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  • 1
    Buch
    Buch
    Oxford [u.a.] : Pergamon Press
    Materialart: Buch
    Seiten: VI, 641 S , graph. Darst
    Serie: Deep sea research 40,1/2
    Sprache: Englisch
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  • 2
    Publikationsdatum: 2022-05-25
    Beschreibung: Author Posting. © Inter-Research, 2008. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Aquatic Microbial Ecology 53 (2008): 21-38, doi:10.3354/ame01230.
    Beschreibung: We now have a relatively good idea of how bulk microbial processes shape the cycling of organic matter and nutrients in the sea. The advent of the molecular biology era in microbial ecology has resulted in advanced knowledge about the diversity of marine microorganisms, suggesting that we might have reached a high level of understanding of carbon fluxes in the oceans. However, it is becoming increasingly clear that there are large gaps in the understanding of the role of bacteria in regulating carbon fluxes. These gaps may result from methodological as well as conceptual limitations. For example, should bacterial production be measured in the light? Can bacterial production conversion factors be predicted, and how are they affected by loss of tracers through respiration? Is it true that respiration is relatively constant compared to production? How can accurate measures of bacterial growth efficiency be obtained? In this paper, we discuss whether such questions could (or should) be addressed. Ongoing genome analyses are rapidly widening our understanding of possible metabolic pathways and cellular adaptations used by marine bacteria in their quest for resources and struggle for survival (e.g. utilization of light, acquisition of nutrients, predator avoidance, etc.). Further, analyses of the identity of bacteria using molecular markers (e.g. subgroups of Bacteria and Archaea) combined with activity tracers might bring knowledge to a higher level. Since bacterial growth (and thereby consumption of DOC and inorganic nutrients) is likely regulated differently in different bacteria, it will be critical to learn about the life strategies of the key bacterial species to achieve a comprehensive understanding of bacterial regulation of C fluxes. Finally, some processes known to occur in the microbial food web are hardly ever characterized and are not represented in current food web models. We discuss these issues and offer specific comments and advice for future research agendas.
    Beschreibung: Our work was supported by the following grants: NSF grant 0217282 (H.D.), Spanish MEC grant MODIVUS (J.M.G.), the Swedish Science Council (J.P.), the IEO time-series RADIALES programme (X.A.G.M.), the Earth and Life Science Division of the Dutch Science Foundation, ARCHIMEDES project, #835.20.023 (G.J.H.).
    Schlagwort(e): Carbon flux ; Microbial ecology ; Ocean ; Bacteria ; Protists ; Light ; Genomics ; Chemoautotrophy ; Models
    Repository-Name: Woods Hole Open Access Server
    Materialart: Article
    Format: application/pdf
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  • 3
    Publikationsdatum: 2022-05-25
    Beschreibung: Author Posting. © American Institute of Biological Sciences, 2012. This article is posted here by permission of American Institute of Biological Sciences for personal use, not for redistribution. The definitive version was published in BioScience 62 (2012): 342-253, doi:10.1525/bio.2012.62.4.6.
    Beschreibung: The US Long Term Ecological Research (LTER) Network enters its fourth decade with a distinguished record of achievement in ecological science. The value of long-term observations and experiments has never been more important for testing ecological theory and for addressing today's most difficult environmental challenges. The network's potential for tackling emergent continent-scale questions such as cryosphere loss and landscape change is becoming increasingly apparent on the basis of a capacity to combine long-term observations and experimental results with new observatory-based measurements, to study socioecological systems, to advance the use of environmental cyberinfrastructure, to promote environmental science literacy, and to engage with decisionmakers in framing major directions for research. The long-term context of network science, from understanding the past to forecasting the future, provides a valuable perspective for helping to solve many of the crucial environmental problems facing society today.
    Beschreibung: 2012-10-01
    Schlagwort(e): Coupled natural—human systems ; Cyberinfrastructure ; Environmental observatories ; Environmental education ; Socioecological systems
    Repository-Name: Woods Hole Open Access Server
    Materialart: Article
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  • 4
    Publikationsdatum: 2022-05-25
    Beschreibung: Author Posting. © American Institute of Biological Sciences, 2012. This article is posted here by permission of American Institute of Biological Sciences for personal use, not for redistribution. The definitive version was published in BioScience 62 (2012): 405-415, doi:10.1525/bio.2012.62.4.11.
