Description: Understanding the development of primary production is essential for projections of the global carbon cycle in the context of climate change. A chlorophyll a hindcast that serves as a primary production indicator was obtained by fitting in situ measurements of nitrate, chlorophyll a, and temperature. The resulting fitting functions were adapted to a modeled temperature field. The method was applied to observations from the Madeira Basin, in the northeastern part of the oligotrophic North Atlantic Subtropical Gyre and yielded a chlorophyll a field from 1989 to 2008 with a monthly resolution validated with remotely measured surface chlorophyll a data by SeaWiFS. The chlorophyll a hindcast determined with our method resolved the seasonal and interannual variability in the phytoplankton biomass of the euphotic zone as well as the deep chlorophyll maximum. Moreover, it will allow estimation of carbon uptake over long time scales.

Description: The subtropical northeast Atlantic has previously been identified as a marine environment with an apparent imbalance between low nitrate supply to the surface and concurrent high export production. To better constrain the sources and fluxes of mixed layer nitrate and to assess the potential role of N2 fixation in providing new nitrogen (N), we investigated the depth distribution of nitrate δ15N and δ18O at six stations across the Azores Front in the NE Atlantic. In addition, we measured the δ15N of dissolved organic N (DON) in surface waters and of sinking particulate N collected in sediment traps at 2000 m depth between 2003 and 2005 at Station KIEL276. The nitrate isotope profiles at the majority of the hydrographic stations displayed a decrease in the δ15N from depth toward low-nitrate surface waters, concomitant with an increase in δ18O. Given that nitrate uptake by phytoplankton leads to a proportional increase in nitrate δ15N and δ18O, the observed surface water nitrate isotope anomalies (Δ(15;18) up to −6‰) indicate that nitrate assimilation is not the sole process controlling the isotopic composition of nitrate in the photic zone and implicate a significant addition of newly fixed N that is remineralized in surface and subsurface waters. Both the concentration of DON and its δ15N in surface water were spatially invariant, showing mean values of 4.7 ± 0.5 μmol L−1 and 2.6 ± 0.4‰ (n = 35), respectively, supporting the conjecture of a mostly recalcitrant DON pool. The weighted biannual mean δ15N of sinking particulate N (1.8 ± 0.8‰, n = 33) was low with respect to thermocline nitrate. The anomalous dual nitrate isotope signatures together with the low δ15N of export production and elevated nitrate-to-phosphate ratios in surface and subsurface waters strongly suggest that N2 fixation represents a substantive source of N in this part of the subtropical northeast Atlantic. Simple isotope mass balance suggests that, locally, N2 fixation supplies between 56 and 259 mmol N m−2 a−1 for phytoplankton growth in the photic zone, accounting for up to ∼40% of the estimated export production.

Description: Analysis of the demographic structure of Calanus species in the North Atlantic presents particular difficulties due to the overlapping spatial distributions of four main congeneric species (Calanus finmarchicus, Calanus helgolandicus, Calanus glacialis and Calanus hyperboreus). These species have similar morphologies, making microscopic discrimination only possible between some of the species at late copepodite or adult stages. However, molecular techniques now offer the possibility of screening significant numbers of specimens and unambiguously identifying them to species, regardless of developmental stage. Unfortunately, the processing rate of specimens by molecular methods is still too low to offer a realistic alternative to microscopy for analysis of samples from large field surveys. Here, we outline and test an approach involving the use of molecular methodology in conjunction with conventional microscopy to assess the species assignment of developmental stage abundances of Calanus congeners. Our study has highlighted many important methodological issues. First, it cannot be assumed that the species composition is homogeneous across the development stages; applying proportional species composition of adults to morphologically undistinguishable earlier development stages can result in error. The second important conclusion is that prosome length may be a highly unreliable discriminator of C. finmarchicus and C. glacialis

Description: A chlorophyll a hindcast in the Madeira Basin from 1871 to 2008 was used to analyze the long-term variability in the oligotrophic, subtropical gyres in relation to the climate change of the last century. The deep chlorophyll maximum (DCM), as dominant pattern of the chlorophyll a field, showed a fast decrease in its strength in the 1940s. An absolute minimum was reached between 1967 and 1973 when no DCM established with a recovering to the end of the time series. Long-term variability of the DCM was related to the North Atlantic Oscillation with a time delay of 9 years. The marked decrease in the 1940s was correlated to the drop of the solar radiation in transition from early brightening to global dimming. Caused by the influence of the solar radiation and maybe related to increasing global temperatures in the last century, the integrated chlorophyll a concentration decreased by about 0.7 mg m−2 in 2008 compared to 1871. The high-resolved chlorophyll a hindcast allowed an estimation of the carbon uptake by the ocean due to primary production in the euphotic zone. A rough calculation over the area of the global subtropical oceans showed 700 megaton less carbon uptake in 2008.

