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  • American Association for Cancer Research (AACR)  (3)
  • 1
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 72, No. 8_Supplement ( 2012-04-15), p. 4797-4797
    Abstract: About 10-15% of all breast cancers are basal-like breast cancers (BLBCs) that are highly aggressive and lack effective targeted therapeutic options as they lack ER, PR and Her-2. Reversible phosphorylation of proteins is one the most important post-translational modifications and is involved in almost all kinds of cellular processes. Tyrosine phosphorylation (pY) accounts for a minority of total phosphorylation, less than 0.1% by overall abundance. However, pY plays a disproportionately large role in diseases especially in cancer. More than half of the 90 tyrosine kinases identified in the human proteome have been implicated in cancer through gain-of-function mutations, gene amplification, overexpression, or as tumor suppressors and become attractive therapeutic targets. To assess activated tyrosine kinase signaling pathways in TNBCs, we collected a panel of 28 publicly available triple-negative breast cancer cell lines and systematically analyzed the invasiveness and anchorage independent growth of this panel of cell lines. We carried out global quantitative phosphotyrosine profiling using high resolution Fourier transform mass spectrometry. In all, we identified 2,133 tyrosine-phosphorylated peptides from more than 800 proteins. A number of tyrosine kinases were found to be differentially phosphorylated in different sets of breast cancer cells. Pathway analysis revealed that phosphorylation level of certain oncogenic kinases including EGFR, MET, FAK1 and SRC was elevated in a majority of basal-like breast cancer cells. Notably, multiple members of EPH receptor family, EPHA1, EPHA2, EPHA3, EPHB3 and EPHB4, were hyper-phosphorylated in multiple basal-like breast cancer cells. Supervised clustering analysis of phosphorylated proteins identified specific phospho-signatures that correlated with invasiveness and anti-anoikis colony formation ability. One of these hyper-phosphorylated proteins was DYRK2, a dual specificity tyrosine kinase. We observed that DYRK2 had an effect on colony formation and invasive ability on a subset of TNBC cell lines. Overall, our global phosphoproteomic study confirms high heterogeneity in the activation status of tyrosine kinases across triple negative breast cancer cells and suggests that some of them are attractive candidates as therapeutic targets. Citation Format: {Authors}. {Abstract title} [abstract]. In: Proceedings of the 103rd Annual Meeting of the American Association for Cancer Research; 2012 Mar 31-Apr 4; Chicago, IL. Philadelphia (PA): AACR; Cancer Res 2012;72(8 Suppl):Abstract nr 4797. doi:1538-7445.AM2012-4797
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
    RVK:
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    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2012
    detail.hit.zdb_id: 2036785-5
    detail.hit.zdb_id: 1432-1
    detail.hit.zdb_id: 410466-3
    Location Call Number Limitation Availability
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  • 2
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 72, No. 8_Supplement ( 2012-04-15), p. 1269-1269
    Abstract: Pancreatic cancer is the fourth leading cause of cancer-related deaths in the United States. A number of genes that have somatic mutations including CDKN2A, SMAD4, TP53 and KRAS have been linked to pancreatic cancer. Recently, a comprehensive genomic analysis was performed in a panel of 14 primary pancreatic cancer cell lines and 10 xenografts, in which ∼1,500 somatic alterations were identified and a core set of 12 activated signaling pathways were defined. We decided to use a phosphoproteomics approach to identify tyrosine kinase signaling pathways that could serve as attractive therapeutic targets. Based on immunoblotting with anti-phosphotyrosine antibodies, we observed a heterogeneous pattern of tyrosine phosphorylation in the 14 primary pancreatic cancer cell lines whose genomes have been sequenced previously, which indicated that different tyrosine kinases were likely activated in different cells. To identify these kinases, phosphotyrosine-containing peptides were enriched by immunoprecipitation by anti-phosphotyrosine antibodies and analyzed on a high resolution Fourier transform mass spectrometer coupled to nanoflow reversed phase liquid chromatography. W employed the SILAC methodology to quantitate tyrosine phosphorylated peptides across the panel of cell lines. Our preliminary data indicates that the approach used in this study is suitable for global profiling of tyrosine kinase pathways that are abnormally activated in cancers. The