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  • 1
    Online-Ressource
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    American Society for Cell Biology (ASCB) ; 2016
    In:  Molecular Biology of the Cell Vol. 27, No. 22 ( 2016-11-07), p. 3591-3600
    In: Molecular Biology of the Cell, American Society for Cell Biology (ASCB), Vol. 27, No. 22 ( 2016-11-07), p. 3591-3600
    Kurzfassung: Investigation of heterogeneous cellular structures using single-molecule localization microscopy has been limited by poorly defined localization accuracy and inadequate multiplexing capacity. Using fluorescent nanodiamonds as fiducial markers, we define and achieve localization precision required for single-molecule accuracy in dSTORM images. Coupled with this advance, our new multiplexing strategy, madSTORM, allows accurate targeting of multiple molecules using sequential binding and elution of fluorescent antibodies. madSTORM is used on an activated T-cell to localize 25 epitopes, 14 of which are on components of the same multimolecular T-cell receptor complex. We obtain an average localization precision of 2.6 nm, alignment error of 2.0 nm, and 〈 0.01% cross-talk. Combining these technical advances affords the ability to move beyond obtaining superresolved structures to defining spatial relationships among constituent molecules within structures. Probing the molecular topology of complex signaling cascades and other heterogeneous networks is feasible with madSTORM.
    Materialart: Online-Ressource
    ISSN: 1059-1524 , 1939-4586
    Sprache: Englisch
    Verlag: American Society for Cell Biology (ASCB)
    Publikationsdatum: 2016
    ZDB Id: 1474922-1
    SSG: 12
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 2
    Online-Ressource
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    American Society for Cell Biology (ASCB) ; 2016
    In:  Molecular Biology of the Cell Vol. 27, No. 22 ( 2016-11-07), p. 3645-3658
    In: Molecular Biology of the Cell, American Society for Cell Biology (ASCB), Vol. 27, No. 22 ( 2016-11-07), p. 3645-3658
    Kurzfassung: The allergic response is initiated on the plasma membrane of mast cells by phosphorylation of the receptor for immunoglobulin E (IgE), FcεRI, by Lyn kinase after IgE-FcεRI complexes are cross-linked by multivalent antigen. Signal transduction requires reorganization of receptors and membrane signaling proteins, but this spatial regulation is not well defined. We used fluorescence localization microscopy (FLM) and pair-correlation analysis to measure the codistribution of IgE-FcεRI and Lyn on the plasma membrane of fixed cells with 20- to 25-nm resolution. We directly visualized Lyn recruitment to IgE-FcεRI within 1 min of antigen stimulation. Parallel FLM experiments captured stimulation-induced FcεRI phosphorylation and colocalization of a saturated lipid-anchor probe derived from Lyn’s membrane anchorage. We used cytochalasin and latrunculin to investigate participation of the actin cytoskeleton in regulating functional interactions of FcεRI. Inhibition of actin polymerization by these agents enhanced colocalization of IgE-FcεRI with Lyn and its saturated lipid anchor at early stimulation times, accompanied by augmented phosphorylation within FcεRI clusters. Ising model simulations provide a simplified model consistent with our results. These findings extend previous evidence that IgE-FcεRI signaling is initiated by colocalization with Lyn in ordered lipid regions and that the actin cytoskeleton regulates this functional interaction by influencing the organization of membrane lipids.
    Materialart: Online-Ressource
    ISSN: 1059-1524 , 1939-4586
    Sprache: Englisch
    Verlag: American Society for Cell Biology (ASCB)
    Publikationsdatum: 2016
    ZDB Id: 1474922-1
    SSG: 12
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 3
    In: Molecular Biology of the Cell, American Society for Cell Biology (ASCB), Vol. 32, No. 18 ( 2021-08-19), p. 1624-1633
    Kurzfassung: Histone deacetylase inhibitors, such as valproic acid (VPA), have important clinical therapeutic and cellular reprogramming applications. They induce chromatin reorganization that is associated with altered cellular morphology. However, there is a lack of comprehensive characterization of VPA-induced changes of nuclear size and shape. Here, we quantify 3D nuclear morphology of primary human astrocyte cells treated with VPA over time (hence, 4D). We compared volumetric and surface-based representations and identified seven features that jointly discriminate between normal and treated cells with 85% accuracy on day 7. From day 3, treated nuclei were more elongated and flattened and then continued to morphologically diverge from controls over time, becoming larger and more irregular. On day 7, most of the size and shape descriptors demonstrated significant differences between treated and untreated cells, including a 24% increase in volume and 6% reduction in extent (shape regularity) for treated nuclei. Overall, we show that 4D morphometry can capture how chromatin reorganization modulates the size and shape of the nucleus over time. These nuclear structural alterations may serve as a biomarker for histone (de-)acetylation events and provide insights into mechanisms of astrocytes-to-neurons reprogramming.
