenhouse soils in Korea. 16S rRNA gene sequence analysis indicated that these strains were related to members of the genus Flavobacterium . Strain GH1-10 T was most closely related to Flavobacterium psychrolimnae and Flavobacterium denitrificans , with sequence similarities of 95.9 and 95.2 %, respectively. Strain GH29-5 T was most closely related to ‘ Flavobacterium saliodium ’, F. denitrificans and Flavobacterium frigoris , with sequence similarities of 94.3, 92.5 and 92.5 %, respectively. The major cellular fatty acids of GH1-10 T were iso-C 15 : 0 , summed feature 3 (iso-C 15 : 0 2-OH and/or C 16 : 1 ω 7 c ) and iso-C 17 : 0 3-OH, and those of GH29-5 T were iso-C 15 : 0 , iso-C 17 : 0 3-OH, iso-C 15 : 1 G and iso-C 15 : 0 3-OH. Both strains contained menaquinone with six isoprene units (MK-6) as the sole quinone. The DNA G+C contents of GH1-10 T and GH29-5 T were 35 and 39 mol%, respectively. Based on the phylogenetic and phenotypic data presented, it is concluded that the two bacteria represent two separate novel species of the genus Flavobacterium . The names proposed to accommodate these organisms are Flavobacterium daejeonense sp. nov., with type strain GH1-10 T (=KACC 11422 T =DSM 17708 T ), and Flavobacterium suncheonense sp. nov., with type strain GH29-5 T (=KACC 11423 T =DSM 17707 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.64243-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2006
    detail.hit.zdb_id: 215062-1
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  • 4
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    Paracoccus homiensis sp. nov., isolated from a sea-sand sample
    Microbiology Society ; 2006
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 56, No. 10 ( 2006-10-01), p. 2387-2390
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 56, No. 10 ( 2006-10-01), p. 2387-2390
    Abstract: Strain DD-R11 T , isolated from a sea-sand sample from Homi Cape, Pohang city, South Korea, was a Gram-negative, aerobic, motile, non-spore-forming, rod- to ovoid-shaped bacterium. Colonies grown on marine agar were circular, convex and colourless to creamy white. Growth occurred between 10 and 40 °C (optimum 25–30 °C) and at pH 5.0–9.0 (optimum pH 6.0–8.0). The strain could grow in up to 15 % NaCl (optimum 3–5 % NaCl). According to 16S rRNA gene sequence analysis, the strain was a member of the genus Paracoccus in the Alphaproteobacteria . Sequence similarities to type strains of the genus Paracoccus were between 94.6 and 98.3 %, showing the highest sequence similarity to Paracoccus zeaxanthinifaciens ATCC 21588 T . The DNA–DNA relatedness value of strain DD-R11 T and P. zeaxanthinifaciens ATCC 21588 T was 27 %. Strain DD-R11 T was characterized by having ubiquinone 10 as the major respiratory quinone and C 18 : 1 ω 7 c as the predominant fatty acid. The DNA G+C content was 63.0 mol%. On the basis of its phenotypic and genotypic characteristics, it is suggested that DD-R11 T represents a novel species of the genus Paracoccus , for which the name Paracoccus homiensis sp. nov. is proposed, with DD-R11 T (=KACC 11518 T =DSM 17862 T ) as the type strain.
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.64275-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2006
    detail.hit.zdb_id: 215062-1
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  • 5
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    Methylobacterium oryzae sp. nov., an aerobic, pink-pigmented, facultatively methylotrophic, 1-aminocyclopropane-1-carboxylate deaminase-producing bacterium isolated from rice
    Microbiology Society ; 2007
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 57, No. 2 ( 2007-02-01), p. 326-331
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 57, No. 2 ( 2007-02-01), p. 326-331
    Abstract: A pink-pigmented, facultatively methylotrophic bacterium, strain CBMB20 T , isolated from stem tissues of rice, was analysed by a polyphasic approach. Strain CBMB20 T utilized 1-aminocyclopropane 1-carboxylate (ACC) as a nitrogen source and produced ACC deaminase. It was related phylogenetically to members of the genus Methylobacterium . 16S rRNA gene sequence analysis indicated that strain CBMB20 T was most closely related to Methylobacterium fujisawaense , Methylobacterium radiotolerans and Methylobacterium mesophilicum ; however, DNA–DNA hybridization values were less than 70 % with the type strains of these species. The DNA G+C content of strain CBMB20 T was 70.6 mol%. The study presents a detailed phenotypic characterization of strain CBMB20 T that allows its differentiation from other Methylobacterium species. In addition, strain CBMB20 T is the only known member of the genus Methylobacterium to be described from the phyllosphere of rice. Based on the data presented, strain CBMB20 T represents a novel species in the genus Methylobacterium , for which the name Methylobacterium oryzae sp. nov. is proposed, with strain CBMB20 T (=DSM 18207 T =LMG 23582 T =KACC 11585 T ) as the type strain.
