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  • AIP Publishing  (2)
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  • AIP Publishing  (2)
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  • 1
    Online Resource
    Online Resource
    AIP Publishing ; 2011
    In:  The Journal of Chemical Physics Vol. 134, No. 16 ( 2011-04-28)
    In: The Journal of Chemical Physics, AIP Publishing, Vol. 134, No. 16 ( 2011-04-28)
    Abstract: The dominant reaction pathway is a rigorous framework to microscopically compute the most probable trajectories, in nonequilibrium transitions. In the low-temperature regime, such dominant pathways encode the information about the reaction mechanism and can be used to estimate nonequilibrium averages of arbitrary observables. On the other hand, at sufficiently high temperatures, the stochastic fluctuations around the dominant paths become important and have to be taken into account. In this work, we develop a technique to systematically include the effects of such stochastic fluctuations, to order kBT. This method is used to compute the probability for a transition to take place through a specific reaction channel and to evaluate the reaction rate.
    Type of Medium: Online Resource
    ISSN: 0021-9606 , 1089-7690
    Language: English
    Publisher: AIP Publishing
    Publication Date: 2011
    detail.hit.zdb_id: 3113-6
    detail.hit.zdb_id: 1473050-9
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  • 2
    Online Resource
    Online Resource
    AIP Publishing ; 2011
    In:  The Journal of Chemical Physics Vol. 134, No. 2 ( 2011-01-14)
    In: The Journal of Chemical Physics, AIP Publishing, Vol. 134, No. 2 ( 2011-01-14)
    Abstract: Using the dominant reaction pathways method, we perform an ab initio quantum-mechanical simulation of a conformational transition of a peptide chain. The method we propose makes it possible to investigate the out-of-equilibrium dynamics of these systems, without resorting to an empirical representation of the molecular force field. It also allows to study rare transitions involving rearrangements in the electronic structure. By comparing the results of the ab initio simulation with those obtained by employing a standard force field, we discuss its capability to describe the nonequilibrium dynamics of conformational transitions.
    Type of Medium: Online Resource
    ISSN: 0021-9606 , 1089-7690
    Language: English
    Publisher: AIP Publishing
    Publication Date: 2011
    detail.hit.zdb_id: 3113-6
    detail.hit.zdb_id: 1473050-9
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
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