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  • 1
    Online Resource
    Online Resource
    Oxford University Press (OUP) ; 2005
    In:  FEMS Microbiology Ecology Vol. 52, No. 2 ( 2005-04), p. 185-195
    In: FEMS Microbiology Ecology, Oxford University Press (OUP), Vol. 52, No. 2 ( 2005-04), p. 185-195
    Type of Medium: Online Resource
    ISSN: 0168-6496 , 1574-6941
    RVK:
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2005
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  • 2
    In: Applied and Environmental Microbiology, American Society for Microbiology, Vol. 74, No. 9 ( 2008-05), p. 2841-2851
    Abstract: We studied the impact of NO 3 − on the bacterial community composition, diversity, and function in in situ industrial, anaerobic biofilms by combining microsensor profiling, 15 N and 35 S labeling, and 16S rRNA gene-based fingerprinting. Biofilms were grown on carbon steel coupons within a system designed to treat seawater for injection into an oil field for pressurized oil recovery. NO 3 − was added to the seawater in an attempt to prevent bacterial H 2 S generation and microbially influenced corrosion in the field. Microprofiling of nitrogen compounds and redox potential inside the biofilms showed that the zone of highest metabolic activity was located close to the metal surface, correlating with a high bacterial abundance in this zone. Upon addition, NO 3 − was mainly reduced to NO 2 − . In biofilms grown in the absence of NO 3 − , redox potentials of 〈 −450 mV at the metal surface suggested the release of Fe 2+ . NO 3 − addition to previously untreated biofilms induced a decline (65%) in bacterial species richness, with Methylophaga - and Colwellia -related sequences having the highest number of obtained clones in the clone library. In contrast, no changes in community composition and potential NO 3 − reduction occurred upon subsequent withdrawal of NO 3 − . Active sulfate reduction was below detection levels in all biofilms, but S isotope fractionation analysis of sulfide deposits suggested that it must have occurred either at low rates or episodically. Scanning electron microscopy revealed that pitting corrosion occurred on all coupons, independent of the treatment. However, uniform corrosion was clearly mitigated by NO 3 − addition.
    Type of Medium: Online Resource
    ISSN: 0099-2240 , 1098-5336
    RVK:
    Language: English
    Publisher: American Society for Microbiology
    Publication Date: 2008
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  • 3
    Online Resource
    Online Resource
    American Society for Microbiology ; 2005
    In:  Applied and Environmental Microbiology Vol. 71, No. 10 ( 2005-10), p. 6134-6141
    In: Applied and Environmental Microbiology, American Society for Microbiology, Vol. 71, No. 10 ( 2005-10), p. 6134-6141
    Abstract: Bacteria presumably involved in oxygen- or nitrate-dependent sulfide oxidation in the biofilters of a recirculating marine aquaculture system were identified using a new application of reverse transcription-PCR denaturing gradient gel electrophoresis (DGGE) analysis termed differential-transcription (DT)-DGGE. Biofilter samples were incubated in various concentrations of sulfide or thiosulfate (0 to 5 mM) with either oxygen or nitrate as the sole electron acceptor. Before and after short-term incubations (10 to 20 h), total DNA and RNA were extracted, and a 550-bp fragment of the 16S rRNA genes was PCR amplified either directly or after reverse transcription. DGGE analysis of DNA showed no significant change of the original microbial consortia upon incubation. In contrast, DGGE of cDNA revealed several phylotypes whose relative band intensities markedly increased or decreased in response to certain incubation conditions, indicating enhanced or suppressed rRNA transcription and thus implying metabolic activity under these conditions. Specifically, species of the gammaproteobacterial genus Thiomicrospira and phylotypes related to symbiotic sulfide oxidizers could be linked to oxygen-dependent sulfide oxidation, while members of the Rhodobacteraceae (genera Roseobacter , Rhodobacter , and Rhodobium ) were putatively active in anoxic, nitrate-dependent sulfide oxidation. For all these organisms, the physiology of their closest cultured relatives matches their DT-DGGE-inferred function. In addition, higher band intensities following exposure to 5 mM sulfide and nitrate were observed for Thauera- , Hydrogenophaga- , and Dethiosulfovibrio- like phylotypes. For these genera, nitrate-dependent sulfide oxidation has not been documented previously and therefore DT-DGGE might indicate a higher relative tolerance to high sulfide concentrations than that of other community members. We anticipate that DT-DGGE will be of general use in tracing functionally equivalent yet phylogenetically diverse microbial populations in nature.
