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  • 1
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    GEOMAR
    Publication Date: 2022-09-07
    Description: Fahrtabschnitt 14.05. - 22.05.2022
    Type: Report , NonPeerReviewed
    Format: text
    Location Call Number Limitation Availability
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  • 2
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    GEOMAR
    In:  GEOMAR, Kiel, Germany, 4 pp.
    Publication Date: 2021-01-29
    Description: Physical, chemical, biological oceanography and fisheries research This multidisciplinary cruise extended a long-term data series on (eco-)system composition and functioning of the Baltic Sea, with a focus on the deeper basins. The series has been collected in similar form since 1986. A key characteristic of the cruise is the integration of oceanographic and biological information to enhance understanding of environmental and (fish) population fluctuations, and evolutionary processes in this system. The resulting datasets and samples feed into the EU projects BONUS BLUEWEBS and Horizon 2020 GoJelly, and the US NSF project "Evolutionary Responses to Global Change in Salinity and Temperature". The spatial focus lay on the Bornholm Basin as most important spawning area of Baltic cod, but also included the Western Baltic Sea, Arkona and Gotland Basin, Gdansk Deep, and Stolpe Trench. Specific investigations included a detailed hydrological survey (oxygen, salinity, temperature) of the Bornholm Basin, plankton surveys (zoo- and ichthyplankton, with the goal to determine the composition and the abundance and vertical and horizontal distribution of species, and to take samples for later measurements of nutritional condition), and pelagic fishery hauls for clupeid and gadoid fish. The latter served to determine stock structure, gonadal maturation, stomach contents, and egg production of sprat and cod, and to sample tissue and otolith samples for individual-level genetic and ecological analyses of cod. The abundance and distribution of fishes in the cruise area was also assessed with hydroacoustic methods. Additional cruise components were: (i) cod gonad sampling for fecundity studies and liver sampling for parasite studies. (ii) vertically resolved phytoplankton and zooplankton sampling for studies of plankton phenology. (iii) in-depth sampling of planktonic food webs for dietary tracer work. (iv) copepode Eurytemora affinis sampling along the salinity gradient of the Baltic Sea for the study of local adapations.
    Type: Report , NonPeerReviewed , info:eu-repo/semantics/book
    Format: text
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    Format: other
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  • 3
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    GEOMAR
    In:  Alkor-Berichte, AL509 . GEOMAR, Kiel, Germany, 11 pp.
    Publication Date: 2021-01-28
    Description: Dates of Cruise: 15.05. – 30.05.2018 Areas of Research: Physical, chemical, biological and fishery oceanography Port Calls: Riga. Latvia, 22.05.2018
    Type: Report , NonPeerReviewed , info:eu-repo/semantics/book
    Format: text
    Format: other
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  • 4
    Publication Date: 2019-04-11
    Description: Laufzeit des Vorhabens: 01.01.2014-31.12.2017 : Berichtszeitraum: 01.01.2014-31.12.2017
    Type: Report , NonPeerReviewed
    Format: text
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  • 5
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    GEOMAR
    In:  [Poster] In: ICES Symposium: Challenging the scientific legacy of Johan Hjort: time for a new paradigm in marine research?, 12.-14.06.2019, Bergen, Norway .