    Beschreibung: The cryosphere—the portion of the Earth's surface where water is in solid form for at least one month of the year—has been shrinking in response to climate warming. The extents of sea ice, snow, and glaciers, for example, have been decreasing. In response, the ecosystems within the cryosphere and those that depend on the cryosphere have been changing. We identify two principal aspects of ecosystem-level responses to cryosphere loss: (1) trophodynamic alterations resulting from the loss of habitat and species loss or replacement and (2) changes in the rates and mechanisms of biogeochemical storage and cycling of carbon and nutrients, caused by changes in physical forcings or ecological community functioning. These changes affect biota in positive or negative ways, depending on how they interact with the cryosphere. The important outcome, however, is the change and the response the human social system (infrastructure, food, water, recreation) will have to that change.
    Beschreibung: The authors wish to thank the funding provided by the National Science Foundation’s (NSF) Long Term Ecological Research (LTER) Network for supporting our long-term studies, in which we track the ecosystem response to the disappearing cryosphere. NSF LTER Site Grants OPP 0823101, OPP 1115245, DEB 1114804, DEB-1026415, DEB-0620579, and DEB-1027341 supported the authors during the preparation of this article.
    Beschreibung: 2012-10-01
    Schlagwort(e): Cryosphere ; Ecosystem response ; Environmental observatories
    Repository-Name: Woods Hole Open Access Server
    Materialart: Article
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  • 5
    Publikationsdatum: 2022-05-25
    Beschreibung: Author Posting. © Inter-Research, 2013. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Aquatic Microbial Ecology 70 (2013): 215-232, doi:10.3354/ame01655.
    Beschreibung: The significance of microzooplankton as grazers in pelagic ecosystems has been established, yet relatively few studies of microzooplankton grazing, compared to that of macrozooplankton, have been conducted in the Southern Ocean. We report phytoplankton and bacterial growth and grazing mortality rates along the Western Antarctic Peninsula (WAP), a region of rapid climate change. Growth and grazing rates were determined by dilution experiments at select stations along the WAP in January of 2009 to 2011 and in the nearshore waters near Palmer Station in February and March 2011. Microzooplankton exerted higher grazing pressure on bacteria compared to phytoplankton along the WAP and also selectively grazed on smaller phytoplankton (picoautotrophs and nanophytoplankton) and on the more actively growing (high nucleic acid) bacterial cells. Among all phytoplankton size classes, growth rates ranged from undetectable (i.e. not significant; NS) to 0.99 d-1, grazing mortality rates were NS to 0.56 d-1, and microzooplankton removed 〈100% of daily phytoplankton production in all but one experiment. For high and low nucleic acid content bacteria, growth rates were NS to 0.95 d-1, and grazing mortality rates were NS to 0.43 d-1; microzooplankton often removed 〉100% of daily bacterial production. There was a significant (albeit weak) exponential relationship between temperature and phytoplankton mortality, although the range of experimental temperatures was small. The present study provides a reference point of microzooplankton grazing impact along the WAP in the summer and contributes valuable information to studies modeling the flow of carbon through the WAP food web, improving our ability to predict climate-induced changes in the WAP ecosystem.
    Beschreibung: The Palmer LTER is supported by National Science Foundation award ANT-0823101 from the Division of Polar Programs Antarctic Organisms and Ecosystems Program. Additional funding to support the participation of L.M.G. on a Palmer LTER cruise was provided by A. G. ‘Casey’ Duplantier Jr. and the 1st Advantage Federal Credit Union of Newport News, Virginia, USA.
    Schlagwort(e): Microzooplankton ; Protozoa ; Grazing ; Western Antarctic Peninsula ; Southern Ocean ; Climate
    Repository-Name: Woods Hole Open Access Server
    Materialart: Article
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  • 6
    Publikationsdatum: 2022-05-25
    Beschreibung: Author Posting. © Inter-Research, 2014. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Aquatic Microbial Ecology 73 (2014): 107-121, doi:10.3354/ame01703.
    Beschreibung: The classic view of polar ocean foodwebs emphasizes large predators sustained by energy and material flow through short, efficient diatom-krill-predator food chains. Bacterial activity is generally low in cold polar waters compared to that at lower latitudes. This view appears to be changing, with new studies of microbial foodwebs in Arctic and Antarctic oceans. We characterized bacterial, archaeal, and eukaryotic community diversity and composition from 2 depths (near surface and below the euphotic zone) at 4 sites, including the inshore and offshore, and north and south corners of a sampling grid along the western coast of the Antarctic Peninsula (WAP). We detected up to 2-fold higher richness in microbial eukaryotes at surface and deep inshore northern stations as compared to southern stations, but offshore northern and southern stations revealed either no trend or higher richness at depth in the south. In contrast, bacterial and archaeal richness showed no significant differences either inshore or offshore at northern versus southern extents, but did vary with depth. Archaea were virtually absent in summer surface waters, but were present in summer deep and winter surface samples. Overall, winter bacterial and archaeal assemblages most closely resembled summer sub-euphotic zone assemblages, reflecting well-established seasonal patterns of water column turnover and stratification that result in an isolated layer of ‘winter water’ below the euphotic zone. Inter-domain heterotroph-phototroph interactions were evident from network analysis. The WAP is among the most rapidly warming regions on earth. Our results provide a baseline against which future change in microbial communities may be assessed.
