GLORIA

GEOMAR Library Ocean Research Information Access

Your email was sent successfully. Check your inbox.

An error occurred while sending the email. Please try again.

Proceed reservation?

Export
Filter
  • American Association for the Advancement of Science (AAAS)  (4)
  • 1
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 378, No. 6615 ( 2022-10-07)
    Abstract: Investment in Africa over the past year with regard to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) sequencing has led to a massive increase in the number of sequences, which, to date, exceeds 100,000 sequences generated to track the pandemic on the continent. These sequences have profoundly affected how public health officials in Africa have navigated the COVID-19 pandemic. RATIONALE We demonstrate how the first 100,000 SARS-CoV-2 sequences from Africa have helped monitor the epidemic on the continent, how genomic surveillance expanded over the course of the pandemic, and how we adapted our sequencing methods to deal with an evolving virus. Finally, we also examine how viral lineages have spread across the continent in a phylogeographic framework to gain insights into the underlying temporal and spatial transmission dynamics for several variants of concern (VOCs). RESULTS Our results indicate that the number of countries in Africa that can sequence the virus within their own borders is growing and that this is coupled with a shorter turnaround time from the time of sampling to sequence submission. Ongoing evolution necessitated the continual updating of primer sets, and, as a result, eight primer sets were designed in tandem with viral evolution and used to ensure effective sequencing of the virus. The pandemic unfolded through multiple waves of infection that were each driven by distinct genetic lineages, with B.1-like ancestral strains associated with the first pandemic wave of infections in 2020. Successive waves on the continent were fueled by different VOCs, with Alpha and Beta cocirculating in distinct spatial patterns during the second wave and Delta and Omicron affecting the whole continent during the third and fourth waves, respectively. Phylogeographic reconstruction points toward distinct differences in viral importation and exportation patterns associated with the Alpha, Beta, Delta, and Omicron variants and subvariants, when considering both Africa versus the rest of the world and viral dissemination within the continent. Our epidemiological and phylogenetic inferences therefore underscore the heterogeneous nature of the pandemic on the continent and highlight key insights and challenges, for instance, recognizing the limitations of low testing proportions. We also highlight the early warning capacity that genomic surveillance in Africa has had for the rest of the world with the detection of new lineages and variants, the most recent being the characterization of various Omicron subvariants. CONCLUSION Sustained investment for diagnostics and genomic surveillance in Africa is needed as the virus continues to evolve. This is important not only to help combat SARS-CoV-2 on the continent but also because it can be used as a platform to help address the many emerging and reemerging infectious disease threats in Africa. In particular, capacity building for local sequencing within countries or within the continent should be prioritized because this is generally associated with shorter turnaround times, providing the most benefit to local public health authorities tasked with pandemic response and mitigation and allowing for the fastest reaction to localized outbreaks. These investments are crucial for pandemic preparedness and response and will serve the health of the continent well into the 21st century. Expanse of SARS-CoV-2 sequencing capacity in Africa. ( A ) African countries (shaded in gray) and institutions (red circles) with on-site sequencing facilities that are capable of producing SARS-CoV-2 whole genomes locally. ( B ) The number of SARS-CoV-2 genomes produced per country and the proportion of those genomes that were produced locally, regionally within Africa, or abroad. ( C ) Decreased turnaround time of sequencing output in Africa to an almost real-time release of genomic data.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
    RVK:
    RVK:
    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2022
    detail.hit.zdb_id: 128410-1
    detail.hit.zdb_id: 2066996-3
    detail.hit.zdb_id: 2060783-0
    SSG: 11
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 2
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 381, No. 6657 ( 2023-08-04)
    Abstract: Genetic analysis of historical individuals has the potential to help restore knowledge of people whose stories were omitted from written records. During the late 18th and early 19th centuries, Catoctin Furnace in Maryland relied on a workforce of enslaved individuals to operate the iron furnace and carry out domestic and agricultural tasks. Despite the role that Catoctin Furnace played in early US history (including supplying munitions during the Revolutionary War), relatively little is known about the African Americans who labored there or their descendants compared with the furnace’s later, predominantly white workforce. RATIONALE We produced genome-wide data for 27 individuals buried in the Catoctin Furnace African American Cemetery and compared them to ~9.3 million consenting research participants genotyped by 23andMe, Inc., to address the following questions: (i) How were the Catoctin individuals related to each other? (ii) What were the sources of their African and European ancestry? (iii) Where in the US do their genetic relatives live today, including their direct descendants? (iv) What can their genomes reveal about their health? RESULTS We identified five genetic families, consisting of biological mothers, children, and siblings, among the Catoctin individuals. In most cases, biological family members were buried in close proximity. All but one of the Catoctin individuals had primarily African ancestry, with variable amounts of European ancestry. To learn more about their ancestry, we developed an approach to detect identical-by-descent segments of the genome shared between the Catoctin individuals and 23andMe research participants. Identical-by-descent segments of DNA are shared by two or more people because they have been inherited from a recent common ancestor. We identified 41,799 close and distant relatives of the Catoctin individuals among 23andMe research participants. Within Africa, we found the highest rates of genetic sharing between Catoctin individuals and research participants who self-identified as belonging to the Wolof or Kongo ethnolinguistic groups. Within Europe, we observed the highest rates of genetic sharing with research participants that have ties to Great Britain and Ireland. Within the US, participants from the South showed elevated rates of sharing, largely reflecting distant connections to 23andMe research participants with sub-Saharan African ancestry (possibly tracing back to shared common ancestors in Africa). When we considered genetic relatives who share the most identical DNA with the Catoctin individuals, we observed the highest rates of sharing in Maryland, suggesting that at least some descendants stayed in the region after the furnace’s transition away from enslaved and paid African American labor. Finally, we found that some of the Catoctin individuals carried risk factors for sickle cell anemia and glucose-6-phosphate dehydrogenase deficiency, genetic diseases that are common in African Americans today. CONCLUSION These results demonstrate the power of joint analysis of DNA from historical individuals and the extremely large datasets generated through direct-to-consumer ancestry testing, and they serve as a model for obtaining direct insights into the genome-wide genetic ancestry of enslaved people in the historical US. Genetic connections to individuals from Catoctin Furnace African American Cemetery in Maryland. A timeline highlighting major events in the history of Catoctin Furnace and the birth years of research participants in the 23andMe cohort, presented alongside maps showing the proportion of 23andMe research participants associated with geographic coordinates in the US, sub-Saharan Africa, and Europe who share genetic connections to the Catoctin individuals.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
    RVK:
    RVK:
    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2023
    detail.hit.zdb_id: 128410-1
    detail.hit.zdb_id: 2066996-3
    detail.hit.zdb_id: 2060783-0
    SSG: 11
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 3
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 375, No. 6586 ( 2022-03-18), p. 1275-1281
    Abstract: A widespread adaptive change in antiherbivore response is seen in a common plant species in urban environments across 160 cities.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
    RVK:
    RVK:
    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2022
    detail.hit.zdb_id: 128410-1
    detail.hit.zdb_id: 2066996-3
    detail.hit.zdb_id: 2060783-0
    SSG: 11
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 4
    In: Science Advances, American Association for the Advancement of Science (AAAS), Vol. 8, No. 47 ( 2022-11-25)
    Abstract: This paper reports protection against SARS-CoV-2 Omicron by Ad26.COV2.S and SpFN vaccines in macaques.
    Type of Medium: Online Resource
    ISSN: 2375-2548
    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2022
    detail.hit.zdb_id: 2810933-8
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
Close ⊗
This website uses cookies and the analysis tool Matomo. More information can be found here...