In:
Frontiers in Genetics, Frontiers Media SA, Vol. 15 ( 2024-6-12)
Abstract:
Circular RNAs (circRNAs) play an important role in the occurrence and development of diseases. However, the role of circRNAs in male smokers with chronic obstructive pulmonary disease (COPD) remains unclear. Methods Stable COPD patients and healthy controls were recruited. Peripheral blood mononuclear cells (PBMCs) were extracted. After high-throughput RNA sequencing (RNA-Seq) of PBMCs, a bioinformatics method was used to analyse differentially expressed (DE) circRNAs (DEcircRNAs) and mRNAs (DEmRNAs). Results Total of 114 DEcircRNAs and 58 DEmRNAs were identified. Functional enrichment analysis showed that processes related to COPD include the regulation of interleukin (IL)-18, IL-5 and the NLRP3 inflammasome; differentiation of T helper type 1 (Th1), Th2, and Th17 cells, and the AMPK, Wnt, JAK-STAT, and PI3K-Akt signalling pathways. In the protein–protein interaction (PPI) network, the core genes were MYO16, MYL4, SCN4A, NRCAM, HMCN1, MYOM2, and IQSEC3. Small-molecule prediction results revealed potential drugs for the COPD treatment. Additionally, the circRNA-miRNA-mRNA competitive endogenous RNA (ceRNA) regulatory network was constructed. Conclusion This study identified a set of dysregulated circRNAs and mRNAs and revealed potentially important genes, pathways, new small-molecule drugs and ceRNA regulatory networks in male smokers with COPD. These circRNAs might be prospective biomarkers or potential molecular targets of the ceRNA mechanism for COPD.
Type of Medium:
Online Resource
ISSN:
1664-8021
DOI:
10.3389/fgene.2024.1376721
DOI:
10.3389/fgene.2024.1376721.s001
DOI:
10.3389/fgene.2024.1376721.s002
DOI:
10.3389/fgene.2024.1376721.s003
DOI:
10.3389/fgene.2024.1376721.s004
DOI:
10.3389/fgene.2024.1376721.s005
DOI:
10.3389/fgene.2024.1376721.s006
DOI:
10.3389/fgene.2024.1376721.s007
DOI:
10.3389/fgene.2024.1376721.s008
DOI:
10.3389/fgene.2024.1376721.s009
DOI:
10.3389/fgene.2024.1376721.s010
DOI:
10.3389/fgene.2024.1376721.s011
DOI:
10.3389/fgene.2024.1376721.s012
DOI:
10.3389/fgene.2024.1376721.s013
Language:
Unknown
Publisher:
Frontiers Media SA
Publication Date:
2024
detail.hit.zdb_id:
2606823-0
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