    Publication Date: 2019-12-13
    Type: Conference or Workshop Item , NonPeerReviewed
    Format: text
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  • 6
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    GEOMAR
    Publication Date: 2023-09-19
    Description: 15.05 – 30.05.2019 The AL522 cruise extended a long-term data series on (eco-)system composition and functioning of the Baltic Sea, with a focus on the deeper basins. The series has been collected in similar form since 1986. A key characteristic of the cruise is the integration of oceanographic and biological information to enhance understanding of environmental and (fish) population fluctuations, and evolutionary processes in this system. The resulting data- and sample sets support ongoing projects in the Research Unit Marine Evolutionary Ecology at GEOMAR, as well as the EU Horizon 2020 project GoJelly and several international collaborations. The spatial focus lay on the Bornholm Basin as most important spawning area of Baltic cod, but also included the Western Baltic Sea, Arkona and Gotland Basin, Gdansk Deep, and Stolpe Trench. Specific investigations included a detailed hydrological survey (oxygen, salinity, temperature) of the cruise area, plankton surveys (zoo- and ichthyplankton including gelatinous plankton, with the goal to determine the composition and the abundance and vertical and horizontal distribution of species, and to take samples for later measurements of nutritional condition), and pelagic fishery hauls. The latter served to determine stock structure, gonadal maturation, stomach contents, and egg production of sprat and cod, and to sample tissue and otolith samples for individual-level genetic and ecological analyses of cod. The abundance and distribution of fishes in the cruise area was also assessed with hydroacoustic methods. Additional cruise components were: (i) cod gonad and liver sampling for fecundity + parasite studies, (ii) vertically resolved plankton sampling for studies of plankton phenology (iii) depth-resolved sampling of microplastic using an neuston sledge (iv) sampling and experimental work of photosynthesis rates of different phytoplankton fractions (v) eDNA filter sampling to compare with traditional net based methods.
    Type: Report , NonPeerReviewed
    Format: text
    Format: image
    Format: other
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  • 7
    Publication Date: 2022-01-31
    Description: Repeated and independent emergence of trait divergence that matches habitat differences is a sign of parallel evolution by natural selection. Yet, the molecular underpinnings that are targeted by adaptive evolution often remain elusive. We investigate this question by combining genome-wide analyses of copy number variants (CNVs), single nucleotide polymorphisms (SNPs), and gene expression across four pairs of lake and river populations of the three-spined stickleback (Gasterosteus aculeatus). We tested whether CNVs that span entire genes and SNPs occurring in putative cis-regulatory regions contribute to gene expression differences between sticklebacks from lake and river origins. We found 135 gene CNVs that showed a significant positive association between gene copy number and gene expression, suggesting that CNVs result in dosage effects that can fuel phenotypic variation and serve as substrates for habitat-specific selection. Copy number differentiation between lake and river sticklebacks also contributed to expression differences of two immune-related genes in immune tissues, cathepsin A and GIMAP7. In addition, we identified SNPs in cis-regulatory regions (eSNPs) associated with the expression of 1,865 genes, including one eSNP upstream of a carboxypeptidase gene where both the SNP alleles differentiated and the gene was differentially expressed between lake and river populations. Our study highlights two types of mutations as important sources of genetic variation involved in the evolution of gene expression and in potentially facilitating repeated adaptation to novel environments.
    Type: Article , PeerReviewed
    Format: text
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  • 8
    Publication Date: 2024-02-07
    Description: Mitochondrial genomes (mitogenomes) of flowering plants are composed of multiple chromosomes. Recombination within and between the mitochondrial chromosomes may generate diverse DNA molecules termed isoforms. The isoform copy number and composition can be dynamic within and among individual plants due to uneven replication and homologous recombination. Nonetheless, despite their functional importance, the level of mitogenome conservation within species remains understudied. Whether the ontogenetic variation translates to evolution of mitogenome composition over generations is currently unknown. Here we show that the mitogenome composition of the seagrass Zostera marina is conserved among worldwide populations that diverged ca. 350,000 years ago. Using long-read sequencing, we characterized the Z. marina mitochondrial genome and inferred the repertoire of recombination-induced configurations. To characterize the mitochondrial genome architecture worldwide and study its evolution, we examined the mitogenome in Z. marina meristematic region sampled in 16 populations from the Pacific and Atlantic oceans. Our results reveal a striking similarity in the isoform relative copy number, indicating a high conservation of the mitogenome composition among distantly related populations and within the plant germline, despite a notable variability during individual ontogenesis. Our study supplies a link between observations of dynamic mitogenomes at the level of plant individuals and long-term mitochondrial evolution.
    Type: Article , PeerReviewed
    Format: text
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