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.64603-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2007
    detail.hit.zdb_id: 215062-1
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  • 6
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    Chryseobacterium wanjuense sp. nov., isolated from greenhouse soil in Korea
    Microbiology Society ; 2006
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 56, No. 7 ( 2006-07-01), p. 1501-1504
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 56, No. 7 ( 2006-07-01), p. 1501-1504
    Abstract: A taxonomic study was performed on strain R2A10-2 T , isolated from greenhouse soil cultivated with lettuce ( Lactuca sativa L.), collected in Wanju Province, Korea. The bacterial cells were Gram-negative, aerobic, short rods. The growth temperature and pH were 5–35 °C and 5.0–9.0, respectively. Phylogenetic analysis based on 16S rRNA gene sequences revealed that this isolate had 93.3–97.7 % similarity to Chryseobacterium species: the highest sequence similarities were to the type strains of Chryseobacterium daecheongense (97.7 %), Chryseobacterium formosense (97.1 %) and Chryseobacterium defluvii (96.9 %). Low levels of DNA–DNA relatedness were found between strain R2A10-2 T and the type strains of these three species ( 〈 28 %). Differences in phenotypic properties were found with respect to Chryseobacterium species with validly published names. The predominant cellular fatty acids were iso-15 : 0 (40.0 %), iso-17 : 0 3-OH (21.9 %), iso-17 : 1ω9 c (11.7 %) and summed feature 4 (iso-15 : 0 2-OH and/or 16 : 1ω7 c / t , 11.0 %). Menaquinone MK-6 was detected as the sole respiratory quinone. The G+C content of the genomic DNA was 37.8 mol%. On the basis of the genomic and phenotypic evidence, this isolate represents a novel species of the genus Chryseobacterium , for which the name Chryseobacterium wanjuense sp. nov. is proposed. The type strain is R2A10-2 T (=KACC 11468 T =DSM 17724 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.64179-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2006
    detail.hit.zdb_id: 215062-1
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  • 7
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    Lysobacter niabensis sp. nov. and Lysobacter niastensis sp. nov., isolated from greenhouse soils in Korea
    Microbiology Society ; 2007
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 57, No. 3 ( 2007-03-01), p. 548-551
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 57, No. 3 ( 2007-03-01), p. 548-551
    Abstract: Two bacterial strains, designated GH34-4 T and GH41-7 T , were isolated from greenhouse soil cultivated with cucumber. The bacteria were strictly aerobic, Gram-negative, rod-shaped and oxidase- and catalase-positive. 16S rRNA gene sequence analysis indicated that these strains belong to the genus Lysobacter within the Gammaproteobacteria . Strain GH34-4 T showed highest sequence similarity to Lysobacter yangpyeongensis GH19-3 T (97.5 %) and Lysobacter koreensis Dae16 T (96.4 %), and strain GH41-7 T showed highest sequence similarity to Lysobacter antibioticus DSM 2044 T (97.5 %), Lysobacter enzymogenes DSM 2043 T (97.5 %) and Lysobacter gummosus ATCC 29489 T (97.4 %). Levels of DNA–DNA relatedness indicated that strains GH34-4 T and GH41-7 T represented species clearly different from L. yangpyeongensis , L. antibioticus , L. enzymogenes and L. gummosus . The major cellular fatty acids of strains GH34-4 T and GH41-7 T were iso-C 16 : 0 , iso-C 15 : 0 and iso-C 17 : 1 ω 9 c , and the major isoprenoid quinone was Q-8. The DNA G+C contents of GH34-4 T and GH41-7 T were 62.5 and 66.6 mol%, respectively. On the basis of the polyphasic taxonomic data presented, it is evident that each of these strains represents a novel species of the genus Lysobacter , for which the names Lysobacter niabensis sp. nov. (type strain GH34-4 T =KACC 11587 T =DSM 18244 T ) and Lysobacter niastensis sp. nov. (type strain GH41-7 T =KACC 11588 T =DSM 18481 T ) are proposed.