    Materialart: Online-Ressource
    ISSN: 1059-1524 , 1939-4586
    Sprache: Englisch
    Verlag: American Society for Cell Biology (ASCB)
    Publikationsdatum: 2021
    ZDB Id: 1474922-1
    SSG: 12
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 4
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    American Society for Cell Biology (ASCB) ; 2002
    In:  Molecular Biology of the Cell Vol. 13, No. 7 ( 2002-07), p. 2421-2435
    In: Molecular Biology of the Cell, American Society for Cell Biology (ASCB), Vol. 13, No. 7 ( 2002-07), p. 2421-2435
    Kurzfassung: Insulin regulates glucose uptake into fat and muscle by modulating the distribution of the GLUT4 glucose transporter between the surface and interior of cells. The GLUT4 trafficking pathway overlaps with the general endocytic recycling pathway, but the degree and functional significance of the overlap are not known. In this study of intact adipocytes, we demonstrate, by using a compartment-specific fluorescence-quenching assay, that GLUT4 is equally distributed between two intracellular pools: the transferrin receptor-containing endosomes and a specialized compartment that excludes the transferrin receptor. These pools of GLUT4 are in dynamic communication with one another and with the cell surface. Insulin-induced redistribution of GLUT4 to the surface requires mobilization of both pools. These data establish a role for the general endosomal system in the specialized, insulin-regulated trafficking of GLUT4. Trafficking through the general endosomal system is regulated by rab11. Herein, we show that rab11 is required for the transport of GLUT4 from endosomes to the specialized compartment and for the insulin-induced translocation to the cell surface, emphasizing the importance of the general endosomal pathway in the specialized trafficking of GLUT4. Based on these findings we propose a two-step model for GLUT4 trafficking in which the general endosomal recycling compartment plays a specialized role in the insulin-regulated traffic of GLUT4. This compartment-based model provides the framework for understanding insulin-regulated trafficking at a molecular level.
    Materialart: Online-Ressource
    ISSN: 1059-1524 , 1939-4586
    Sprache: Englisch
    Verlag: American Society for Cell Biology (ASCB)
    Publikationsdatum: 2002
    ZDB Id: 1474922-1
    SSG: 12
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 5
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    American Society for Cell Biology (ASCB) ; 2017
    In:  Molecular Biology of the Cell Vol. 28, No. 23 ( 2017-11-07), p. 3181-3192
    In: Molecular Biology of the Cell, American Society for Cell Biology (ASCB), Vol. 28, No. 23 ( 2017-11-07), p. 3181-3192
    Kurzfassung: Noncentrosomal microtubule (MT) nucleation at the Golgi generates MT network asymmetry in motile vertebrate cells. Investigating the Golgi-derived MT (GDMT) distribution, we find that MT asymmetry arises from nonrandom nucleation sites at the Golgi (hotspots). Using computational simulations, we propose two plausible mechanistic models of GDMT nucleation leading to this phenotype. In the “cooperativity” model, formation of a single GDMT promotes further nucleation at the same site. In the “heterogeneous Golgi” model, MT nucleation is dramatically up-regulated at discrete and sparse locations within the Golgi. While MT clustering in hotspots is equally well described by both models, simulating MT length distributions within the cooperativity model fits the data better. Investigating the molecular mechanism underlying hotspot formation, we have found that hotspots are significantly smaller than a Golgi subdomain positive for scaffolding protein AKAP450, which is thought to recruit GDMT nucleation factors. We have further probed potential roles of known GDMT-promoting molecules, including γ-TuRC-mediated nucleation activator (γ-TuNA) domain-containing proteins and MT stabilizer CLASPs. While both γ-TuNA inhibition and lack of CLASPs resulted in drastically decreased GDMT nucleation, computational modeling revealed that only γ-TuNA inhibition suppressed hotspot formation. We conclude that hotspots require γ-TuNA activity, which facilitates clustered GDMT nucleation at distinct Golgi sites.