    Beschreibung: Funding was provided by NSF DEB- 0717390 to L.A.Z. (MIRADA-LTERS) and NSF Awards OPP- 0217282 and 0823101 (Palmer LTER) from the Antarctic Organisms and Ecosystems Program to H.W.D.
    Schlagwort(e): Antarctica ; MIRADA-LTERS ; Palmer LTER ; Pyrosequencing ; V6 ; V9 ; Microbial oceanography
    Repository-Name: Woods Hole Open Access Server
    Materialart: Article
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    Format: application/vnd.ms-excel
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  • 7
    Publikationsdatum: 2022-05-25
    Beschreibung: Author Posting. © Inter-Research, 2008. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Aquatic Microbial Ecology 53 (2008): 13-19, doi:10.3354/ame01220.
    Beschreibung: Bacteria, archaea and other microbes have dominated most biogeochemical processes on Earth for 〉99% of the history of life, but within the past few decades anthropogenic activity has usurped their dominance. Human activity now impacts every ecosystem on the planet, necessitating a new socio-ecological view of ecosystem processes that incorporates human perceptions, responses, activities and ideas into ecology. The concept of ecosystem services is an important link between ecosystem processes and the social sphere. These include the provisioning, regulating, cultural and supporting benefits that ecosystems provide to enhance human well-being. Many ecosystem services are provided by microbes, initiating the concept of microbial services to society—an idea long appreciated by microbial ecologists. Experimental studies of the biodiversity–ecosystem function relationship emphasizing microbial functions are inconclusive, with increasing diversity sometimes being observed to enhance function, while at other times the opposite relationship has been found. A specific function addressing the role of bacteria in helping or hindering carbon storage in the deep ocean in response to iron fertilization is similarly uncertain. Bacteria respond positively to mesoscale iron additions in many cases, but in doing so, may retard carbon storage by decomposing sinking particles. Human exploitation of microbial services to enhance planetary sustainability must be based on focused studies of microbial processes in a human-dominated world.
    Beschreibung: The work for this manuscript was supported in part by NSF OPP 0217282.
    Schlagwort(e): Ecosystem services ; Microbial services ; Microbial diversity function ; Sustainability ; Iron fertilization
    Repository-Name: Woods Hole Open Access Server
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  • 8
    Publikationsdatum: 2022-05-25
    Beschreibung: Author Posting. © Inter-Research, 2011. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Aquatic Microbial Ecology 64: 205-220, doi:10.3354/ame01519.
    Beschreibung: Along the western Antarctic Peninsula, marine bacterioplankton respond to the spring phytoplankton bloom with increases in abundance, production and growth rates, and a seasonal succession in bacterial community composition (BCC). We investigated the response of the bacterial community to experimental additions of glucose and ammonium, alone or in combination, incubated in replicate carboys (each: 50 l) over 10 d in November 2006. Changes in bulk properties (abundance, production rates) in the incubations resembled observations in the nearshore environment over 8 seasons (2001 to 2002 through 2008 to 2009) at Palmer Stn (64.8°S, 64.1°W). Changes in bulk properties and BCC in ammonium-amended carboys were small relative to controls, compared to the glucose-amended treatments. The BCC in Day 0 and Day 10 controls and ammonium treatments were 〉72% similar when assessed by denaturing-gradient gel electrophoresis (DGGE), length heterogeneity polymerase chain reaction (LH-PCR) and capillary electrophoresis single-strand conformation polymorphism (CE-SSCP) fingerprinting techniques. Bacterial abundance increased 2- to 10-fold and leucine incorporation rates increased 2- to 30-fold in the glucose treatments over 6 d. The BCC in carboys receiving glucose (with or without ammonium) remained 〉60% similar to that in Day 0 controls at 6 d and evolved to 〈20% similar to that in Day 0 controls after 10 d incubation. The increases in bacterial production rates, and the changes in BCC, suggest that selection for glucose-utilizing bacteria was slow under the ambient environmental conditions. The results suggest that organic carbon enrichment is a major factor influencing the observed winter-to-summer increase in bacterial abundance and activity. In contrast, the BCC was relatively robust, changing little until after repeated additions of glucose and prolonged (~10 d) incubation.