differential alteration of tyrosine kinases was confirmed from the accurate quantitative tyrosine phosphoproteomic analysis. For example, HPNE, a normal pancreatic cell line showed the lowest level of phosphotyrosine levels, while each pancreatic cancer cell line could be differentiated based on its own set of activated tyrosine kinases. Interestingly, some of tyrosine kinases were activated in a small number of cell lines (e.g. AXL, SYK, DDR2, RON and RET), while other tyrosine kinases were found to be activated more broadly (e.g. YES1, TYK2, EPHA2 and EPHB4). Overall, we conclude that these aberrantly activated tyrosine kinases could be targeted to develop newer therapeutic regimens. Citation Format: {Authors}. {Abstract title} [abstract]. In: Proceedings of the 103rd Annual Meeting of the American Association for Cancer Research; 2012 Mar 31-Apr 4; Chicago, IL . Philadelphia (PA): AACR; Cancer Res 2012;72(8 Suppl):Abstract nr 1269. doi:1538-7445.AM2012-1269
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
    RVK:
    RVK:
    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2012
    detail.hit.zdb_id: 2036785-5
    detail.hit.zdb_id: 1432-1
    detail.hit.zdb_id: 410466-3
    Location Call Number Limitation Availability
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  • 3
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 72, No. 8_Supplement ( 2012-04-15), p. 985-985
    Abstract: The phosphatidylinositol 3-kinase subunit PIK3CA is frequently mutated in human cancers. PIK3CA mutations are observed in about 30% of breast cancers. Three recurrent oncogenic “hotspot” mutations comprise the majority of somatic PIK3CA mutations. Two of these mutations, E542K and E545K, occur in the helical domain found in exon 9, and the third mutation, H1047R, affects the kinase domain located within exon 20. Although many studies have implicated PIK3CA mutations with features of transformation, definitive mechanisms describing how these mutations promote cell growth and proliferation have not been fully elucidated. Two MCF10A (a normal mammary gland epithelial cell line) knock-in cell lines with E545K or H1047R hotspot mutations were used for our phosphoproteome study. We employed stable isotope labeling by amino acids in cell culture (SILAC)-based quantitative mass spectrometry to study phosphoproteomic alterations caused by PIK3CA onogenic mutations. In order to identify signaling proteins directly involved in PI3K-AKT pathway, a novel PIK3CA specific inhibitor (J124) was used to suppress PIK3CA activity. Phosphopeptides were enriched by TiO2-based strategy after strong cation exchange (SCX) fractionation and analyzed on a high resolution Fourier transform LTQ-Orbitrap Velos mass spectrometer. We identified 5,491 unique phosphopeptides from 1,546 unique proteins - of these, 2,239 peptides were hyperphosphorylated in MCF10A cell with PIK3CA mutants. Notably, the PIK3CA inhibitor, J124, could specifically suppress the phosphorylation levels of 1,187 hyperphosphorylated peptides. These are likely to be effectors of PI3Kalthough only 34 of them were previously known AKT1 substrates. By integrating data from protein microarray-based phosphorylation experiments with AKT1, we found 16 novel hyperphosphorylated proteins that were phosphorylated in vitro by AKT1. In addition to identifying novel AKT substrates, we also identified multiple receptor tyrosine kinases including EGFR, FGFR and EPHA2 to be hyperphosphorylated in PIK3CA mutant knockin cells. This novel discovery of the reverse crosstalk initiated from PI3K-AKT to RTKs could explain oncogenic consequences of cells with PIK3CA mutants such as growth factor-independent growth and invasive ability. In summary, our comprehensive phosphoproteomic study reveals that oncogenic activation of the PI3K-AKT pathway can activate a broad spectrum of signaling molecules. By integrating data from large-scale protein microarray studies, we were able to identify novel AKT substrates. The knowledge gained from these studiescan greatly enhance our understanding of the PI3K-AKT pathway and provide potential therapeutic targets for attenuating oncogenic effects of PIK3CA mutations. Citation Format: {Authors}. {Abstract title} [abstract]. In: Proceedings of the 103rd Annual Meeting of the American Association for Cancer Research; 2012 Mar 31-Apr 4; Chicago, IL. Philadelphia (PA): AACR; Cancer Res 2012;72(8 Suppl):Abstract nr 985. doi:1538-7445.AM2012-985
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
    RVK:
    RVK:
    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2012
    detail.hit.zdb_id: 2036785-5
    detail.hit.zdb_id: 1432-1
    detail.hit.zdb_id: 410466-3
    Location Call Number Limitation Availability
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