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  • 1
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    ASLO (Association for the Sciences of Limnology and Oceanography)
    In:  Limnology and Oceanography, 57 (3). pp. 809-825.
    Publication Date: 2016-04-29
    Description: To investigate diel calcium carbonate (CaCO3) dynamics in permeable coral reef sands, we measured pore-water profiles and fluxes of oxygen (O2), nutrients, pH, calcium (Ca2+), and alkalinity (TA) across the sediment-water interface in sands of different permeability at Heron Reef, Australia. Background flushing rates were high, most likely as a result of infaunal burrow irrigation, but flux chamber stirring enhanced pore-water exchange. Light and pore-water advection fueled high rates of benthic primary production and calcification in sunlit surface sediments. In the light, benthic photosynthesis and calcification induced surface minima in Ca2+ and TA and peaks in pH and O2. Oxygen penetration depth in coarse sands decreased from ∼ 1.2 cm during the day to ∼ 0.6 cm at night. Total oxygen uptake (TOU) in dark chambers was three to fourteen times greater than diffusive uptake and showed a direct effect of pore-water advection. Greater sediment oxygen consumption rates were observed in higher permeability sands. In the dark, TA release was not stimulated by increasing TOU because of a damping effect of pore-water advection on metabolic CaCO3 dissolution efficiency. On a daily basis, CaCO3 undergoes net dissolution in Heron Reef sands. However, pore-water advection can reverse the CaCO3 budget and promote CaCO3 preservation under the most energetic conditions.
    Type: Article , PeerReviewed
    Format: text
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  • 2
    Publication Date: 2019-07-16
    Description: We compared primary production and respiration of temperate (Helgoland, North Sea) and subtidal Arctic (Kongsfjorden, Svalbard) microphytobenthic communities during summer. The diatom communities were generally characterized as cosmopolitan, displayed no site specificity, and had similar chl a and fucoxanthin concentrations. Their net and gross photosynthesis rates and light adaptation intensities, derived from laboratory microsensor measurements, were also similar, despite differences in water temperature. Daily oxygen fluxes across the sediment− water interface were estimated by combining laboratory microprofile and planar optode measurements with in situ data on oxygen penetration and light dynamics. During the study period, the Svalbard sediments were on average net heterotrophic,while the Helgoland sediments were net autotrophic (−22.4 vs. 9.2 mmol O2 m−2 d−1). This was due to high infaunal abundance in the Svalbard sediments that caused high oxygen uptake rates in the sediments and consumption below the sediment euphotic zone. Additionally, bioirrigation of the sediment due to infaunal burrow ventilation was reduced by light; thus, the sedimentary oxygen inventory was reduced with increasing light. Conversely, light-enhanced the oxygen inventory in the Helgoland sediments. Oxygen dynamics in the Svalbard sediments were therefore dominated by bioirrigation, whereas in the Helgoland sediments they were dominated by photosynthetic oxygen production.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Format: application/pdf
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  • 3
    Publication Date: 2017-02-01
    Description: We describe a novel, field-deployable hyperspectral imaging system, called Hypersub, that allows noninvasive in situ mapping of the microphytobenthos (MPB) biomass distribution with a high spatial (sub-millimeter) and temporal (minutes) resolution over areas of 1 × 1 m. The biomass is derived from a log-transformed and near-infrared corrected reflectance hyperspectral index, which exhibits a linear relationship (R2 〉 0.97) with the chlorophyll a (Chl a) concentration in the euphotic zone of the sediment and depends on the sediment grain size. Deployments of the system revealed that due to factors such as sediment topography, bioturbation, and grazing, the distribution of MPB in intertidal sediments is remarkably heterogeneous, with Chl a concentrations varying laterally by up to 400% of the average value over a distance of 1 cm. Furthermore, due to tidal cycling and diel light variability, MPB concentrations in the top 1 mm of sediments are very dynamic, changing by 40–80% over a few hours due to vertical migration. We argue that the high-resolution hyperspectral imaging method overcomes the inadequate resolution of traditional methods based on sedimentary Chl a extraction, and thus helps improve our understanding of the processes that control benthic primary production in coastal sediments.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , peerRev