    Type of Medium: Online Resource
    ISSN: 0099-2240 , 1098-5336
    RVK:
    Language: English
    Publisher: American Society for Microbiology
    Publication Date: 2005
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    detail.hit.zdb_id: 1478346-0
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  • 4
    In: The FASEB Journal, Wiley, Vol. 21, No. 6 ( 2007-01)
    Type of Medium: Online Resource
    ISSN: 0892-6638 , 1530-6860
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2007
    detail.hit.zdb_id: 1468876-1
    SSG: 12
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  • 5
    Online Resource
    Online Resource
    SAGE Publications ; 2009
    In:  Human Factors and Ergonomics Society Annual Meeting Proceedings Vol. 53, No. 4 ( 2009-10-19), p. 279-283
    In: Human Factors and Ergonomics Society Annual Meeting Proceedings, SAGE Publications, Vol. 53, No. 4 ( 2009-10-19), p. 279-283
    Type of Medium: Online Resource
    ISSN: 1071-1813
    Language: English
    Publisher: SAGE Publications
    Publication Date: 2009
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  • 6
    In: The Journal of Physiology, Wiley, Vol. 580, No. 3 ( 2007-05-01), p. 907-923
    Type of Medium: Online Resource
    ISSN: 0022-3751
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    Language: English
    Publisher: Wiley
    Publication Date: 2007
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    SSG: 12
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  • 7
    In: Blood, American Society of Hematology, Vol. 114, No. 22 ( 2009-11-20), p. 1913-1913
    Abstract: Abstract 1913 Poster Board I-936 Background: Myeloproliferative neoplasms (MPN) are clonal disorders with an origin of the disease in a hematopoietic stem or progenitor cell. Except for chronic myeloid leukemia (CML), the diagnosis for Philadelphia-chromosome negative (Ph-neg.) MPN is less straightforward. Although many patients with a Ph-neg. MPN can be identified by mutations in JAK2 and/or TET2, the categorization into primary or secondary cythosis or specifically into polycythemia vera (PV), essential thrombocythemia (ET) and primary myelofibrosis (PMF) can be difficult. Since telomeres can be used to estimate the mitotic history of cells, our aims were to evaluate 1) whether the telomere length can be used to distinguish clonal from polyclonal hematopoiesis, 2) whether telomere attrition correlates to the mutational status of JAK2 and 3) whether the extent of telomere shortening in different subsets of leukocytes can point to the originating level of the hematopoietic stem or progenitor cell. Patients and Methods: So far, 32 patients with Ph-neg. MPN diagnosed according to WHO criteria (range: 32 – 85 years; PV: n=19, ET n=5, PMF n=8; JAK2V617F positive n=22, JAK2V617F negative n=16) and 11 patients with secondary erythrocythosis (range 39 – 61 years) were included in this study. 400 healthy individuals (range 0-102 years) served as controls. After informed consent peripheral blood was taken from the patients to measure the telomere length in subsets of leukocytes by automated multicolor flow-FISH. In order to correct for the age-dependent decline in telomere length, telomere length differences to the 50th percentile of the healthy cohort (DeltaTel) were calculated. Telomere length values below the 10th percentile of those from healthy donors were considered as substantially affected by telomere attrition. The mutational status of the JAK2V617F was assessed by allele-specific real time quantitative PCR. Results: The mean telomere length in granulocytes from patients with MPN was considerably shorter compared to healthy controls (mean ± STD DeltaTel: 2.73kb ± 1.20kb), whereas there was no remarkable difference in lymphocytes (0.70kb ± 0.81kb). Furthermore, we found significant DeltaTel between granulocytes from patients with MPN and with secondary erythrocythosis (mean ± STD: 2.73kb ± 1.20kb vs. 1.66kb ± 0.894kb, p 〈 0.0001). Regarding the JAK2V617F mutational status we found no difference for the average DeltaTel (mean ± STD: 2.35kb ± 1.25kb (JAKV617F+), 2.28kb ± 1.12kb (JAKV617F-), p=0.84). Most interestingly, there was a clear difference in the average DeltaTel in granulocytes from patients with different types of MPN (ANOVA p=0.017). The most striking DeltaTel was seen between patients with PMF and patients with PV and ET (PMF: 3.72kb ± 0.30kb, PV and ET: 2.40kb ± 1.18kb, p=0.005). In addition, in patients with PMF most subsets of leukocytes demonstrated substantial telomere length differences compared to healthy controls (Granulocytes: 2.06kb ± 0.55kb, p=0.0001, T-cells: 0.84kb ± 1.07kb, p=0.016, B-cells: 1.62kb ± 1.29kb, p=0.0001, NK-cells: 0.95kb ± 1.49kb, p=0.039), whereas in