    Materialart: Online-Ressource
    ISSN: 1059-1524 , 1939-4586
    Sprache: Englisch
    Verlag: American Society for Cell Biology (ASCB)
    Publikationsdatum: 2017
    ZDB Id: 1474922-1
    SSG: 12
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 6
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    American Society for Cell Biology (ASCB) ; 2003
    In:  Molecular Biology of the Cell Vol. 14, No. 3 ( 2003-03), p. 1074-1084
    In: Molecular Biology of the Cell, American Society for Cell Biology (ASCB), Vol. 14, No. 3 ( 2003-03), p. 1074-1084
    Kurzfassung: The degradation of extracellular matrix (ECM) by matrix metalloproteases is crucial in physiological and pathological cell invasion alike. Degradation occurs at specific sites where invasive cells make contact with the ECM via specialized plasma membrane protrusions termed invadopodia. Herein, we show that the dynamin 2 (Dyn2), a GTPase implicated in the control of actin-driven cytoskeletal remodeling events and membrane transport, is necessary for focalized matrix degradation at invadopodia. Dynamin was inhibited by using two approaches: 1) expression of dominant negative GTPase-impaired or proline-rich domain-deleted Dyn2 mutants; and 2) inhibition of the dynamin regulator calcineurin by cyclosporin A. In both cases, the number and extension of ECM degradation foci were drastically reduced. To understand the site and mechanism of dynamin action, the cellular structures devoted to ECM degradation were analyzed by correlative confocal light-electron microscopy. Invadopodia were found to be organized into a previously undescribed ECM-degradation structure consisting of a large invagination of the ventral plasma membrane surface in close spatial relationship with the Golgi complex. Dyn2 seemed to be concentrated at invadopodia.
    Materialart: Online-Ressource
    ISSN: 1059-1524 , 1939-4586
    Sprache: Englisch
    Verlag: American Society for Cell Biology (ASCB)
    Publikationsdatum: 2003
    ZDB Id: 1474922-1
    SSG: 12
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 7
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    American Society for Cell Biology (ASCB) ; 2002
    In:  Molecular Biology of the Cell Vol. 13, No. 5 ( 2002-05), p. 1778-1791
    In: Molecular Biology of the Cell, American Society for Cell Biology (ASCB), Vol. 13, No. 5 ( 2002-05), p. 1778-1791
    Kurzfassung: The endoplasmic reticulum (ER) is divided into rough and smooth domains (RER and SER). The two domains share most proteins, but RER is enriched in some membrane proteins by an unknown mechanism. We studied RER protein targeting by expressing fluorescent protein fusions to ER membrane proteins in Caenorhabditis elegans. In several cell types RER and general ER proteins colocalized, but in neurons RER proteins were concentrated in the cell body, whereas general ER proteins were also found in neurites. Surprisingly RER membrane proteins diffused rapidly within the cell body, indicating they are not localized by immobilization. Ribosomes were also concentrated in the cell body, suggesting they may be in part responsible for targeting RER membrane proteins.
    Materialart: Online-Ressource
    ISSN: 1059-1524 , 1939-4586
    Sprache: Englisch
    Verlag: American Society for Cell Biology (ASCB)
    Publikationsdatum: 2002
    ZDB Id: 1474922-1
    SSG: 12
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 8
    In: Molecular Biology of the Cell, American Society for Cell Biology (ASCB), Vol. 10, No. 9 ( 1999-09), p. 2945-2953
    Kurzfassung: Dendritic mRNA transport and local translation at individual potentiated synapses may represent an elegant way to form synaptic memory. Recently, we characterized Staufen, a double-stranded RNA-binding protein, in rat hippocampal neurons and showed its presence in large RNA-containing granules, which colocalize with microtubules in dendrites. In this paper, we transiently transfect hippocampal neurons with human Staufen-green fluorescent protein (GFP) and find fluorescent granules in the somatodendritic domain of these cells. Human Stau-GFP granules show the same cellular distribution and size and also contain RNA, as already shown for the endogenous Stau particles. In time-lapse videomicroscopy, we show the bidirectional movement of these Staufen-GFP–labeled granules from the cell body into dendrites and vice versa. The average speed of these particles was 6.4 μm/min with a maximum velocity of 24.3 μm/min. Moreover, we demonstrate that the observed assembly into granules and their subsequent dendritic movement is microtubule dependent. Taken together, we have characterized a novel, nonvesicular, microtubule-dependent transport pathway involving RNA-containing granules with Staufen as a core component. This is the first demonstration in living neurons of movement of an essential protein constituent of the mRNA transport machinery.