    Beschreibung: H.W.D. and A.E.M. were supported by US NSF grants ANT-0632278 and ANT- 0632389, respectively. This research was partly supported by NSF OPP-0217282 (Palmer LTER). J.F.G. was supported by the Institut Français pour la Recherche et la Technologie Polaires (IFRTP).
    Schlagwort(e): Antarctica ; Bacterial community composition ; Bioassay ; Marine bacterioplankton
    Repository-Name: Woods Hole Open Access Server
    Materialart: Article
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  • 9
    Publikationsdatum: 2022-05-25
    Beschreibung: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Marine Ecology Progress Series 492 (2013): 253-272, doi:10.3354/meps10534.
    Beschreibung: An inverse food-web model for the western Antarctic Peninsula (WAP) pelagic food web was constrained with data from Palmer Long Term Ecological Research (PAL-LTER) project annual austral summer sampling cruises. Model solutions were generated for 2 regions with Adélie penguin Pygoscelis adeliae colonies presenting different population trends (a northern and a southern colony) for a 12 yr period (1995-2006). Counter to the standard paradigm, comparisons of carbon flow through bacteria, microzooplankton, and krill showed that the diatom-krill-top predator food chain is not the dominant pathway for organic carbon exchanges. The food web is more complex, including significant contributions by microzooplankton and the microbial loop. Using both inverse model results and network indices, it appears that in the northern WAP the food web is dominated by the microbial food web, with a temporal trend toward its increasing importance. The dominant pathway for the southern WAP food web varies from year to year, with no detectable temporal trend toward dominance of microzooplankton versus krill. In addition, sensitivity analyses indicated that the northern colony of Adélie penguins, whose population size has been declining over the past 35 yr, appears to have sufficient krill during summer to sustain its basic metabolic needs and rear chicks, suggesting the importance of other processes in regulating the Adélie population decline.
    Beschreibung: We acknowledge support from the National Science Foundation, Office of Polar Programs, Award 0823101 (Antarctic Organisms and Ecosystems Program) to Palmer LTER.
    Schlagwort(e): Inverse model ; Food web ; Antarctica ; Microzooplankton ; Krill ; Ecosystem state change ; Climate change
    Repository-Name: Woods Hole Open Access Server
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  • 10
    Publikationsdatum: 2022-05-26
    Beschreibung: Author Posting. © Inter-Research, 2010. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Aquatic Microbial Ecology 60 (2010): 273-287, doi:10.3354/ame01427.
    Beschreibung: Previous studies have focused on the role of labile dissolved organic matter (DOM) (defined as turnover time of ~1 d) in supporting heterotrophic bacterial production, but have mostly neglected semilabile DOM (defined as turnover time of ~100 to 1000 d) as a potential substrate for heterotrophic bacterial growth. To test the hypothesis that semilabile DOM supports substantial amounts of heterotrophic bacterial production in the open ocean, we constructed a 1-dimensional epipelagic ecosystem model and applied it to 3 open ocean sites: the Arabian Sea, Equatorial Pacific and Station ALOHA in the North Pacific Subtropical Gyre. The model tracks carbon, nitrogen and phosphorus with flexible stoichiometry. This study used a large number of observations, including measurements of heterotrophic bacterial production rates and standing stocks, and DOM concentration data, to rigorously test and constrain model output. Data assimilation was successfully applied to optimize the model parameters and resulted in simultaneous representation of observed nitrate, phosphate, phytoplankton and zooplankton biomass, primary production, heterotrophic bacterial biomass and production, DOM, and suspended and sinking particulate organic matter. Across the 3 ocean ecosystems examined, the data assimilation suggests semilabile DOM may support 17 to 40% of heterotrophic bacterial carbon demand. In an experiment where bacteria only utilize labile DOM, and with more of the DOM production assigned to labile DOM, the model poorly represented the observations. These results suggest that semilabile DOM may play an important role in sustaining heterotrophic bacterial growth in diverse regions of the open ocean.
    Beschreibung: Y.W.L. was supported by fellowships from the Virginia Institute of Marine Sciences and Marine Biological Laboratory as well as NSF Grants OPP-0217282 and 0823101 to H.W.D. and VIMS and MBL, respectively. M.A.M.F.’s participation was supported in part by a grant from the NASA Ocean Biology and Biogeochemistry program (NNX07AF70G), S.C.D.’s participation was supported by an NSF grant to the Center for Microbial Oceanography, Research and Education (CMORE), NSF EF-0424599, and M.J.C. was supported in part by NSF grants EF-0424599 (C-MORE) and OCE 0425363.
    Schlagwort(e): Heterotrophic bacteria ; Semilabile dissolved organic matter ; Marine ecosystem model ; Data assimilation
    Repository-Name: Woods Hole Open Access Server
    Materialart: Article
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