patients with ET, except for the granulocyte subset, no significant DeltaTel values were detected (Granulocytes: 1.01kb ± 0.856kb, p=0.014, T-cells: -0.435kb ± 0.723, p=0.34, B-cells: 0.26kb ± 1.00kb, p=0.65, NK-cells: 0.30kb ± 0.86kb, p=0.58). In patients with PV one to three leukocyte subsets showed substantial DeltaTel, but in varying combinations. Conclusion: In our ongoing study we were able to confirm shorter telomeres in granulocytes of MPN patients compared to telomeres in granulocytes of healthy controls and of patients with secondary erythrocythosis. Based on the telomere length attrition patients with a clonal cythosis can be distinguished from such patients with a secondary cythosis, which could help diagnostically in uncertain cases. No correlation was found between the extent of telomere attrition and the JAK2V617F mutational status. The extremely short telomeres found in most subsets of leukocytes from patients with PMF could point to a very early hematopoietic stem cell as the cell of origin, whereas for ET and PV with only one or a few subsets of leukocytes affected by telomere attrition the cell of origin could be a hematopoietic stem cell at a somewhat later stage. Disclosures: No relevant conflicts of interest to declare.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2009
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  • 8
    Online Resource
    Online Resource
    American Society of Hematology ; 2009
    In:  Blood Vol. 114, No. 22 ( 2009-11-20), p. 3239-3239
    In: Blood, American Society of Hematology, Vol. 114, No. 22 ( 2009-11-20), p. 3239-3239
    Abstract: Abstract 3239 Poster Board III-176 Background The Ku autoantigen is a heterodimer composed of a 70kDa subunit (Ku70) and an 80kDa subunit (Ku86), which is critical for repairing DNA double-strand breaks (DSB) by non-homologous end joining and for telomere maintenance. Knockdown of either one or both Ku components results in rapid shortening of telomere ends and genomic instability (Fattah et al., DNA Repair 2008; Faure et al., DNA Repair 2008). We and others have demonstrated significantly shorter telomeres in patients with chronic lymphocytic leukemia (CLL) (Röth A et al, Brit. J. Haematol. 2008). In addition, in over 80% of patients with CLL cytogenetic aberrations are found (Döhner H, NEJM, 2000). Based on these observations we hypothesized that differences in Ku protein expression or function could be involved in the pathophysiology of CLL cells. Our aim was to assess the localization and expression levels of the Ku components in leukemic cells of patients with CLL Patients and Methods So far, we examined the localization and expression of the Ku-proteins in 20 patients with CLL (14 with mutated IgVH genes, 6 with unmutated IgVH genes), and in peripheral blood lymphocytes of 4 healthy individuals. The localization of the Ku proteins was assessed by immunological staining and fluorescence microscopy. Expression levels of the Ku components in whole cells as well as in the cytoplasmic and nuclear fractions were assessed by Western blotting. DNA sequencing was done by cycle sequencing and capillary electrophoresis. Telomere length measurements were performed by automated multicolor Flow-FISH. Results Lymphocytes of healthy individuals with a normal telomere length showed an expression of Ku70 and Ku86 in the nucleus without any cytoplasmic expression. Interestingly, in leukemic cells from CLL patient samples, Ku86 was not detectable in the nucleus, but was abundantly found in the cytoplasm, while Ku70 was found in approximately equal amounts in the nucleus and cytoplasm. The expression levels of both Ku proteins were comparable in lymphocytes from CLL patients and from healthy controls. Sequence analysis of the Ku70 and Ku86 DNA revealed no mutations. All leukemic cells of CLL patients had short telomeres below the 50th percentile of healthy individuals with significantly shorter telomeres in patient samples with unmutated IgVH (mean: 2.8kb ± 0.03kb) than with mutated IgVH (mean: 6.15kb ± 2.92kb). In contrast, no difference in the expression pattern of Ku70 and Ku86 was found between these two prognostic subgroups of CLL patients. Conclusion For the first time we can demonstrate clear differences in the expression and localization of the Ku proteins in leukemic cells of patients with CLL with short telomeres compared to lymphocytes of healthy individuals with telomeres in the normal range. The high cytoplasmic expression of both Ku proteins in the leukemic cells of CLL patients and the lack of nuclear Ku86 protein suggested the presence of a genetic alteration. Although we could not find any mutations in the DNA sequence of the Ku proteins, the delocalization could point to changes in