    Format: application/pdf
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  • 4
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    PANGAEA
    In:  Max-Planck-Institut für Marine Mikrobiologie | Supplement to: Al-Najjar, Mohammad A A; de Beer, Dirk; Kühl, Michael; Polerecky, Lubos (2012): Light utilization efficiency in photosynthetic microbial mats. Environmental Microbiology, 14(4), 982-992, https://doi.org/10.1111/j.1462-2920.2011.02676.x
    Publication Date: 2023-01-13
    Description: Based on combined microsensor measurements of irradiance, temperature and O2, we compared light energy budgets in photosynthetic microbial mats, with a special focus on the efficiency of light energy conservation by photosynthesis. The euphotic zones in the three studied mats differed in their phototrophic community structure, pigment concentrations and thickness. In all mats, 〈 1% of the absorbed light energy was conserved via photosynthesis at high incident irradiance, while the rest was dissipated as heat. Under light-limiting conditions, the photosynthetic efficiency reached a maximum, which varied among the studied mats between 4.5% and 16.2% and was significantly lower than the theoretical maximum of 27.7%. The maximum efficiency correlated linearly with the light attenuation coefficient and photopigment concentration in the euphotic zone. Higher photosynthetic efficiency was found in mats with a thinner and more densely populated euphotic zone. Microbial mats exhibit a lower photosynthetic efficiency compared with ecosystems with a more open canopy-like organization of photosynthetic elements, where light propagation is not hindered to the same extent by photosynthetically inactive components; such components contributed about 40-80% to light absorption in the investigated microbial mats, which is in a similar range as in oceanic planktonic systems.
    Type: Dataset
    Format: application/zip, 6 datasets
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  • 5
    Publication Date: 2023-02-08
    Keywords: Abu-Dhab, Sadeyat Island; AD-mat; DEPTH, sediment/rock; Microsensor-ex situ; MICS; Temperature, in rock/sediment; Temperature, standard deviation
    Type: Dataset
    Format: text/tab-separated-values, 350 data points
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  • 6
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    PANGAEA
    In:  Max-Planck-Institut für Marine Mikrobiologie
    Publication Date: 2023-02-08
    Keywords: AUS-mat; Australia, Exmouth Gulf; DEPTH, sediment/rock; Irradiance; Irradiance microprobe (integrating sphere diameter 100 mm;Lassen et al. 1992); Microsensor-ex situ; MICS
    Type: Dataset
    Format: text/tab-separated-values, 14 data points
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  • 7
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    PANGAEA
    In:  Max-Planck-Institut für Marine Mikrobiologie
    Publication Date: 2023-02-08
    Keywords: Abu-Dhab, Sadeyat Island; AD-mat; DEPTH, sediment/rock; Irradiance; Irradiance microprobe (integrating sphere diameter 100 mm;Lassen et al. 1992); Microsensor-ex situ; MICS
    Type: Dataset
    Format: text/tab-separated-values, 19 data points
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  • 8
    Publication Date: 2023-02-08
    Keywords: Abu-Dhab, Sadeyat Island; AD-mat; DEPTH, sediment/rock; Microsensor-based light-dark shift method (Revsbech and Jørgensen, 1983); Microsensor-ex situ; MICS; Standard deviation; Volumetric photosynthesis rate, oxygen production
    Type: Dataset
    Format: text/tab-separated-values, 132 data points
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  • 9
    Publication Date: 2023-02-08
    Keywords: AUS-mat; Australia, Exmouth Gulf; DEPTH, sediment/rock; Microsensor-based light-dark shift method (Revsbech and Jørgensen, 1983); Microsensor-ex situ; MICS; Standard deviation; Volumetric photosynthesis rate, oxygen production
    Type: Dataset
    Format: text/tab-separated-values, 32 data points
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  • 10
    Publication Date: 2023-02-08
    Keywords: AUS-mat; Australia, Exmouth Gulf; DEPTH, sediment/rock; Microsensor-ex situ; MICS; Temperature, in rock/sediment; Temperature, standard deviation
    Type: Dataset
    Format: text/tab-separated-values, 96 data points
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