Description: Analysis of the demographic structure of Calanus species in the North Atlantic presents particular difficulties due to the overlapping spatial distributions of four main congeneric species (Calanus finmarchicus, Calanus helgolandicus, Calanus glacialis and Calanus hyperboreus). These species have similar morphologies, making microscopic discrimination only possible between some of the species at late copepodite or adult stages. However, molecular techniques now offer the possibility of screening significant numbers of specimens and unambiguously identifying them to species, regardless of developmental stage. Unfortunately, the processing rate of specimens by molecular methods is still too low to offer a realistic alternative to microscopy for analysis of samples from large field surveys. Here, we outline and test an approach involving the use of molecular methodology in conjunction with conventional microscopy to assess the species assignment of developmental stage abundances of Calanus congeners. Our study has highlighted many important methodological issues. First, it cannot be assumed that the species composition is homogeneous across the development stages; applying proportional species composition of adults to morphologically undistinguishable earlier development stages can result in error. The second important conclusion is that prosome length may be a highly unreliable discriminator of C. finmarchicus and C. glacialis.

Description: This dataset comprises the hydrographic measurements at KIEL276 - Time Series Data from Moored Current Meters in the Madeira Abyssal Plain at 33°N, 22°W, 5285 m water depth from March 1980 – April 2011.

Description: This dataset provides 131 CTD profiles measured on board of the German R/V Sonne (cruise SO269) in the northern South China Sea, under the project SOCLIS – South China Sea Natural Laboratory under Climatic and Anthropogenic Stress, in August and September 2019. The 131 profiles of temperature, salinity, dissolved oxygen, fluorescence, turbidity, surface irradiance (SPAR) and Photosynthetically active radiation (PAR), and sound velocity were measured using a CTD Sea-Bird SBE 911 plus, together with oxygen sensor (SBE 43), PAR sensor (Biospherical, QCP-2350 + QSR-2200), and a fluorometer (WET Labs ECO-FLNTU(RT)D). Additionally, oxygen saturation, potential temperature and sigma-theta (with reference to the surface) were calculated. The 131 CTD profiles are distributed by 81 stations and aim to study the impact of a growing anthropogenic pressure around the Pearl River Estuary into the northern shelf of the South China Sea towards the deep sea. The dataset was used to study the presence and spatial distribution of natural and synthetic estrogenic compounds and pharmaceutical and personal care products (PPCPs) in the Pearl River Estuary and northern shelf of the South China Sea.

Description: This dataset provides 37 CTD profiles measured on board of the German R/V Sonne (cruise SO269) in the northern South China Sea, under the project SOCLIS – South China Sea Natural Laboratory under Climatic and Anthropogenic Stress, in August and September 2019. The 37 profiles of temperature, salinity, dissolved oxygen, fluorescence, turbidity, surface irradiance (SPAR) and Photosynthetically active radiation (PAR), and sound velocity were measured using a CTD Sea-Bird SBE 911 plus, together with oxygen sensor (SBE 43), PAR sensor (Biospherical, QCP-2350 + QSR-2200), and a fluorometer (WET Labs ECO-FLNTU(RT)D). Additionally, dissolved oxygen, potential temperature and sigma-theta (with reference to the surface) were calculated. The 37 additional CTD files complement the physical oceanography dataset (Waniek et al., 2021).

Description: This set provides 68 CTD profiles of temperature, conductivity, dissolved oxygen, fluorescence, turbidity, Surface Photosynthetically Active Radiation (SPAR) and sound velocity measured on board the Chinese R/V Hai Yang Di Zhi Shi Hao in September 2018, in the northern South China Sea, within the project Megacity's fingerprint in Chinese marginal seas: Investigation of pollutant fingerprints and dispersal. Additionally, oxygen saturation, salinity, potential temperature and potential density are also provided. The dataset was used to study the presence and spatial distribution of natural and synthetic estrogenic compounds and pharmaceutical and personal care products (PPCPs) in the Pearl River Estuary and northern shelf of the South China Sea.

Description: The distribution of diatoms, coccolithophores and planktic foraminifers mirrored the hydrographic and trophic conditions of the surface ocean (0-100 m) across the upwelling area off the Oman coast to the central Arabian Sea during May/June 1997 and July/August 1995. The number of diatoms was increased in waters with local temperature minimum and enhanced nutrient concentration (nitrate, phosphate, silicate) caused by upwelling. Vegetative cells of Chaetoceros dominated the diatom assemblage in the coastal upwelling area. Towards the more nutrient depleted and stratified surface waters to the southeast, the number of diatoms decreased, coccolithophore and planktic foraminiferal numbers increased, and floral and faunal composition changed. In particular, the transition between the eutrophic upwelling region off Oman and the oligotrophic central Arabian Sea was marked by moderate nutrient concentration, and high coccolithophore and foraminifer numbers. Florisphaera profunda, previously often referred as a 'lower-photic-zone-species', was frequent in water depths as shallow as 20 m, and at high nutrient concentration up to 14 µmol NO3/l and 1.2 µmol PO4/. To the oligotrophic southeast of the divergence, cell densities of coccolithophores declined and Umbellosphaera irregularis prevailed throughout the water column down to 100 m depth. In general, total coccolithophore numbers were limited by nutrient threshold concentration, with low numbers (〈10*10**3 cells/l) at high [NO3] and [PO4], and high numbers (〉70*10**3 cells/l) at low [NO3] and [PO4]. The components of the complex microplankton succession, diatoms, coccoliths and planktic foraminifers (and possibly others), should ideally be used as a combined paleoceanographic proxy. Consequently, models on plankton ecology should be resolved at least for the seasonality, to account for the bias of paleoceanographic transfer calculations.