the Ku proteins (i.e. by post-translational modifications) and/or in the transport system of the Ku proteins between the nucleus and the cytoplasm. Deficient nuclear expression of Ku86 and/or Ku70 in CLL cells might lead to shortening of telomeres and genomic instability as has been seen in heterozygous Ku86 deficient human cell lines. Since there was no difference in the expression and localization of the Ku proteins in CLL cells with mutated and unmutated IgVH it is unlikely that the absolute telomere length, which differs highly between the two subgroups of CLL patients, is directly related to the level of the nuclear Ku protein expression. Further molecular and functional studies of the Ku proteins are ongoing. Disclosures No relevant conflicts of interest to declare.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
    RVK:
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2009
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  • 9
    In: Blood, American Society of Hematology, Vol. 112, No. 11 ( 2008-11-16), p. 3131-3131
    Abstract: BACKGROUND: In chronic lymphocytic leukemia (CLL) short telomeres were shown to be associated with mutational status, progression free survival (PFS) and overall survival (Damle et al., 2004). Chromosomal instability increases with shortening of telomeres. Recently, a relationship between telomere length and number of chromosomal aberrations has been shown if telomere length was investigated by quantitative real-time polymerase chain reaction (Tel-PCR) (Roos et al., 2008). The aim of the present study was to correlate average telomere length of individual cells measured by multicolor flow-FISH to established prognostic factors and genomic aberrations. PATIENTS and METHODS: Blood samples from 64 patients with CLL were analyzed. Flow cytometry was performed for quantification of ZAP-70 and CD 38 expression with a cut off at 20%. Immunoglobulin variable heavy chain (IGVH) genes were sequenced. An IGVH gene sequence with less than 98% homology with the corresponding germ-line sequence was considered to be mutated. Chromosomal alterations were investigated by fluorescence in situ hybridization (FISH) with the following gene probes: LSI 13q14, LSI 13q34, CEP 12, LSI 17p13, LSI 11q22–23. Copy number changes were also detected in 18 samples by SNP-chip analysis. The average length of telomere repeats at chromosome ends was measured by multicolor flow-FISH. Values of telomere length from CLL cells were correlated to values of telomere lengths of B lymphocytes from healthy age matched individuals (delta telomere length=Δtel). RESULTS: The average telomere length of the clonal B-cells was short. Patient samples from advanced Binet stages (B/C) had significantly shorter telomeres (Δtel −4.8 ± 1.0 kb) than patients samples from Binet A (Δtel −3.4 ± 1.2 kb, p=0.03). The average telomere length was significantly shorter for ZAP-70+ (Δtel −5.0 ± 0.5 kb) and CD38+ (Δtel −4.9 ± 0.7 kb) patient samples than for ZAP-70− (Δtel −2.4 ± 0.8 kb) and CD38− (Δtel −3.0 ± 1.0 kb) patient samples, respectively (p & lt;0.005, p & lt;0.005). IGVH unmutated CLL samples exhibited significant shorter telomere lengths (Δtel −4.8 ± 0.4 kb) than mutated samples (Δtel −2.8 ± 0.9 kb, p & lt;0.005). Interestingly CLL samples harbouring del 17p and del 11q had significantly shorter average telomere length (Δtel −5.3 ± 0.2 kb, n= 8) than samples without these aberrations (Δtel −4.0 ± 1.2 kb; n= 56, p & lt;0.005). Furthermore we found a tendency of an increase in the number of chromosomal aberrations detected by SNP-chip with shorter telomeres. DISCUSSION: We are able to confirm significant shorter telomeres in CLL samples with unfavourable prognostic factors like advanced Binet stage, positivity for ZAP-70 or CD38 and unmutated IGVH genes compared to their favourable counterparts. CLL samples with the chromosomal aberrations del 17p and del 11q are associated with bad clinical outcome. CLL with these aberrations of the present study demonstrated significantly shorter telomeres compared to cases without these abnormalities. Additional studies relating impact of telomere length on genomic instability detected by SNP-chip are ongoing.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2008
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  • 10
    In: Nature, Springer Science and Business Media LLC, Vol. 443, No. 7113 ( 2006-10), p. 854-858
    Type of Medium: Online Resource
    ISSN: 0028-0836 , 1476-4687
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    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2006
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    detail.hit.zdb_id: 1413423-8
    SSG: 11
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