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.64473-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2007
    detail.hit.zdb_id: 215062-1
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  • 8
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    Sphingobacterium composti sp. nov., isolated from cotton-waste composts
    Microbiology Society ; 2007
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 57, No. 7 ( 2007-07-01), p. 1590-1593
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 57, No. 7 ( 2007-07-01), p. 1590-1593
    Abstract: A Gram-negative, strictly aerobic, short rod-shaped, non-motile bacterial strain designated 4M24 T was isolated from cotton-waste compost. Analysis of the 16S rRNA gene sequence of strain 4M24 T revealed that it is a member of the genus Sphingobacterium , sharing 88.5–94.5 % sequence similarity with type strains of the genus Sphingobacterium and being most closely related to Sphingobacterium daejeonense TR6-04 T (94.5 % sequence similarity) and Sphingobacterium mizutaii ATCC 33299 T (92.2 % similarity). The major fatty acids of strain 4M24 T grown on trypticase soy agar medium were summed feature 3 (iso-C 15 : 0 2-OH and/or C 16 : 1 ω 7 c ; 37.5 %), iso-C 15 : 0 (29.5 %) and iso-C 17 : 0 3-OH (19.7 %). The G+C content of the genomic DNA was 42.3 mol%. On the basis of phenotypic and genotypic characteristics, strain 4M24 T represents a novel species of the genus Sphingobacterium , for which the name Sphingobacterium composti sp. nov. is proposed. The type strain is 4M24 T (=KACC 11313 T =DSM 18850 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.64948-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2007
    detail.hit.zdb_id: 215062-1
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  • 9
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    Bacillus niabensis sp. nov., isolated from cotton-waste composts for mushroom cultivation
    Microbiology Society ; 2007
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 57, No. 8 ( 2007-08-01), p. 1909-1913
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 57, No. 8 ( 2007-08-01), p. 1909-1913
    Abstract: A group of five bacilli, designated strains 4T12, 4T19 T , 5M45, 5M53 and 5T52, isolated from cotton-waste composts for mushroom cultivation, were examined. These strains were Gram-positive, aerobic, motile, spore-forming rods. 16S rRNA gene sequence analyses revealed that the isolates belonged to the genus Bacillus , showing the highest levels of similarity (approx. 96.6–96.9 %) with respect to Bacillus herbersteinensis DSM 16534 T . The values for DNA–DNA hybridization (approx. 85–96 %) among these five strains revealed that they belong to the same species. The major menaquinone present was MK-7 and the predominant cellular fatty acids were anteiso-C 15 : 0 (approx. 24.5–33.9 %) and C 16 : 0 (approx. 15.1–34.1 %). The DNA G+C contents were 37.7–40.9 mol%. On the basis of physiological, biochemical, chemotaxonomic and comparative genomic analyses, the five isolates represent a novel species of the genus Bacillus , for which the name Bacillus niabensis sp. nov. is proposed. The type strain is 4T19 T (=KACC 11279 T =DSM 17723 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.64178-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2007
    detail.hit.zdb_id: 215062-1
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  • 10
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    Niastella koreensis gen. nov., sp. nov. and Niastella yeongjuensis sp. nov., novel members of the phylum Bacteroidetes, isolated from soil cultivated with Korean ginseng
    Microbiology Society ; 2006
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 56, No. 8 ( 2006-08-01), p. 1777-1782
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 56, No. 8 ( 2006-08-01), p. 1777-1782
    Abstract: Two novel strains, GR20-10 T and GR20-13 T , were isolated from soil using R2A medium. The soil sample was collected from a field in the Yeongju region of Korea that was cultivated with Korean ginseng. Phylogenetic analysis based on 16S rRNA gene sequences indicated that these strains formed a cluster with several uncultured bacterial clones and with Flexibacter filiformis , Flexibacter sancti , Flexibacter japonensis , Cytophaga arvensicola and Flavobacterium ferrugineum (recently reclassified as Terrimonas ferruginea ) in the phylum Bacteroidetes . The level of 16S rRNA gene sequence similarity between the two novel strains was 98.9 %. Isolates GR20-10 T and GR20-13 T showed the highest sequence similarities to Flexibacter japonensis IFO 16041 T (91.8 and 91.9 %, respectively) and T. ferruginea ATCC 13524 T (90.4 and 90.6 %, respectively). The whole-cell fatty acid profiles of the two isolates were similar and their major fatty acids were 15 : 0 iso, 17 : 0 iso 3-OH and 15 : 1 iso G. The major isoprenoid quinone of both strains was MK-7. The G+C contents of GR20-10 T and GR20-13 T were 45.8 and 44.3 mol%, respectively. DNA–DNA hybridization (57 % DNA–DNA hybridization value) and phenotypic data indicated that strains GR20-10 T and GR20-13 T each belong to a separate species. On the basis of phenotypic and phylogenetic data and genomic distinctiveness, strains GR20-10 T and GR20-13 T represent two novel species in a novel genus in the phylum Bacteroidetes ; the names Niastella koreensis gen. nov., sp. nov. (the type species; type strain GR20-10 T =KACC 11465 T =DSM 17620 T ) and Niastella yeongjuensis sp. nov. (type strain GR20-13 T =KACC 11466 T =DSM 17621 T ) are proposed.
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.64242-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2006
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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