    Materialart: Online-Ressource
    ISSN: 1059-1524 , 1939-4586
    Sprache: Englisch
    Verlag: American Society for Cell Biology (ASCB)
    Publikationsdatum: 1999
    ZDB Id: 1474922-1
    SSG: 12
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 9
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    Online-Ressource
    American Society for Cell Biology (ASCB) ; 2009
    In:  Molecular Biology of the Cell Vol. 20, No. 6 ( 2009-03-15), p. 1763-1771
    In: Molecular Biology of the Cell, American Society for Cell Biology (ASCB), Vol. 20, No. 6 ( 2009-03-15), p. 1763-1771
    Kurzfassung: Caveolins are plasma membrane–associated proteins that colocalize with, and stabilize caveolae. Their functions remain unclear although they are known to be involved in specific events in cell signaling and endocytosis. Caenorhabditis elegans encodes two caveolin genes, cav-1 and cav-2. We show that cav-2 is expressed in the intestine where it is localized to the apical membrane and in intracellular bodies. Using the styryl dye FM4-64 and BODIPY-labeled lactosylceramide, we show that the intestinal cells of cav-2 animals are defective in the apical uptake of lipid markers. These results suggest parallels with the function of caveolins in lipid homeostasis in mammals. We also show that CAV-2 depletion suppresses the abnormal accumulation of vacuoles that result from defective basolateral recycling in rme-1 and rab-10 mutants. Analysis of fluorescent markers of basolateral endocytosis and recycling suggest that endocytosis is normal in cav-2 mutants and thus, that the suppression of basolateral recycling defects in cav-2 mutants is due to changes in intracellular trafficking pathways. Finally, cav-2 mutants also have abnormal trafficking of yolk proteins. Taken together, these data indicate that caveolin-2 is an integral component of the trafficking network in the intestinal cells of C. elegans.
    Materialart: Online-Ressource
    ISSN: 1059-1524 , 1939-4586
    Sprache: Englisch
    Verlag: American Society for Cell Biology (ASCB)
    Publikationsdatum: 2009
    ZDB Id: 1474922-1
    SSG: 12
    Standort Signatur Einschränkungen Verfügbarkeit
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  • 10
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    American Society for Cell Biology (ASCB) ; 2002
    In:  Molecular Biology of the Cell Vol. 13, No. 4 ( 2002-04), p. 1282-1297
    In: Molecular Biology of the Cell, American Society for Cell Biology (ASCB), Vol. 13, No. 4 ( 2002-04), p. 1282-1297
    Kurzfassung: Nucleoporin 98 (Nup98), a glycine-leucine-phenylalanine-glycine (GLFG) amino acid repeat-containing nucleoporin, plays a critical part in nuclear trafficking. Injection of antibodies to Nup98 into the nucleus blocks the export of most RNAs. Nup98 contains binding sites for several transport factors; however, the mechanism by which this nucleoporin functions has remained unclear. Multiple subcellular localizations have been suggested for Nup98. Here we show that Nup98 is indeed found both at the nuclear pore complex and within the nucleus. Inside the nucleus, Nup98 associates with a novel nuclear structure that we term the GLFG body because the GLFG domain of Nup98 is required for targeting to this structure. Photobleaching of green fluorescent protein-Nup98 in living cells reveals that Nup98 is mobile and moves between these different localizations. The rate of recovery after photobleaching indicates that Nup98 interacts with other, less mobile, components in the nucleoplasm. Strikingly, given the previous link to nuclear export, the mobility of Nup98 within the nucleus and at the pore is dependent on ongoing transcription by RNA polymerases I and II. These data give rise to a model in which Nup98 aids in direction of RNAs to the nuclear pore and provide the first potential mechanism for the role of a mobile nucleoporin.
    Materialart: Online-Ressource
    ISSN: 1059-1524 , 1939-4586
    Sprache: Englisch
    Verlag: American Society for Cell Biology (ASCB)
    Publikationsdatum: 2002
    ZDB Id: 1474922-1
    SSG: 12
    Standort Signatur Einschränkungen Verfügbarkeit
    BibTip Andere fanden auch interessant ...
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