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  • 1
    Electronic Resource
    Electronic Resource
    Preferential cultivation of type II methanotrophic bacteria from littoral sediments (Lake Constance) (2004)
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology ecology 47 (2004), S. 0 
    Details
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Most widely used medium for cultivation of methanotrophic bacteria from various environments is that proposed in 1970 by Whittenbury. In order to adapt and optimize medium for culturing of methanotrophs from freshwater sediment, media with varying concentrations of substrates, phosphate, nitrate, and other mineral salts were used to enumerate methanotrophs by the most probable number method. High concentrations (〉1 mM) of magnesium and sulfate, and high concentrations of nitrate (〉500 μM) significantly reduced the number of cultured methanotrophs, whereas phosphate in the range of 15–1500 μM had no influence. Also oxygen and carbon dioxide influenced the culturing efficiency, with an optimal mixing ratio of 17% O2 and 3% CO2; the mixing ratio of methane (6–32%) had no effect. A clone library of pmoA genes amplified by PCR from DNA extracted from sediment revealed the presence of both type I and type II methanotrophs. Nonetheless, the cultivation of methanotrophs, also with the improved medium, clearly favored growth of type II methanotrophs of the Methylosinus/Methylocystis group. Although significantly more methanotrophs could be cultured with the modified medium, their diversity did not mirror the diversity of methanotrophs in the sediment sample detected by molecular biology method.
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1016/S0168-6496(03)00260-5
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  • 2
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    Methane Dynamics in a Large River - a Case Study of the Elbe River (2019)
    BIRKHAUSER VERLAG AG
    In:  EPIC3Aquatic Sciences, BIRKHAUSER VERLAG AG, 81(: 12), ISSN: 1015-1621
    Details
    Publication Date: 2019-01-29
    Description: We conducted multiple small (2011–2012) and one large sampling campaign (2013) at selected profiles along the Elbe River. With the data we were able to outline spatial and temporal variability of methane concentration, oxidation and emissions in one of the major rivers of Central Europe. The highest methane concentrations were found in human-altered riverine habitats, i.e., in a harbor (1,888 nmol L−1), in a lock and weirs (1409 ± 1545 nmol L−1), and in general in the whole “impounded” river segment (383 ± 215 nmol L−1). On the other hand, the lowest methane concentrations were found in the “lowland” river segment (86 ± 56 nmol L−1). The methane oxidation rate was more efficient in the “natural” segment (71 ± 113 nmol L−1day−1, which means a turnover time of 49 ± 83 day−1) than in the “lowland” segment (4 ± 3 nmol L−1day−1, which means a turnover time of 39 ± 45 day−1). Methane emissions from the surface water into the atmosphere ranged from 0.4 to 11.9 mg m−2 day−1 (mean 2.1 ± 0.6 mg m−2 day−1) with the highest CH4 emissions at the Meissen harbor (94 kg CH4 year−1). Such human-altered riverine habitats (i.e., harbors and similar) have not been taken into consideration in the CH4 budget before, despite them being part of the river ecosystems, they may be significant CH4 hot-spots. The total CH4 diffusive flux from the whole Elbe was estimated to be approximately 97 t CH4 year−1.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 3
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    Methane distribution and methane oxidation in the water column of the Elbe estuary, Germany (2016)
    BIRKHAUSER VERLAG AG
    In:  EPIC3Aquatic Sciences, BIRKHAUSER VERLAG AG, ISSN: 1015-1621
    Details
    Publication Date: 2016-10-13
    Description: Rivers represent a transition zone between terrestric and aquatic environments, and between methane rich and methane poor environments. The Elbe River is one of the most important rivers draining into the North Sea and, along with the Elbe, a potential importer of high amounts of methane into the water column of the North Sea. Twelve sampling cruises from October 2010 until June 2013 were conducted from Hamburg towards the mouth of the Elbe at Cuxhaven. The dynamic of methane concentration in the water column and its consumption via methane oxidation was measured. In addition, physico-chemical parameters were used to estimate their influence on the methanotrophic activity. We observed high methane concentrations at the stations in the area of Hamburg harbor (“inner estuary”) and about 10 times lower concentrations in the outer estuary (median of 416 versus 40 nmol/L, respectively). The methane oxidation (MOX) rate mirrored the methane distribution with high values in the inner estuary and low values in the outer estuary (median of 161 versus 10 nmol/L/d, respectively). Methane concentrations were significantly influenced by the river hydrology (falling water level) and the trophic state of the water (biological oxygen demand). In contrast to other studies no clear relation to the amount of suspended particulate matter (SPM) was found. Methane oxidation rates were significantly influenced by methane concentration and to a lesser extent by temperature. Methane oxidation accounted for 41 ± 12% of the total loss of methane in the summer/fall, but for only 5 ± 3% of the total loss in the winter/spring. We applied a modified box model taking into account the residence times of each water parcel depending on discharge and tidal impact. We observed almost stable methane concentrations in the outer estuary, despite a strong loss of methane through diffusion and oxidation. Thus, we postulate that the water column undergoes a balancing out in the outer Elbe estuary due to a strong additional input of methane, which could be provided by the extensive salt marshes near the river mouth.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 4
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    Methylomonas albis sp. nov. and Methylomonas fluvii sp. nov.: Two cold-adapted methanotrophs from the river Elbe and emended description of the species Methylovulum psychrotolerans (2021)
    ELSEVIER GMBH
    In:  EPIC3Systematic and Applied Microbiology, ELSEVIER GMBH, 44(6), pp. 126248, ISSN: 0723-2020
    Details
    Publication Date: 2022-03-11
    Description: Three strains of methanotrophic bacteria (EbAT, EbBT and Eb1) were isolated from the River Elbe, Germany. These Gram-negative, rod-shaped or coccoid cells contain intracytoplasmic membranes perpendicular to the cell surface. Colonies and liquid cultures appeared bright-pink. The major cellular fatty acids were 12:0 and 14:0, in addition in Eb1 the FA 16:1ω5t was also dominant. Methane and methanol were utilized as sole carbon sources by EbBT and Eb1, while EbAT could not use methanol. All strains oxidize methane using the particulate methane monooxygenase. Both strains contain an additional soluble methane monooxygenase. The strains grew optimally at 15–25 °C and at pH 6 and 8. Based on 16S rRNA gene analysis recovered from the full genome, the phylogenetic position of EbAT is robustly outside any species clade with its closest relatives being Methylomonas sp. MK1 (98.24%) and Methylomonas sp. 11b (98.11%). Its closest type strain is Methylomonas methanica NCIMB11130 (97.91%). The 16S rRNA genes of EbBT are highly similar to Methylomonas methanica strains with Methylomonas methanica R-45371 as the closest relative (99.87% sequence identity). However, average nucleotide identity (ANI) and digital DNA-DNA-hybridization (dDDH) values reveal it as distinct species. The DNA G + C contents were 51.07 mol% and 51.5 mol% for EbAT and EbBT, and 50.7 mol% for Eb1, respectively. Strains EbAT and EbBT are representing two novel species within the genus Methylomonas. For strain EbAT we propose the name Methylomonas albis sp. nov (LMG 29958, JCM 32282) and for EbBT, we propose the name Methylomonas fluvii sp. nov (LMG 29959, JCM 32283). Eco-physiological descriptions for both strains are provided. Strain Eb1 (LMG 30323, JCM 32281) is a member of the species Methylovulum psychrotolerans. This genus is so far only represented by two isolates but Eb1 is the first isolate from a temperate environment; so, an emended description of the species is given.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Format: application/pdf
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